Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0015544

Physical Location & Seq

Genomic Coordinates Reverse (-)

17419157 .. 17421380

Gene Structure 2224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G169200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGGGTGTTCAAAACAACACACCAAGAGCTTCACCAAGGAGAAAATCTACCACCCTTCAACACCTCTTTGATCTTGATTCAAAGACTGAAACTGGTATTAATGGAAAGAAGACTGGCACCACCAATATTGGGTGTTCTTCTTCCAACTTGGAAAATGAGGAAATTCTTTCTTCTATTTCCTTTTGCACCTTTGTCTTCACCTTCACTGATCCAAGTGAATGTGCTACACAACAAGAACTCAAAAGGAACAAGCTTTTGCAGCTTCTGTCTGTGGTAAAATCCTCAAAGAAGCCTCTGCATGATCAAGTTATGTCATCTCTCATTTCTATGATATCTTTGAACCTCTTTAGGCCTCTCCCTCCTCCTTCCAATCCCTCCAGTGCTGCAGAATTCCCTGATGATGAAGACCACATATCTACCTTTTCCCCATTATGGTCACACCTGCAGTTAGTTTATGACATCCTCATCCGGCTCGTGATCAACACAGATCCTAAGTTACTTAGAGGTTACATTGATAACCAATTTGTTGTCAATCTTCTTGCCTTGTTCCAATCAGAAGACCCGAGGGAACGTGATAGTTTGAAGAATGTGTACCACAGAATATATTCCAGATTCACATTCTACCGTTCGTTCATGAGGAAATCGATGAACGATGTGTTTTTGCACTATGTGTTTGAGACAGAGAGGCATTGTGGGATCAGAGAGTTGCTTGAGATATGGGGAAGCATCATCAATGGCTTTACAGTTCCACTAAAAGAAGAGCACAAGCTGTTCTTGATGAGGGTGCTTATTCCTTTTCACAAGACCAAGGGGATGCAAGCTTACCATAGGCAGCTGGCTTATTGCGTGTCTCAGTTTGTGCAGAAGGAGCCTGTGCTTGGTGGGATTGTTGTTAGAGGGATTTTGAGGTATTGGCCTGTGACTAATTGCCAGAAGGAGGTTTTGCTGATTGGGGAATTGGAGGAACTGGTGGAGAATATTGACCCTGATCAATATAGGAAGTTAGCCCTGCCTTTATGTCTCCAGATAACAAGATGCTTGAACAGTTGGAACTCACAGGTAGCGGAGCGAGCACTCTACGTTTGGAACAACGAGCAGTTCGTAAAGATGATATCGGTGGCAATGGAGGAAGTGTTTCCAGTTGTGGTTGAAGGAATGGAGAAGAACTTAAAGTGGCACTGGAGCAAAAGCGTCCGACAATTGACAGAAAACGTGAAGGTGATGCTAGAAGAAATGGATCCAGTTTTGCACTCCAAGTGCCTTGAAGAAATTGAGCTCAGAGAATCCAAAGCTCACCAAGCAGAAATCAAGAGGAAGGAGAAATGGGACAGAATAGAAATGGCAGCAGCCCAGCATCACAATCAGCATCAGTTCCTCCAACCACCACATTTCTTATGTGTTTCGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0008287 GO:0019220 GO:0019222 GO:0031323 GO:0032991 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051174 GO:0065007 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

B56

Protein Analysis

470

Amino Acids

54.53

Weight (kDa)

7.28

Isoelectric Point (pI)

51.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15670
malus_domestica	MD05G1125100.v1.1
prunus_persica	Prupe.8G169200_v2.0.a1
pyrus_communis	pycom05g11940 pycom10g10970
rosa_chinensis	RchiOBHm_Chr6g0278971
rosa_laevigata	RLG00000013179
rosa_multiflora	Rmu_sc0002080.1_g000042 Rmu_sc0009618.1_g000015
rosa_roxburghii	Rroxscaffold_7G00189300
rosa_rugosa	Rorug06G0120500
rosa_samantha	Rh6AG229200 Rh6BG234400 Rh6CG236600 Rh6DG228200
rosa_wichuraiana	Rw6G020070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	450
Acc36I	ACCTGC	1 cut(s)	450
AccB1I	GGYRCC	1 cut(s)	116
AciI	CCGC	1 cut(s)	1064
AclWI	GGATC	5 cut(s)	203, 482, 704, 1232, 1245
AcsI	RAATTY	2 cut(s)	162, 389
AdeI	CACNNNGTG	1 cut(s)	670
AfaI	GTAC	1 cut(s)	593
AfiI	CCNNNNNNNGG	4 cut(s)	129, 432, 878, 937
AgsI	TTSAA	8 cut(s)	11, 59, 81, 340, 583, 1042, 1151, 1265
AluBI	AGCT	8 cut(s)	29, 253, 262, 769, 821, 835, 1276, 1292
AluI	AGCT	8 cut(s)	29, 253, 262, 769, 821, 835, 1276, 1292
Alw21I	GWGCWC	3 cut(s)	765, 1075, 1278
Alw26I	GTCTC	3 cut(s)	671, 855, 1025
AlwI	GGATC	5 cut(s)	203, 482, 704, 1232, 1245
AlwNI	CAGNNNCTG	1 cut(s)	265
Ama87I	CYCGRG	1 cut(s)	562
AoxI	GGCC	2 cut(s)	350, 914
ApeKI	GCWGC	5 cut(s)	259, 383, 832, 1343, 1346
ApoI	RAATTY	2 cut(s)	162, 389
AseI	ATTAAT	1 cut(s)	99
Asp700I	GAANNNNTTC	2 cut(s)	604, 1134
AsuHPI	GGTGA	4 cut(s)	24, 190, 1231, 1286
AvaI	CYCGRG	1 cut(s)	562
BamHI	GGATCC	1 cut(s)	1237
BanI	GGYRCC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	1278
BarI	GAAGNNNNNNTAC	2 cut(s)	575, 607
BauI	CACGAG	1 cut(s)	473
BbsI	GAAGAC	4 cut(s)	116, 187, 411, 564
Bbv12I	GWGCWC	3 cut(s)	765, 1075, 1278
BbvI	GCAGC	5 cut(s)	271, 370, 844, 1355, 1358
BclI	TGATCA	3 cut(s)	301, 477, 988
BcoDI	GTCTC	3 cut(s)	671, 855, 1025
BfaI	CTAG	1 cut(s)	1226
BfmI	CTRYAG	2 cut(s)	384, 443
BfuAI	ACCTGC	1 cut(s)	450
BisI	GCNGC	5 cut(s)	260, 384, 833, 1344, 1347
BlsI	GCNGC	5 cut(s)	261, 385, 834, 1345, 1348
BmeT110I	CYCGRG	1 cut(s)	562
BmiI	GGNNCC	3 cut(s)	118, 870, 1239
BmsI	GCATC	6 cut(s)	735, 804, 1025, 1212, 1363, 1375
BpiI	GAAGAC	4 cut(s)	116, 187, 411, 564
BpmI	CTGGAG	3 cut(s)	361, 1007, 1201
BpuEI	CTTGAG	1 cut(s)	731
Bsa29I	ATCGAT	1 cut(s)	644
BsaJI	CCNNGG	3 cut(s)	35, 563, 807
BsaXI	ACNNNNNCTCC	2 cut(s)	1118, 1148
Bsc4I	CCNNNNNNNGG	4 cut(s)	129, 432, 878, 937
Bse1I	ACTGG	7 cut(s)	97, 118, 378, 972, 1139, 1184, 1241
Bse3DI	GCAATG	1 cut(s)	1128
BseCI	ATCGAT	1 cut(s)	644
BseDI	CCNNGG	3 cut(s)	35, 563, 807
BseGI	GGATG	3 cut(s)	459, 465, 819
BseLI	CCNNNNNNNGG	4 cut(s)	129, 432, 878, 937
BseMI	GCAATG	1 cut(s)	1128
BseMII	CTCAG	2 cut(s)	866, 1291
BseNI	ACTGG	7 cut(s)	97, 118, 378, 972, 1139, 1184, 1241
BseRI	GAGGAG	1 cut(s)	351
BseXI	GCAGC	5 cut(s)	271, 370, 844, 1355, 1358
BseYI	CCCAGC	1 cut(s)	1350
BsgI	GTGCAG	1 cut(s)	881
BshFI	GGCC	2 cut(s)	352, 916
BshNI	GGYRCC	1 cut(s)	116
BshVI	ATCGAT	1 cut(s)	644
BsiHKAI	GWGCWC	3 cut(s)	765, 1075, 1278
BsiHKCI	CYCGRG	1 cut(s)	562
BsiSI	CCGG	1 cut(s)	469
BslFI	GGGAC	1 cut(s)	1340
BslI	CCNNNNNNNGG	4 cut(s)	129, 432, 878, 937
BsmAI	GTCTC	3 cut(s)	671, 855, 1025
BsmFI	GGGAC	1 cut(s)	1340
BsnI	GGCC	2 cut(s)	352, 916
BsoBI	CYCGRG	1 cut(s)	562
Bsp1286I	GDGCHC	3 cut(s)	765, 1075, 1278
Bsp143I	GATC	8 cut(s)	70, 208, 301, 477, 487, 696, 988, 1237
BspACI	CCGC	1 cut(s)	1064
BspANI	GGCC	2 cut(s)	352, 916
BspCNI	CTCAG	2 cut(s)	865, 1290
BspDI	ATCGAT	1 cut(s)	644
BspHI	TCATGA	1 cut(s)	633
BspLI	GGNNCC	3 cut(s)	118, 870, 1239
BspMAI	CTGCAG	2 cut(s)	388, 447
BspMI	ACCTGC	1 cut(s)	450
BspPI	GGATC	5 cut(s)	203, 482, 704, 1232, 1245
BspQI	GCTCTTC	1 cut(s)	753
BspT107I	GGYRCC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	1128
BsrI	ACTGG	7 cut(s)	97, 118, 378, 972, 1139, 1184, 1241
BssECI	CCNNGG	3 cut(s)	35, 563, 807
BssMI	GATC	8 cut(s)	70, 208, 301, 477, 487, 696, 988, 1237
BssSI	CACGAG	1 cut(s)	473
BssT1I	CCWWGG	2 cut(s)	35, 807
Bst2BI	CACGAG	1 cut(s)	473
Bst4CI	ACNGT	3 cut(s)	626, 745, 1046
Bst6I	CTCTTC	1 cut(s)	753
BstC8I	GCNNGC	3 cut(s)	819, 837, 1071
BstDEI	CTNAG	4 cut(s)	492, 500, 852, 1277
BstF5I	GGATG	3 cut(s)	459, 465, 819
BstKTI	GATC	8 cut(s)	73, 211, 304, 480, 490, 699, 991, 1240
BstMAI	GTCTC	3 cut(s)	671, 855, 1025
BstMBI	GATC	8 cut(s)	70, 208, 301, 477, 487, 696, 988, 1237
BstMWI	GCNNNNNNNGC	4 cut(s)	259, 868, 1070, 1298
BstSFI	CTRYAG	2 cut(s)	384, 443
BstV1I	GCAGC	5 cut(s)	271, 370, 844, 1355, 1358
BstV2I	GAAGAC	4 cut(s)	116, 187, 411, 564
BstX2I	RGATCY	2 cut(s)	487, 1237
BstYI	RGATCY	2 cut(s)	487, 1237
Bsu15I	ATCGAT	1 cut(s)	644
BsuRI	GGCC	2 cut(s)	352, 916
BsuTUI	ATCGAT	1 cut(s)	644
BtsCI	GGATG	3 cut(s)	459, 465, 819
BtsIMutI	CAGTG	3 cut(s)	204, 385, 1177
BveI	ACCTGC	1 cut(s)	450
Cac8I	GCNNGC	3 cut(s)	819, 837, 1071
CaiI	CAGNNNCTG	1 cut(s)	265
CciI	TCATGA	1 cut(s)	633
ClaI	ATCGAT	1 cut(s)	644
CseI	GACGC	1 cut(s)	1180
Csp6I	GTAC	1 cut(s)	592
CspCI	CAANNNNNGTGG	2 cut(s)	109, 144
CviAII	CATG	2 cut(s)	299, 634
CviQI	GTAC	1 cut(s)	592
DdeI	CTNAG	4 cut(s)	492, 500, 852, 1277
DpnI	GATC	8 cut(s)	72, 210, 303, 479, 489, 698, 990, 1239
DpnII	GATC	8 cut(s)	70, 208, 301, 477, 487, 696, 988, 1237
DraIII	CACNNNGTG	1 cut(s)	670
Eam1104I	CTCTTC	1 cut(s)	753
EarI	CTCTTC	1 cut(s)	753
Ecl136II	GAGCTC	1 cut(s)	1276
Eco130I	CCWWGG	2 cut(s)	35, 807
Eco147I	AGGCCT	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	1278
Eco32I	GATATC	2 cut(s)	333, 1113
Eco53kI	GAGCTC	1 cut(s)	1276
Eco88I	CYCGRG	1 cut(s)	562
EcoICRI	GAGCTC	1 cut(s)	1276
EcoRI	GAATTC	1 cut(s)	389
EcoRV	GATATC	2 cut(s)	333, 1113
EcoT14I	CCWWGG	2 cut(s)	35, 807
EcoT38I	GRGCYC	1 cut(s)	1278
ErhI	CCWWGG	2 cut(s)	35, 807
FaeI	CATG	2 cut(s)	302, 637
FalI	AAGNNNNNCTT	2 cut(s)	758, 790
FaqI	GGGAC	1 cut(s)	1340
FatI	CATG	2 cut(s)	298, 633
FbaI	TGATCA	3 cut(s)	301, 477, 988
Fnu4HI	GCNGC	5 cut(s)	260, 384, 833, 1344, 1347
FokI	GGATG	3 cut(s)	446, 452, 826
FriOI	GRGCYC	1 cut(s)	1278
Fsp4HI	GCNGC	5 cut(s)	260, 384, 833, 1344, 1347
FspBI	CTAG	1 cut(s)	1226
GluI	GCNGC	5 cut(s)	260, 384, 833, 1344, 1347
GsaI	CCCAGC	1 cut(s)	1354
GsuI	CTGGAG	3 cut(s)	361, 1007, 1201
HaeIII	GGCC	2 cut(s)	352, 916
HapII	CCGG	1 cut(s)	469
HgaI	GACGC	1 cut(s)	1180
Hin1II	CATG	2 cut(s)	302, 637
HindIII	AAGCTT	2 cut(s)	251, 819
HinfI	GANTC	3 cut(s)	77, 612, 1283
HpaII	CCGG	1 cut(s)	469
HphI	GGTGA	4 cut(s)	24, 190, 1231, 1286
Hpy166II	GTNNAC	1 cut(s)	592
Hpy188I	TCNGA	4 cut(s)	556, 701, 1196, 1280
Hpy188III	TCNNGA	7 cut(s)	74, 475, 609, 634, 775, 1024, 1309
Hpy8I	GTNNAC	1 cut(s)	592
HpyAV	CCTTC	8 cut(s)	65, 211, 375, 859, 928, 1145, 1210, 1309
HpyCH4III	ACNGT	3 cut(s)	626, 745, 1046
HpyCH4IV	ACGT	3 cut(s)	571, 1080, 1212
HpyCH4V	TGCA	9 cut(s)	186, 259, 298, 386, 445, 664, 817, 862, 1249
HpyF10VI	GCNNNNNNNGC	4 cut(s)	259, 868, 1070, 1298
HpyF3I	CTNAG	4 cut(s)	492, 500, 852, 1277
HpySE526I	ACGT	3 cut(s)	571, 1080, 1212
Hsp92II	CATG	2 cut(s)	302, 637
Ksp22I	TGATCA	3 cut(s)	301, 477, 988
Kzo9I	GATC	8 cut(s)	70, 208, 301, 477, 487, 696, 988, 1237
LguI	GCTCTTC	1 cut(s)	753
LmnI	GCTCC	3 cut(s)	868, 1066, 1182
Lsp1109I	GCAGC	5 cut(s)	271, 370, 844, 1355, 1358
LweI	GCATC	6 cut(s)	735, 804, 1025, 1212, 1363, 1375
MaeI	CTAG	1 cut(s)	1226
MaeII	ACGT	3 cut(s)	571, 1080, 1212
MaeIII	GTNAC	4 cut(s)	435, 495, 506, 919
MalI	GATC	8 cut(s)	72, 210, 303, 479, 489, 698, 990, 1239
MboI	GATC	8 cut(s)	70, 208, 301, 477, 487, 696, 988, 1237
MfeI	CAATTG	1 cut(s)	1199
MflI	RGATCY	2 cut(s)	487, 1237
MhlI	GDGCHC	3 cut(s)	765, 1075, 1278
MluCI	AATT	7 cut(s)	162, 389, 521, 925, 956, 1199, 1269
MmeI	TCCRAC	4 cut(s)	168, 1028, 1219, 1402
MroXI	GAANNNNTTC	2 cut(s)	604, 1134
MseI	TTAA	2 cut(s)	99, 1169
MslI	CAYNNNNRTG	1 cut(s)	326
MspA1I	CMGCKG	1 cut(s)	835
MspI	CCGG	1 cut(s)	469
MunI	CAATTG	1 cut(s)	1199
MwoI	GCNNNNNNNGC	4 cut(s)	259, 868, 1070, 1298
NdeII	GATC	8 cut(s)	70, 208, 301, 477, 487, 696, 988, 1237
NlaIII	CATG	2 cut(s)	302, 637
NlaIV	GGNNCC	3 cut(s)	118, 870, 1239
NmuCI	GTSAC	2 cut(s)	435, 919
PagI	TCATGA	1 cut(s)	633
PaqCI	CACCTGC	1 cut(s)	450
PceI	AGGCCT	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	753
PcsI	WCGNNNNNNNCGW	1 cut(s)	1098
PdmI	GAANNNNTTC	2 cut(s)	604, 1134
PfeI	GAWTC	3 cut(s)	77, 612, 1283
PkrI	GCNGC	5 cut(s)	261, 385, 834, 1345, 1348
PshBI	ATTAAT	1 cut(s)	99
Psp124BI	GAGCTC	1 cut(s)	1278
PspFI	CCCAGC	1 cut(s)	1350
PspN4I	GGNNCC	3 cut(s)	118, 870, 1239
PstI	CTGCAG	2 cut(s)	388, 447
PstNI	CAGNNNCTG	1 cut(s)	265
PsuI	RGATCY	2 cut(s)	487, 1237
PvuII	CAGCTG	1 cut(s)	835
RsaI	GTAC	1 cut(s)	593
RsaNI	GTAC	1 cut(s)	592
RseI	CAYNNNNRTG	1 cut(s)	326
SacI	GAGCTC	1 cut(s)	1278
SapI	GCTCTTC	1 cut(s)	753
SaqAI	TTAA	2 cut(s)	99, 1169
SatI	GCNGC	5 cut(s)	260, 384, 833, 1344, 1347
Sau3AI	GATC	8 cut(s)	70, 208, 301, 477, 487, 696, 988, 1237
SduI	GDGCHC	3 cut(s)	765, 1075, 1278
SfaNI	GCATC	6 cut(s)	735, 804, 1025, 1212, 1363, 1375
SfcI	CTRYAG	2 cut(s)	384, 443
SmiMI	CAYNNNNRTG	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
Sse9I	AATT	7 cut(s)	162, 389, 521, 925, 956, 1199, 1269
SseBI	AGGCCT	1 cut(s)	352
SsiI	CCGC	1 cut(s)	1064
SspI	AATATT	2 cut(s)	127, 979
SspMI	CTAG	1 cut(s)	1226
SstI	GAGCTC	1 cut(s)	1278
StuI	AGGCCT	1 cut(s)	352
StyI	CCWWGG	2 cut(s)	35, 807
TaaI	ACNGT	3 cut(s)	626, 745, 1046
TaiI	ACGT	3 cut(s)	574, 1083, 1215
TaqI	TCGA	1 cut(s)	644
TasI	AATT	7 cut(s)	162, 389, 521, 925, 956, 1199, 1269
TfiI	GAWTC	3 cut(s)	77, 612, 1283
Tru1I	TTAA	2 cut(s)	99, 1169
Tru9I	TTAA	2 cut(s)	99, 1169
TscAI	CASTG	3 cut(s)	211, 385, 1184
TseFI	GTSAC	2 cut(s)	435, 919
TseI	GCWGC	5 cut(s)	259, 383, 832, 1343, 1346
Tsp45I	GTSAC	2 cut(s)	435, 919
TspDTI	ATGAA	3 cut(s)	417, 622, 662
TspRI	CASTG	3 cut(s)	211, 385, 1184
VspI	ATTAAT	1 cut(s)	99
XapI	RAATTY	2 cut(s)	162, 389
XmnI	GAANNNNTTC	2 cut(s)	604, 1134
XspI	CTAG	1 cut(s)	1226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.