Rroxscaffold_7G00189300

Serine threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
29031642 .. 29033644
2003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00189300.1

Sequence Viewer

Length: 1404 bp
ATGGGTGCGCAAAGTAACACTACTCCGAAAGTTTCACCTAGAGTTTCGACGAGGAAAAGATCAACAACCCTTCAACACCTCTTTGATCTTGATTCCAAGGGCAACAAGATTGCCAACAACAATGTTGGGAGCTCATCATCATCTTCTTCATCTTCTTTCAACTCAGAGCACGAAGAAACTCTATCTGCAGTGTCACACTGCACTTTCGTTTTCGCCTTCACTGAAAATGAATGTCCTACACAACAGGAACTCAAGAGGCAAAAACTCTTGCAGCTCCTTTCCTTTGTGAAGACCAATAAAAATTCAATTCCTGTGCAAGTTCTGTCGTCTCTCATTTCCATGATATCAGCCAACTTGTTCAGGCCTCTCCCTCCTCCTTCCAATCCCTCCATCACTGCAGACTTTCCGGATGATGAAGACACCATGTCAGCTTATTCTCCGTTATGGTCACATCTTCAGTTGATTTATGACATCCTCATACGACTAGTGATCAACAACGACCCCAAGGTACTTCGTAAGTACATTGATAACCAATTTGTTACCAATCTCCTTGCTCTTTTCCAATCCGAAGACCCTAGGGAACGCGACAGCTTGAAGAATGTCTACCACCGGATATATTCCAGGTTCACATTCTACCGAGCCTTCATGAGGAAATCCATGAATGATGTGTTCTTGCACTATGTTTTTGAGTCAGAGAGGCATTGTGGGATTAGAGAGTTGCTTGAGATATGGGGAAGCATCATTAATGGCTTCACCATGCCGCTTAAGGAAGAGCACAAGCTGTTCTTGATGAGGGTACTTGTTCCTTTTCACAAGACGAAAGGAATGCAGGCTTATCATAGGCAATTGGCTTATTGTGTGTCTCAGTTTGTCCAGAAGGAGCCGGTGCTCGGTGGGATTGTTGTTAGAGGGATTCTGAAGTATTGGCCTGTGACTAATTGCCAGAAGGAGGTTTTGCTGATTGGGGAACTTGAGGAACTTGTCGAGAATATTGATCCTGATCAGTATAGGAAGCTAGCTGTGCCTTTATGTAATCAGATTACAAGATGCTTGAACAGTTGGAACTCACAGGTAGCGGAGCGAGCCCTTTATGTTTGGAACAATGAGCATTTTGTGAAGATGATATCAGTGGCAATGGAGGAAGTGTTTCCAGTAGTAGTTGAAGGCATGGAGAAGAACTTGAAGTGGCATTGGAGCAAAAGCGTGCGACAATTGACAGAAAACGTGAAAGTGATGCTTGAAGAAATGGACCCCATTTTGTACTCGAAATGCCTCCAGGAAATCGAGCTCAGAGGATCCAAGGCTCACCAAGCTGAGATCAAGAGGAAGAAGAATTGGGACAGAATAGAAATGGCAGCAGCTCAGCAACAGTATTTCCAACCACCACATTTCATATGTGTCTAA

Protein Analysis

467

Amino Acids

54.14

Weight (kDa)

8.58

Isoelectric Point (pI)

49.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B56 PF01603 54 - 453 1.3e-142 Protein phosphatase 2A regulatory B subunit (B56 family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015544)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 9
AccI GTMKAC 1 cut(s) 603
AccII CGCG 1 cut(s) 585
AccIII TCCGGA 1 cut(s) 406
AciI CCGC 2 cut(s) 761, 1076
AclWI GGATC 3 cut(s) 989, 1290, 1303
AcsI RAATTY 1 cut(s) 301
AcuI CTGAAG 2 cut(s) 440, 938
AfaI GTAC 4 cut(s) 510, 521, 798, 1262
AfiI CCNNNNNNNGG 3 cut(s) 648, 890, 949
AflII CTTAAG 1 cut(s) 764
AgsI TTSAA 8 cut(s) 74, 160, 306, 595, 1054, 1163, 1183, 1241
AhdI GACNNNNNGTC 1 cut(s) 424
AhlI ACTAGT 1 cut(s) 484
AjnI CCWGG 2 cut(s) 620, 1275
Alw21I GWGCWC 5 cut(s) 134, 171, 777, 891, 1290
Alw26I GTCTC 2 cut(s) 333, 867
AlwI GGATC 3 cut(s) 989, 1290, 1303
Aor13HI TCCGGA 1 cut(s) 406
AoxI GGCC 2 cut(s) 362, 926
ApeKI GCWGC 3 cut(s) 271, 1355, 1358
ApoI RAATTY 1 cut(s) 301
AseI ATTAAT 1 cut(s) 744
Asp700I GAANNNNTTC 1 cut(s) 1146
AspA2I CCTAGG 1 cut(s) 575
AspLEI GCGC 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 1249
AsuHPI GGTGA 3 cut(s) 27, 745, 1298
AsuNHI GCTAGC 1 cut(s) 1015
AvaII GGWCC 1 cut(s) 1249
AvrII CCTAGG 1 cut(s) 575
BamHI GGATCC 1 cut(s) 1295
BanII GRGCYC 3 cut(s) 134, 1087, 1290
BarI GAAGNNNNNNTAC 2 cut(s) 587, 619
BbsI GAAGAC 3 cut(s) 296, 423, 576
Bbv12I GWGCWC 5 cut(s) 134, 171, 777, 891, 1290
BbvI GCAGC 3 cut(s) 283, 1367, 1370
BccI CCATC 1 cut(s) 398
BcgI CGANNNNNNTGC 2 cut(s) 808, 842
BciT130I CCWGG 2 cut(s) 622, 1277
BclI TGATCA 2 cut(s) 489, 1000
BcoDI GTCTC 2 cut(s) 333, 867
BcuI ACTAGT 1 cut(s) 484
BfaI CTAG 4 cut(s) 39, 485, 576, 1016
BfmI CTRYAG 2 cut(s) 186, 396
BfrI CTTAAG 1 cut(s) 764
BisI GCNGC 4 cut(s) 272, 761, 1356, 1359
BlnI CCTAGG 1 cut(s) 575
BlpI GCTNAGC 1 cut(s) 1362
BlsI GCNGC 4 cut(s) 273, 762, 1357, 1360
Bme1390I CCNGG 2 cut(s) 622, 1277
Bme18I GGWCC 1 cut(s) 1249
BmeRI GACNNNNNGTC 1 cut(s) 424
BmgT120I GGNCC 1 cut(s) 1249
BmiI GGNNCC 3 cut(s) 882, 1251, 1297
BmrFI CCNGG 2 cut(s) 622, 1277
BmsI GCATC 3 cut(s) 747, 1037, 1224
BmtI GCTAGC 1 cut(s) 1019
BpiI GAAGAC 3 cut(s) 296, 423, 576
BpmI CTGGAG 1 cut(s) 1259
Bpu1102I GCTNAGC 1 cut(s) 1362
BpuEI CTTGAG 3 cut(s) 236, 743, 992
BsaBI GATNNNNATC 1 cut(s) 999
BsaJI CCNNGG 4 cut(s) 96, 504, 575, 1299
BsaWI WCCGGW 2 cut(s) 406, 609
BsaXI ACNNNNNCTCC 2 cut(s) 1130, 1160
Bsc4I CCNNNNNNNGG 3 cut(s) 648, 890, 949
Bse118I RCCGGY 1 cut(s) 883
Bse1I ACTGG 1 cut(s) 1151
Bse3DI GCAATG 1 cut(s) 1140
Bse8I GATNNNNATC 1 cut(s) 999
BseAI TCCGGA 1 cut(s) 406
BseBI CCWGG 2 cut(s) 622, 1277
BseDI CCNNGG 4 cut(s) 96, 504, 575, 1299
BseGI GGATG 2 cut(s) 415, 471
BseJI GATNNNNATC 1 cut(s) 999
BseLI CCNNNNNNNGG 3 cut(s) 648, 890, 949
BseMI GCAATG 1 cut(s) 1140
BseMII CTCAG 5 cut(s) 177, 878, 1303, 1305, 1376
BseNI ACTGG 1 cut(s) 1151
BseRI GAGGAG 1 cut(s) 363
BseXI GCAGC 3 cut(s) 283, 1367, 1370
BsgI GTGCAG 1 cut(s) 184
Bsh1236I CGCG 1 cut(s) 585
BshFI GGCC 2 cut(s) 364, 928
BsiHKAI GWGCWC 5 cut(s) 134, 171, 777, 891, 1290
BsiSI CCGG 3 cut(s) 407, 610, 884
BslFI GGGAC 1 cut(s) 1352
BslI CCNNNNNNNGG 3 cut(s) 648, 890, 949
BsmAI GTCTC 2 cut(s) 333, 867
BsmBI CGTCTC 1 cut(s) 333
BsmFI GGGAC 1 cut(s) 1352
BsmI GAATGC 1 cut(s) 831
BsnI GGCC 2 cut(s) 364, 928
Bsp1286I GDGCHC 6 cut(s) 134, 171, 777, 891, 1087, 1290
Bsp13I TCCGGA 1 cut(s) 406
Bsp143I GATC 7 cut(s) 59, 85, 489, 994, 1000, 1295, 1317
Bsp1720I GCTNAGC 1 cut(s) 1362
BspACI CCGC 2 cut(s) 761, 1076
BspANI GGCC 2 cut(s) 364, 928
BspCNI CTCAG 5 cut(s) 176, 877, 1302, 1306, 1375
BspEI TCCGGA 1 cut(s) 406
BspFNI CGCG 1 cut(s) 585
BspHI TCATGA 1 cut(s) 645
BspLI GGNNCC 3 cut(s) 882, 1251, 1297
BspMAI CTGCAG 2 cut(s) 190, 400
BspOI GCTAGC 1 cut(s) 1019
BspPI GGATC 3 cut(s) 989, 1290, 1303
BspQI GCTCTTC 1 cut(s) 765
BspTI CTTAAG 1 cut(s) 764
BsrDI GCAATG 1 cut(s) 1140
BsrFI RCCGGY 1 cut(s) 883
BsrI ACTGG 1 cut(s) 1151
BssAI RCCGGY 1 cut(s) 883
BssECI CCNNGG 4 cut(s) 96, 504, 575, 1299
BssMI GATC 7 cut(s) 59, 85, 489, 994, 1000, 1295, 1317
BssT1I CCWWGG 4 cut(s) 96, 504, 575, 1299
Bst2UI CCWGG 2 cut(s) 622, 1277
Bst4CI ACNGT 2 cut(s) 1058, 1371
Bst6I CTCTTC 1 cut(s) 765
BstAFI CTTAAG 1 cut(s) 764
BstC8I GCNNGC 4 cut(s) 831, 1017, 1083, 1205
BstDEI CTNAG 5 cut(s) 163, 864, 1289, 1314, 1362
BstENI CCTNNNNNAGG 1 cut(s) 646
BstF5I GGATG 2 cut(s) 415, 471
BstFNI CGCG 1 cut(s) 585
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 7 cut(s) 62, 88, 492, 997, 1003, 1298, 1320
BstMAI GTCTC 2 cut(s) 333, 867
BstMBI GATC 7 cut(s) 59, 85, 489, 994, 1000, 1295, 1317
BstMWI GCNNNNNNNGC 3 cut(s) 1021, 1082, 1310
BstNI CCWGG 2 cut(s) 622, 1277
BstSCI CCNGG 2 cut(s) 620, 1275
BstSFI CTRYAG 2 cut(s) 186, 396
BstUI CGCG 1 cut(s) 585
BstV1I GCAGC 3 cut(s) 283, 1367, 1370
BstV2I GAAGAC 3 cut(s) 296, 423, 576
BstX2I RGATCY 1 cut(s) 1295
BstYI RGATCY 1 cut(s) 1295
BsuRI GGCC 2 cut(s) 364, 928
BtsCI GGATG 2 cut(s) 415, 471
BtsI GCAGTG 3 cut(s) 195, 196, 393
BtsIMutI CAGTG 5 cut(s) 195, 196, 219, 393, 1134
Cac8I GCNNGC 4 cut(s) 831, 1017, 1083, 1205
CciI TCATGA 1 cut(s) 645
CfoI GCGC 1 cut(s) 10
Cfr10I RCCGGY 1 cut(s) 883
Cfr13I GGNCC 1 cut(s) 1249
Csp6I GTAC 4 cut(s) 509, 520, 797, 1261
CviAII CATG 6 cut(s) 340, 424, 646, 658, 757, 1168
CviQI GTAC 4 cut(s) 509, 520, 797, 1261
DdeI CTNAG 5 cut(s) 163, 864, 1289, 1314, 1362
DpnI GATC 7 cut(s) 61, 87, 491, 996, 1002, 1297, 1319
DpnII GATC 7 cut(s) 59, 85, 489, 994, 1000, 1295, 1317
DriI GACNNNNNGTC 1 cut(s) 424
Eam1104I CTCTTC 1 cut(s) 765
Eam1105I GACNNNNNGTC 1 cut(s) 424
EarI CTCTTC 1 cut(s) 765
Ecl136II GAGCTC 2 cut(s) 132, 1288
Eco130I CCWWGG 4 cut(s) 96, 504, 575, 1299
Eco147I AGGCCT 1 cut(s) 364
Eco24I GRGCYC 3 cut(s) 134, 1087, 1290
Eco32I GATATC 2 cut(s) 345, 1125
Eco47I GGWCC 1 cut(s) 1249
Eco53kI GAGCTC 2 cut(s) 132, 1288
Eco57I CTGAAG 2 cut(s) 440, 938
EcoICRI GAGCTC 2 cut(s) 132, 1288
EcoNI CCTNNNNNAGG 1 cut(s) 646
EcoRII CCWGG 2 cut(s) 620, 1275
EcoRV GATATC 2 cut(s) 345, 1125
EcoT14I CCWWGG 4 cut(s) 96, 504, 575, 1299
EcoT38I GRGCYC 3 cut(s) 134, 1087, 1290
ErhI CCWWGG 4 cut(s) 96, 504, 575, 1299
Esp3I CGTCTC 1 cut(s) 333
FaeI CATG 6 cut(s) 343, 427, 649, 661, 760, 1171
FalI AAGNNNNNCTT 4 cut(s) 770, 802, 1221, 1253
FaqI GGGAC 1 cut(s) 1352
FatI CATG 6 cut(s) 339, 423, 645, 657, 756, 1167
FauNDI CATATG 1 cut(s) 1394
FbaI TGATCA 2 cut(s) 489, 1000
FblI GTMKAC 1 cut(s) 603
Fnu4HI GCNGC 4 cut(s) 272, 761, 1356, 1359
FokI GGATG 2 cut(s) 422, 458
FriOI GRGCYC 3 cut(s) 134, 1087, 1290
Fsp4HI GCNGC 4 cut(s) 272, 761, 1356, 1359
FspBI CTAG 4 cut(s) 39, 485, 576, 1016
FspI TGCGCA 1 cut(s) 9
GlaI GCGC 1 cut(s) 9
GluI GCNGC 4 cut(s) 272, 761, 1356, 1359
GsuI CTGGAG 1 cut(s) 1259
HaeIII GGCC 2 cut(s) 364, 928
HapII CCGG 3 cut(s) 407, 610, 884
HhaI GCGC 1 cut(s) 10
Hin1II CATG 6 cut(s) 343, 427, 649, 661, 760, 1171
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HinfI GANTC 3 cut(s) 92, 689, 913
HpaII CCGG 3 cut(s) 407, 610, 884
HphI GGTGA 3 cut(s) 27, 745, 1298
Hpy166II GTNNAC 2 cut(s) 604, 627
Hpy188I TCNGA 7 cut(s) 27, 166, 568, 694, 918, 1038, 1292
Hpy188III TCNNGA 9 cut(s) 89, 253, 407, 646, 787, 874, 985, 998, 1321
Hpy8I GTNNAC 2 cut(s) 604, 627
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 7 cut(s) 80, 226, 387, 652, 871, 940, 1157
HpyCH4III ACNGT 2 cut(s) 1058, 1371
HpyCH4IV ACGT 1 cut(s) 1224
HpyCH4V TGCA 7 cut(s) 188, 201, 271, 316, 398, 676, 829
HpyF10VI GCNNNNNNNGC 3 cut(s) 1021, 1082, 1310
HpyF3I CTNAG 5 cut(s) 163, 864, 1289, 1314, 1362
HpySE526I ACGT 1 cut(s) 1224
Hsp92II CATG 6 cut(s) 343, 427, 649, 661, 760, 1171
HspAI GCGC 1 cut(s) 8
Kpn2I TCCGGA 1 cut(s) 406
Ksp22I TGATCA 2 cut(s) 489, 1000
Kzo9I GATC 7 cut(s) 59, 85, 489, 994, 1000, 1295, 1317
LguI GCTCTTC 1 cut(s) 765
LmnI GCTCC 5 cut(s) 129, 279, 880, 1078, 1194
Lsp1109I GCAGC 3 cut(s) 283, 1367, 1370
LweI GCATC 3 cut(s) 747, 1037, 1224
MaeI CTAG 4 cut(s) 39, 485, 576, 1016
MaeII ACGT 1 cut(s) 1224
MaeIII GTNAC 5 cut(s) 14, 192, 447, 538, 931
MalI GATC 7 cut(s) 61, 87, 491, 996, 1002, 1297, 1319
MboI GATC 7 cut(s) 59, 85, 489, 994, 1000, 1295, 1317
MfeI CAATTG 2 cut(s) 845, 1211
MflI RGATCY 1 cut(s) 1295
MhlI GDGCHC 6 cut(s) 134, 171, 777, 891, 1087, 1290
MluCI AATT 7 cut(s) 301, 306, 533, 845, 937, 1211, 1333
MlyI GAGTC 1 cut(s) 698
MmeI TCCRAC 2 cut(s) 1040, 1402
MroI TCCGGA 1 cut(s) 406
MroXI GAANNNNTTC 1 cut(s) 1146
MseI TTAA 2 cut(s) 744, 765
MslI CAYNNNNRTG 1 cut(s) 338
MspCI CTTAAG 1 cut(s) 764
MspI CCGG 3 cut(s) 407, 610, 884
MspR9I CCNGG 2 cut(s) 622, 1277
MunI CAATTG 2 cut(s) 845, 1211
Mva1269I GAATGC 1 cut(s) 831
MvaI CCWGG 2 cut(s) 622, 1277
MvnI CGCG 1 cut(s) 585
MwoI GCNNNNNNNGC 3 cut(s) 1021, 1082, 1310
NdeI CATATG 1 cut(s) 1394
NdeII GATC 7 cut(s) 59, 85, 489, 994, 1000, 1295, 1317
NheI GCTAGC 1 cut(s) 1015
NlaIII CATG 6 cut(s) 343, 427, 649, 661, 760, 1171
NlaIV GGNNCC 3 cut(s) 882, 1251, 1297
NmuCI GTSAC 3 cut(s) 192, 447, 931
NsbI TGCGCA 1 cut(s) 9
PagI TCATGA 1 cut(s) 645
PceI AGGCCT 1 cut(s) 364
PciSI GCTCTTC 1 cut(s) 765
PctI GAATGC 1 cut(s) 831
PdmI GAANNNNTTC 1 cut(s) 1146
PfeI GAWTC 2 cut(s) 92, 913
PfoI TCCNGGA 1 cut(s) 1275
PkrI GCNGC 4 cut(s) 273, 762, 1357, 1360
PleI GAGTC 1 cut(s) 697
PpsI GAGTC 1 cut(s) 697
PshBI ATTAAT 1 cut(s) 744
Psp124BI GAGCTC 2 cut(s) 134, 1290
Psp6I CCWGG 2 cut(s) 620, 1275
PspGI CCWGG 2 cut(s) 620, 1275
PspN4I GGNNCC 3 cut(s) 882, 1251, 1297
PspPI GGNCC 1 cut(s) 1249
PstI CTGCAG 2 cut(s) 190, 400
PsuI RGATCY 1 cut(s) 1295
RsaI GTAC 4 cut(s) 510, 521, 798, 1262
RsaNI GTAC 4 cut(s) 509, 520, 797, 1261
RseI CAYNNNNRTG 1 cut(s) 338
SacI GAGCTC 2 cut(s) 134, 1290
SapI GCTCTTC 1 cut(s) 765
SaqAI TTAA 2 cut(s) 744, 765
SatI GCNGC 4 cut(s) 272, 761, 1356, 1359
Sau3AI GATC 7 cut(s) 59, 85, 489, 994, 1000, 1295, 1317
Sau96I GGNCC 1 cut(s) 1249
SchI GAGTC 1 cut(s) 698
ScrFI CCNGG 2 cut(s) 622, 1277
SduI GDGCHC 6 cut(s) 134, 171, 777, 891, 1087, 1290
SfaNI GCATC 3 cut(s) 747, 1037, 1224
SfcI CTRYAG 2 cut(s) 186, 396
SinI GGWCC 1 cut(s) 1249
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 4 cut(s) 251, 722, 764, 971
SmoI CTYRAG 4 cut(s) 251, 722, 764, 971
SpeI ACTAGT 1 cut(s) 484
Sse9I AATT 7 cut(s) 301, 306, 533, 845, 937, 1211, 1333
SseBI AGGCCT 1 cut(s) 364
SsiI CCGC 2 cut(s) 761, 1076
SspI AATATT 1 cut(s) 991
SspMI CTAG 4 cut(s) 39, 485, 576, 1016
SstI GAGCTC 2 cut(s) 134, 1290
StuI AGGCCT 1 cut(s) 364
StyD4I CCNGG 2 cut(s) 620, 1275
StyI CCWWGG 4 cut(s) 96, 504, 575, 1299
TaaI ACNGT 2 cut(s) 1058, 1371
TaiI ACGT 1 cut(s) 1227
TaqI TCGA 4 cut(s) 47, 984, 1265, 1284
TasI AATT 7 cut(s) 301, 306, 533, 845, 937, 1211, 1333
TatI WGTACW 2 cut(s) 519, 1260
TauI GCSGC 1 cut(s) 763
TfiI GAWTC 2 cut(s) 92, 913
Tru1I TTAA 2 cut(s) 744, 765
Tru9I TTAA 2 cut(s) 744, 765
TscAI CASTG 5 cut(s) 195, 203, 226, 400, 1134
TseFI GTSAC 3 cut(s) 192, 447, 931
TseI GCWGC 3 cut(s) 271, 1355, 1358
Tsp45I GTSAC 3 cut(s) 192, 447, 931
TspDTI ATGAA 6 cut(s) 138, 243, 429, 634, 674, 1381
TspGWI ACGGA 1 cut(s) 429
TspRI CASTG 5 cut(s) 195, 203, 226, 400, 1134
Vha464I CTTAAG 1 cut(s) 764
VpaK11BI GGWCC 1 cut(s) 1249
VspI ATTAAT 1 cut(s) 744
XagI CCTNNNNNAGG 1 cut(s) 646
XapI RAATTY 1 cut(s) 301
XmaJI CCTAGG 1 cut(s) 575
XmiI GTMKAC 1 cut(s) 603
XmnI GAANNNNTTC 1 cut(s) 1146
XspI CTAG 4 cut(s) 39, 485, 576, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.