MD05G1125100.v1.1

Serine threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
24742388 .. 24744789
2402 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1125100.v1.1.491

Sequence Viewer

Length: 1386 bp
ATGGGAGTTCAAAACAACAGTCCAAGAGCTTCCCCAAGAAGAAAATCTACAACCCTTCAACACTTGTTTGATCTCGATGCCAAAAGCGCTTCTGACAGCAAAACTATTATTGGCAGTCAATCTTCTTCCAGTTTGGAAAATGAAGAAATCCTGTCAGCAATCTCCATCTGCAATTTCATCTGCACCTTCACCGATCCGAGCGAATGCCCTACGCAACAAGAACTTAAAAGGCAGAAGCTTTTGCAGCTTCTTTCGATTGTCAAATCCTCGAAGAAGCCTCTGCATGATCAAGTCATGACGTCTCTCATTTCCATGATATCGTTGAACATTTTCCGGTCTCTCCCTCCTCCTTCCAATCCCACATATGCCATGGACTTTCCCGACGATGAAGACCCCATTTCCACCTTTTCCCCTGTGTGGTCACACCTGCAGTTAGTCTACGACATACTCATCCGCCTTGTGATTAACAATGATCCTAAGTTACTCAGAGGCTACATTGACAACCAGTTTGTTGTCAACCTCCTTGCCCTCTTCCAATCAGAAGACCCGAGAGAGCGCAACAGCTTGAAGAATGTGTACCATAGAATATATTCTCGATTCACATTCTACCGTTCGTCCATGAGGAAATCGATGAATGATGTGTTCTTGCACTATGTGTTTGAGACAGAGCGGCATTGTGGGATCAGAGAGTTGCTTGAGATATGGGGAAGCATAATCAATGGCTTCACCGTGCCGCTGAAGGAAGAGCACAAGCTGTTTTTGATGAGAGTGCTTATTCCTTTCCACAAGACCAAGGGGTTGCAGGGCTACCACAAGCAGCTGGCTTATTGTGTGTCGCAATTTGTGCAGAAGGAGCCCGTACTTGGCGGAATTGTGGTGAGAGGAATTCTGAGGTATTGGCCCATGACGAATTGCCAGAAGGAGGTTTTGCTGGTTGGGGAGCTGGAGGAGCTGGTGGAGAATATTGACCCTGATCAGTATAGGAAGTTGGCCCTGCCTCTGTGCGTACAGATAACAAGATGCTTGAACAGTTGGAACTCACAGGTAGCAGAGAGAGCCCTCTATGTTTGGAACAATGAGCAGTTTGTGAAGATGATATCAGTGGCAATGGAGGAAGTGTTTCCAGTCGTGGTTGAAGGCATGGAGAAGAACTTGAAGTGGCATTGGAGCAAAAGCGTCCGGCAACTGACAGAAAACGTGAAGGTGATGCTCGAAGAAATGGATCCAGTTTTGTACTCCAAATGCCTGGAAGAAATTGAGCTAAGAGAATCCAAGGCCAACCAAGCAGAACTCAAGAGGAAGGAGAAATGGGACCGAATAGAAATGGCTGCAGCAGCCAAGCATCAGTTTCCCCAACCACAACATTTCATGTGTGTTTCTCACTAA

Protein Analysis

462

Amino Acids

53.53

Weight (kDa)

7.59

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B56 PF01603 42 - 444 3.1e-145 Protein phosphatase 2A regulatory B subunit (B56 family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015544)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 435
AatII GACGTC 1 cut(s) 302
Acc36I ACCTGC 1 cut(s) 435
AccBSI CCGCTC 1 cut(s) 670
AccI GTMKAC 1 cut(s) 438
AciI CCGC 4 cut(s) 454, 670, 734, 867
AclWI GGATC 5 cut(s) 188, 467, 689, 1217, 1230
AcsI RAATTY 1 cut(s) 885
AcuI CTGAAG 1 cut(s) 758
AcyI GRCGYC 1 cut(s) 299
AdeI CACNNNGTG 1 cut(s) 655
AfaI GTAC 4 cut(s) 578, 861, 1008, 1235
AfeI AGCGCT 1 cut(s) 88
AfiI CCNNNNNNNGG 3 cut(s) 417, 863, 922
AgsI TTSAA 7 cut(s) 11, 59, 325, 568, 1027, 1136, 1156
AjnI CCWGG 1 cut(s) 1245
AluBI AGCT 9 cut(s) 29, 238, 247, 564, 754, 820, 943, 952, 1261
AluI AGCT 9 cut(s) 29, 238, 247, 564, 754, 820, 943, 952, 1261
Alw21I GWGCWC 1 cut(s) 750
Alw26I GTCTC 3 cut(s) 306, 342, 656
AlwI GGATC 5 cut(s) 188, 467, 689, 1217, 1230
Ama87I CYCGRG 1 cut(s) 547
Aor51HI AGCGCT 1 cut(s) 88
AoxI GGCC 3 cut(s) 899, 990, 1275
ApeKI GCWGC 5 cut(s) 244, 817, 1328, 1331, 1334
ApoI RAATTY 1 cut(s) 885
ArsI GACNNNNNNTTYG 3 cut(s) 36, 491, 523
Asp700I GAANNNNTTC 3 cut(s) 329, 589, 1119
AspLEI GCGC 2 cut(s) 89, 558
AspS9I GGNCC 3 cut(s) 900, 991, 1312
AsuHPI GGTGA 4 cut(s) 181, 718, 889, 1216
AvaI CYCGRG 1 cut(s) 547
AvaII GGWCC 1 cut(s) 1312
BamHI GGATCC 1 cut(s) 1222
BanII GRGCYC 2 cut(s) 858, 1060
BarI GAAGNNNNNNTAC 4 cut(s) 31, 63, 560, 592
BbsI GAAGAC 2 cut(s) 396, 549
Bbv12I GWGCWC 1 cut(s) 750
BbvI GCAGC 5 cut(s) 256, 829, 1315, 1343, 1346
BccI CCATC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 1247
BclI TGATCA 2 cut(s) 286, 973
BcoDI GTCTC 3 cut(s) 306, 342, 656
BfmI CTRYAG 2 cut(s) 428, 1329
BfoI RGCGCY 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 435
BisI GCNGC 7 cut(s) 245, 671, 734, 818, 1329, 1332, 1335
BlsI GCNGC 7 cut(s) 246, 672, 735, 819, 1330, 1333, 1336
Bme1390I CCNGG 1 cut(s) 1247
Bme18I GGWCC 1 cut(s) 1312
BmeT110I CYCGRG 1 cut(s) 547
BmgT120I GGNCC 3 cut(s) 900, 991, 1312
BmiI GGNNCC 3 cut(s) 855, 1224, 1313
BmrFI CCNGG 1 cut(s) 1247
BmsI GCATC 4 cut(s) 67, 1010, 1197, 1351
BpiI GAAGAC 2 cut(s) 396, 549
BpmI CTGGAG 1 cut(s) 965
BpuEI CTTGAG 2 cut(s) 716, 1277
Bsa29I ATCGAT 1 cut(s) 629
BsaHI GRCGYC 1 cut(s) 299
BsaI GGTCTC 1 cut(s) 342
BsaJI CCNNGG 3 cut(s) 369, 792, 1272
BsaWI WCCGGW 1 cut(s) 333
BsaXI ACNNNNNCTCC 2 cut(s) 1103, 1133
Bsc4I CCNNNNNNNGG 3 cut(s) 417, 863, 922
Bse1I ACTGG 4 cut(s) 129, 505, 1124, 1226
Bse3DI GCAATG 1 cut(s) 1113
BseBI CCWGG 1 cut(s) 1247
BseCI ATCGAT 1 cut(s) 629
BseDI CCNNGG 3 cut(s) 369, 792, 1272
BseGI GGATG 1 cut(s) 450
BseLI CCNNNNNNNGG 3 cut(s) 417, 863, 922
BseMI GCAATG 1 cut(s) 1113
BseMII CTCAG 2 cut(s) 499, 881
BseNI ACTGG 4 cut(s) 129, 505, 1124, 1226
BseRI GAGGAG 2 cut(s) 336, 962
BseXI GCAGC 5 cut(s) 256, 829, 1315, 1343, 1346
BsgI GTGCAG 2 cut(s) 166, 866
BshFI GGCC 3 cut(s) 901, 992, 1277
BshVI ATCGAT 1 cut(s) 629
BsiHKAI GWGCWC 1 cut(s) 750
BsiHKCI CYCGRG 1 cut(s) 547
BsiSI CCGG 2 cut(s) 334, 1180
BslFI GGGAC 1 cut(s) 1325
BslI CCNNNNNNNGG 3 cut(s) 417, 863, 922
BsmAI GTCTC 3 cut(s) 306, 342, 656
BsmBI CGTCTC 1 cut(s) 306
BsmFI GGGAC 1 cut(s) 1325
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 3 cut(s) 901, 992, 1277
Bso31I GGTCTC 1 cut(s) 342
BsoBI CYCGRG 1 cut(s) 547
Bsp1286I GDGCHC 3 cut(s) 750, 858, 1060
Bsp143I GATC 7 cut(s) 70, 193, 286, 472, 681, 973, 1222
Bsp19I CCATGG 1 cut(s) 369
BspACI CCGC 4 cut(s) 454, 670, 734, 867
BspANI GGCC 3 cut(s) 901, 992, 1277
BspCNI CTCAG 2 cut(s) 498, 882
BspDI ATCGAT 1 cut(s) 629
BspHI TCATGA 1 cut(s) 294
BspLI GGNNCC 3 cut(s) 855, 1224, 1313
BspMAI CTGCAG 2 cut(s) 432, 1333
BspMI ACCTGC 1 cut(s) 435
BspPI GGATC 5 cut(s) 188, 467, 689, 1217, 1230
BspQI GCTCTTC 1 cut(s) 738
BspTNI GGTCTC 1 cut(s) 342
BsrBI CCGCTC 1 cut(s) 670
BsrDI GCAATG 1 cut(s) 1113
BsrI ACTGG 4 cut(s) 129, 505, 1124, 1226
BssECI CCNNGG 3 cut(s) 369, 792, 1272
BssMI GATC 7 cut(s) 70, 193, 286, 472, 681, 973, 1222
BssNI GRCGYC 1 cut(s) 299
BssT1I CCWWGG 3 cut(s) 369, 792, 1272
Bst2UI CCWGG 1 cut(s) 1247
Bst4CI ACNGT 4 cut(s) 20, 611, 730, 1031
Bst6I CTCTTC 2 cut(s) 536, 738
BstACI GRCGYC 1 cut(s) 299
BstAPI GCANNNNNTGC 1 cut(s) 844
BstC8I GCNNGC 1 cut(s) 822
BstDEI CTNAG 4 cut(s) 477, 485, 890, 1262
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 1 cut(s) 450
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 2 cut(s) 89, 558
BstKTI GATC 7 cut(s) 73, 196, 289, 475, 684, 976, 1225
BstMAI GTCTC 3 cut(s) 306, 342, 656
BstMBI GATC 7 cut(s) 70, 193, 286, 472, 681, 973, 1222
BstMWI GCNNNNNNNGC 8 cut(s) 86, 244, 844, 853, 949, 1055, 1283, 1334
BstNI CCWGG 1 cut(s) 1247
BstSCI CCNGG 1 cut(s) 1245
BstSFI CTRYAG 2 cut(s) 428, 1329
BstV1I GCAGC 5 cut(s) 256, 829, 1315, 1343, 1346
BstV2I GAAGAC 2 cut(s) 396, 549
BstX2I RGATCY 1 cut(s) 1222
BstXI CCANNNNNNTGG 1 cut(s) 1246
BstYI RGATCY 1 cut(s) 1222
Bsu15I ATCGAT 1 cut(s) 629
BsuRI GGCC 3 cut(s) 901, 992, 1277
BsuTUI ATCGAT 1 cut(s) 629
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 1 cut(s) 450
BtsIMutI CAGTG 1 cut(s) 1107
BveI ACCTGC 1 cut(s) 435
Cac8I GCNNGC 1 cut(s) 822
CciI TCATGA 1 cut(s) 294
CfoI GCGC 2 cut(s) 89, 558
Cfr13I GGNCC 3 cut(s) 900, 991, 1312
ClaI ATCGAT 1 cut(s) 629
CseI GACGC 1 cut(s) 1165
Csp6I GTAC 4 cut(s) 577, 860, 1007, 1234
CviAII CATG 8 cut(s) 284, 295, 313, 370, 619, 904, 1141, 1369
CviQI GTAC 4 cut(s) 577, 860, 1007, 1234
DdeI CTNAG 4 cut(s) 477, 485, 890, 1262
DpnI GATC 7 cut(s) 72, 195, 288, 474, 683, 975, 1224
DpnII GATC 7 cut(s) 70, 193, 286, 472, 681, 973, 1222
DraIII CACNNNGTG 1 cut(s) 655
Eam1104I CTCTTC 2 cut(s) 536, 738
EarI CTCTTC 2 cut(s) 536, 738
EciI GGCGGA 2 cut(s) 443, 882
Eco130I CCWWGG 3 cut(s) 369, 792, 1272
Eco24I GRGCYC 2 cut(s) 858, 1060
Eco31I GGTCTC 1 cut(s) 342
Eco32I GATATC 2 cut(s) 318, 1098
Eco47I GGWCC 1 cut(s) 1312
Eco47III AGCGCT 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 758
Eco88I CYCGRG 1 cut(s) 547
EcoRI GAATTC 1 cut(s) 885
EcoRII CCWGG 1 cut(s) 1245
EcoRV GATATC 2 cut(s) 318, 1098
EcoT14I CCWWGG 3 cut(s) 369, 792, 1272
EcoT38I GRGCYC 2 cut(s) 858, 1060
ErhI CCWWGG 3 cut(s) 369, 792, 1272
Esp3I CGTCTC 1 cut(s) 306
FaeI CATG 8 cut(s) 287, 298, 316, 373, 622, 907, 1144, 1372
FaqI GGGAC 1 cut(s) 1325
FatI CATG 8 cut(s) 283, 294, 312, 369, 618, 903, 1140, 1368
FauNDI CATATG 1 cut(s) 364
FbaI TGATCA 2 cut(s) 286, 973
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 7 cut(s) 245, 671, 734, 818, 1329, 1332, 1335
FokI GGATG 1 cut(s) 437
FriOI GRGCYC 2 cut(s) 858, 1060
Fsp4HI GCNGC 7 cut(s) 245, 671, 734, 818, 1329, 1332, 1335
GlaI GCGC 2 cut(s) 88, 557
GluI GCNGC 7 cut(s) 245, 671, 734, 818, 1329, 1332, 1335
GsuI CTGGAG 1 cut(s) 965
HaeII RGCGCY 1 cut(s) 90
HaeIII GGCC 3 cut(s) 901, 992, 1277
HapII CCGG 2 cut(s) 334, 1180
HgaI GACGC 1 cut(s) 1165
HhaI GCGC 2 cut(s) 89, 558
Hin1I GRCGYC 1 cut(s) 299
Hin1II CATG 8 cut(s) 287, 298, 316, 373, 622, 907, 1144, 1372
Hin6I GCGC 2 cut(s) 87, 556
HinP1I GCGC 2 cut(s) 87, 556
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 2 cut(s) 597, 1268
HpaII CCGG 2 cut(s) 334, 1180
HphI GGTGA 4 cut(s) 181, 718, 889, 1216
Hpy166II GTNNAC 3 cut(s) 439, 517, 577
Hpy188I TCNGA 6 cut(s) 94, 198, 488, 541, 686, 891
Hpy188III TCNNGA 5 cut(s) 74, 295, 380, 594, 1294
Hpy8I GTNNAC 3 cut(s) 439, 517, 577
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 9 cut(s) 65, 196, 360, 733, 844, 913, 1130, 1195, 1294
HpyCH4III ACNGT 4 cut(s) 20, 611, 730, 1031
HpyCH4IV ACGT 2 cut(s) 299, 1197
HpyCH4V TGCA 9 cut(s) 171, 183, 244, 283, 430, 649, 802, 847, 1331
HpyF10VI GCNNNNNNNGC 8 cut(s) 86, 244, 844, 853, 949, 1055, 1283, 1334
HpyF3I CTNAG 4 cut(s) 477, 485, 890, 1262
HpySE526I ACGT 2 cut(s) 299, 1197
Hsp92I GRCGYC 1 cut(s) 299
Hsp92II CATG 8 cut(s) 287, 298, 316, 373, 622, 907, 1144, 1372
HspAI GCGC 2 cut(s) 87, 556
Ksp22I TGATCA 2 cut(s) 286, 973
Kzo9I GATC 7 cut(s) 70, 193, 286, 472, 681, 973, 1222
LguI GCTCTTC 1 cut(s) 738
LmnI GCTCC 4 cut(s) 853, 940, 949, 1167
Lsp1109I GCAGC 5 cut(s) 256, 829, 1315, 1343, 1346
LweI GCATC 4 cut(s) 67, 1010, 1197, 1351
MaeII ACGT 2 cut(s) 299, 1197
MaeIII GTNAC 2 cut(s) 420, 480
MalI GATC 7 cut(s) 72, 195, 288, 474, 683, 975, 1224
MbiI CCGCTC 1 cut(s) 670
MboI GATC 7 cut(s) 70, 193, 286, 472, 681, 973, 1222
MflI RGATCY 1 cut(s) 1222
MhlI GDGCHC 3 cut(s) 750, 858, 1060
MluCI AATT 6 cut(s) 172, 839, 870, 885, 910, 1254
MmeI TCCRAC 1 cut(s) 1013
MroXI GAANNNNTTC 3 cut(s) 329, 589, 1119
MseI TTAA 2 cut(s) 225, 465
MslI CAYNNNNRTG 1 cut(s) 311
MspA1I CMGCKG 2 cut(s) 736, 820
MspI CCGG 2 cut(s) 334, 1180
MspR9I CCNGG 1 cut(s) 1247
Mva1269I GAATGC 1 cut(s) 209
MvaI CCWGG 1 cut(s) 1247
MwoI GCNNNNNNNGC 8 cut(s) 86, 244, 844, 853, 949, 1055, 1283, 1334
NcoI CCATGG 1 cut(s) 369
NdeI CATATG 1 cut(s) 364
NdeII GATC 7 cut(s) 70, 193, 286, 472, 681, 973, 1222
NlaIII CATG 8 cut(s) 287, 298, 316, 373, 622, 907, 1144, 1372
NlaIV GGNNCC 3 cut(s) 855, 1224, 1313
NmuCI GTSAC 1 cut(s) 420
PagI TCATGA 1 cut(s) 294
PaqCI CACCTGC 1 cut(s) 435
PciSI GCTCTTC 1 cut(s) 738
PctI GAATGC 1 cut(s) 209
PdmI GAANNNNTTC 3 cut(s) 329, 589, 1119
PfeI GAWTC 2 cut(s) 597, 1268
PkrI GCNGC 7 cut(s) 246, 672, 735, 819, 1330, 1333, 1336
Psp6I CCWGG 1 cut(s) 1245
PspGI CCWGG 1 cut(s) 1245
PspN4I GGNNCC 3 cut(s) 855, 1224, 1313
PspPI GGNCC 3 cut(s) 900, 991, 1312
PstI CTGCAG 2 cut(s) 432, 1333
PsuI RGATCY 1 cut(s) 1222
PvuII CAGCTG 1 cut(s) 820
RsaI GTAC 4 cut(s) 578, 861, 1008, 1235
RsaNI GTAC 4 cut(s) 577, 860, 1007, 1234
RseI CAYNNNNRTG 1 cut(s) 311
SapI GCTCTTC 1 cut(s) 738
SaqAI TTAA 2 cut(s) 225, 465
SatI GCNGC 7 cut(s) 245, 671, 734, 818, 1329, 1332, 1335
Sau3AI GATC 7 cut(s) 70, 193, 286, 472, 681, 973, 1222
Sau96I GGNCC 3 cut(s) 900, 991, 1312
ScrFI CCNGG 1 cut(s) 1247
SduI GDGCHC 3 cut(s) 750, 858, 1060
SfaNI GCATC 4 cut(s) 67, 1010, 1197, 1351
SfcI CTRYAG 2 cut(s) 428, 1329
SinI GGWCC 1 cut(s) 1312
SmiMI CAYNNNNRTG 1 cut(s) 311
SmlI CTYRAG 2 cut(s) 695, 1292
SmoI CTYRAG 2 cut(s) 695, 1292
Sse9I AATT 6 cut(s) 172, 839, 870, 885, 910, 1254
SsiI CCGC 4 cut(s) 454, 670, 734, 867
SspI AATATT 1 cut(s) 964
StyD4I CCNGG 1 cut(s) 1245
StyI CCWWGG 3 cut(s) 369, 792, 1272
TaaI ACNGT 4 cut(s) 20, 611, 730, 1031
TaiI ACGT 2 cut(s) 302, 1200
TaqI TCGA 6 cut(s) 75, 254, 269, 595, 629, 1212
TaqII GACCGA 1 cut(s) 1329
TasI AATT 6 cut(s) 172, 839, 870, 885, 910, 1254
TatI WGTACW 1 cut(s) 1233
TauI GCSGC 2 cut(s) 673, 736
TfiI GAWTC 2 cut(s) 597, 1268
Tru1I TTAA 2 cut(s) 225, 465
Tru9I TTAA 2 cut(s) 225, 465
TscAI CASTG 1 cut(s) 1107
TseFI GTSAC 1 cut(s) 420
TseI GCWGC 5 cut(s) 244, 817, 1328, 1331, 1334
Tsp45I GTSAC 1 cut(s) 420
TspDTI ATGAA 5 cut(s) 156, 166, 402, 647, 1357
TspRI CASTG 1 cut(s) 1107
VpaK11BI GGWCC 1 cut(s) 1312
XapI RAATTY 1 cut(s) 885
XcmI CCANNNNNNNNNTGG 1 cut(s) 367
XmiI GTMKAC 1 cut(s) 438
XmnI GAANNNNTTC 3 cut(s) 329, 589, 1119
ZraI GACGTC 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.