MD16G1119600.v1.1

drought-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0016711
Physical Location & Seq
Reverse (-)
8584205 .. 8584501
297 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1119600.v1.1.491

Sequence Viewer

Length: 297 bp
ATGGGAGGTCCGATCGTGCTGACTCAACTGGCCACCGGTCTCGGCGTCTTGGCGGGCGCGGTCTTCGTCAAAACGATCATGGACCGGAACACCATGGCCGGCCCGTTCCCGCGGTGTCCCAGGTGTAACGGAACGGGTCGGGTCTCGTGCTTCTGCTCCCGCTGGTCCGATGGCGATGTCGGGTGTCGGAGCTGTGCCGGGTCGGGTCGTACGTTATGTAGCAGCTGTGGTGGGTCGGGTACGGGTCGGCCACTTCCGGTTCAGATCTCCGTACAGCGTCCCAACCCTCCGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.0

Weight (kDa)

9.41

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016711)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43260
malus_domestica MD05G1114700.v1.1 MD13G1119200.v1.1 MD16G1119600.v1.1
prunus_persica Prupe.1G225600_v2.0.a1
pyrus_communis pycom13g10400 pycom16g10230
rosa_chinensis RchiOBHm_Chr4g0430231
rosa_multiflora Rmu_co8297869.1_g000001 Rmu_sc0030011.1_g000002
rosa_roxburghii Rroxscaffold_5G00372020
rosa_rugosa Rorug04G0241700
rosa_samantha Rh4BG304700
rosa_wichuraiana Rw4G025860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 59, 112
AciI CCGC 5 cut(s) 53, 59, 110, 112, 160
AcoI YGGCCR 3 cut(s) 30, 96, 248
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 3 cut(s) 211, 241, 273
AgeI ACCGGT 1 cut(s) 35
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 2 cut(s) 192, 225
AluI AGCT 2 cut(s) 192, 225
Alw26I GTCTC 2 cut(s) 44, 148
AoxI GGCC 4 cut(s) 30, 96, 100, 248
ApeKI GCWGC 1 cut(s) 222
AsiGI ACCGGT 1 cut(s) 35
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 4 cut(s) 8, 82, 101, 165
AsuC2I CCSGG 1 cut(s) 199
AvaII GGWCC 3 cut(s) 8, 82, 165
BalI TGGCCA 1 cut(s) 32
BauI CACGAG 1 cut(s) 145
BbsI GAAGAC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 234
BccI CCATC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 121
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 2 cut(s) 44, 148
BglII AGATCT 1 cut(s) 264
BisI GCNGC 1 cut(s) 223
BlsI GCNGC 1 cut(s) 224
Bme1390I CCNGG 2 cut(s) 121, 199
Bme18I GGWCC 3 cut(s) 8, 82, 165
BmgT120I GGNCC 4 cut(s) 8, 82, 101, 165
BmrFI CCNGG 2 cut(s) 121, 199
BpiI GAAGAC 1 cut(s) 55
BpuMI CCSGG 1 cut(s) 199
BsaHI GRCGYC 1 cut(s) 45
BsaI GGTCTC 2 cut(s) 44, 148
BsaJI CCNNGG 3 cut(s) 93, 110, 119
BsaWI WCCGGW 3 cut(s) 35, 84, 256
Bse118I RCCGGY 2 cut(s) 35, 98
Bse1I ACTGG 1 cut(s) 33
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 3 cut(s) 93, 110, 119
BseNI ACTGG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 234
Bsh1236I CGCG 2 cut(s) 59, 112
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 4 cut(s) 32, 98, 102, 250
BshTI ACCGGT 1 cut(s) 35
BsiEI CGRYCG 1 cut(s) 15
BsiSI CCGG 5 cut(s) 36, 85, 99, 198, 257
BsiWI CGTACG 1 cut(s) 209
BslFI GGGAC 2 cut(s) 102, 264
BsmAI GTCTC 2 cut(s) 44, 148
BsmFI GGGAC 2 cut(s) 102, 264
BsnI GGCC 4 cut(s) 32, 98, 102, 250
Bso31I GGTCTC 2 cut(s) 44, 148
Bsp143I GATC 3 cut(s) 12, 75, 264
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 5 cut(s) 53, 59, 110, 112, 160
BspANI GGCC 4 cut(s) 32, 98, 102, 250
BspFNI CGCG 2 cut(s) 59, 112
BspTNI GGTCTC 2 cut(s) 44, 148
BsrFI RCCGGY 2 cut(s) 35, 98
BsrI ACTGG 1 cut(s) 33
BssAI RCCGGY 2 cut(s) 35, 98
BssECI CCNNGG 3 cut(s) 93, 110, 119
BssMI GATC 3 cut(s) 12, 75, 264
BssNI GRCGYC 1 cut(s) 45
BssSI CACGAG 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 93
Bst2BI CACGAG 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 121
BstACI GRCGYC 1 cut(s) 45
BstC8I GCNNGC 2 cut(s) 55, 100
BstDEI CTNAG 1 cut(s) 294
BstDSI CCRYGG 2 cut(s) 93, 110
BstFNI CGCG 2 cut(s) 59, 112
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 3 cut(s) 15, 78, 267
BstMAI GTCTC 2 cut(s) 44, 148
BstMBI GATC 3 cut(s) 12, 75, 264
BstMCI CGRYCG 1 cut(s) 15
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 2 cut(s) 119, 197
BstUI CGCG 2 cut(s) 59, 112
BstV1I GCAGC 1 cut(s) 234
BstV2I GAAGAC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 264
BstYI RGATCY 1 cut(s) 264
BsuRI GGCC 4 cut(s) 32, 98, 102, 250
BtgI CCRYGG 2 cut(s) 93, 110
BtgZI GCGATG 1 cut(s) 189
Cac8I GCNNGC 2 cut(s) 55, 100
CfoI GCGC 1 cut(s) 59
Cfr10I RCCGGY 2 cut(s) 35, 98
Cfr13I GGNCC 4 cut(s) 8, 82, 101, 165
Cfr42I CCGCGG 1 cut(s) 113
CseI GACGC 2 cut(s) 34, 266
Csp6I GTAC 3 cut(s) 210, 240, 272
CspAI ACCGGT 1 cut(s) 35
CviAII CATG 2 cut(s) 79, 94
CviJI RGCY 6 cut(s) 32, 98, 102, 192, 225, 250
CviKI_1 RGCY 6 cut(s) 32, 98, 102, 192, 225, 250
CviQI GTAC 3 cut(s) 210, 240, 272
DdeI CTNAG 1 cut(s) 294
DpnI GATC 3 cut(s) 14, 77, 266
DpnII GATC 3 cut(s) 12, 75, 264
EaeI YGGCCR 3 cut(s) 30, 96, 248
Eco130I CCWWGG 1 cut(s) 93
Eco31I GGTCTC 2 cut(s) 44, 148
Eco47I GGWCC 3 cut(s) 8, 82, 165
EcoRII CCWGG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 2 cut(s) 82, 97
FaiI YATR 3 cut(s) 80, 95, 217
FaqI GGGAC 2 cut(s) 102, 264
FatI CATG 2 cut(s) 78, 93
FauI CCCGC 3 cut(s) 46, 117, 167
Fnu4HI GCNGC 1 cut(s) 223
FseI GGCCGGCC 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 223
GlaI GCGC 1 cut(s) 58
GluI GCNGC 1 cut(s) 223
HaeIII GGCC 4 cut(s) 32, 98, 102, 250
HapII CCGG 5 cut(s) 36, 85, 99, 198, 257
HgaI GACGC 2 cut(s) 34, 266
HhaI GCGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 2 cut(s) 82, 97
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HinfI GANTC 1 cut(s) 22
HpaII CCGG 5 cut(s) 36, 85, 99, 198, 257
Hpy188I TCNGA 4 cut(s) 12, 169, 189, 264
HpyCH4IV ACGT 1 cut(s) 212
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 212
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 2 cut(s) 82, 97
HspAI GCGC 1 cut(s) 57
KroI GCCGGC 1 cut(s) 98
KroNI GCCGGC 1 cut(s) 100
KspI CCGCGG 1 cut(s) 113
Kzo9I GATC 3 cut(s) 12, 75, 264
LmnI GCTCC 2 cut(s) 161, 189
LpnPI CCDG 9 cut(s) 14, 49, 98, 106, 112, 133, 148, 211, 270
Lsp1109I GCAGC 1 cut(s) 234
MaeII ACGT 1 cut(s) 212
MaeIII GTNAC 1 cut(s) 125
MalI GATC 3 cut(s) 14, 77, 266
MboI GATC 3 cut(s) 12, 75, 264
MboII GAAGA 1 cut(s) 55
MflI RGATCY 1 cut(s) 264
MlsI TGGCCA 1 cut(s) 32
MluNI TGGCCA 1 cut(s) 32
MlyI GAGTC 1 cut(s) 16
MmeI TCCRAC 1 cut(s) 167
MnlI CCTC 1 cut(s) 297
Mox20I TGGCCA 1 cut(s) 32
MroNI GCCGGC 1 cut(s) 98
MscI TGGCCA 1 cut(s) 32
Msp20I TGGCCA 1 cut(s) 32
MspA1I CMGCKG 3 cut(s) 112, 162, 225
MspI CCGG 5 cut(s) 36, 85, 99, 198, 257
MspR9I CCNGG 2 cut(s) 121, 199
MvaI CCWGG 1 cut(s) 121
MvnI CGCG 2 cut(s) 59, 112
NaeI GCCGGC 1 cut(s) 100
NciI CCSGG 1 cut(s) 199
NcoI CCATGG 1 cut(s) 93
NdeII GATC 3 cut(s) 12, 75, 264
NgoMIV GCCGGC 1 cut(s) 98
NlaIII CATG 2 cut(s) 82, 97
NmeAIII GCCGAG 1 cut(s) 21
PcsI WCGNNNNNNNCGW 1 cut(s) 209
PdiI GCCGGC 1 cut(s) 100
Pfl23II CGTACG 1 cut(s) 209
PinAI ACCGGT 1 cut(s) 35
PkrI GCNGC 1 cut(s) 224
Ple19I CGATCG 1 cut(s) 15
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspLI CGTACG 1 cut(s) 209
PspPI GGNCC 4 cut(s) 8, 82, 101, 165
PsuI RGATCY 1 cut(s) 264
PvuI CGATCG 1 cut(s) 15
PvuII CAGCTG 1 cut(s) 225
RigI GGCCGGCC 1 cut(s) 102
RsaI GTAC 3 cut(s) 211, 241, 273
RsaNI GTAC 3 cut(s) 210, 240, 272
SacII CCGCGG 1 cut(s) 113
SatI GCNGC 1 cut(s) 223
Sau3AI GATC 3 cut(s) 12, 75, 264
Sau96I GGNCC 4 cut(s) 8, 82, 101, 165
SchI GAGTC 1 cut(s) 16
ScrFI CCNGG 2 cut(s) 121, 199
SetI ASST 5 cut(s) 10, 125, 194, 215, 227
Sfr303I CCGCGG 1 cut(s) 113
SgrBI CCGCGG 1 cut(s) 113
SinI GGWCC 3 cut(s) 8, 82, 165
SsiI CCGC 5 cut(s) 53, 59, 110, 112, 160
StyD4I CCNGG 2 cut(s) 119, 197
StyI CCWWGG 1 cut(s) 93
TaiI ACGT 1 cut(s) 215
TseI GCWGC 1 cut(s) 222
TspGWI ACGGA 3 cut(s) 144, 259, 279
VpaK11BI GGWCC 3 cut(s) 8, 82, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.