Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003022

Physical Location & Seq

Genomic Coordinates Forward (+)

16558681 .. 16564555

Gene Structure 5875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0120500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3015 bp

ATGGAAGAAAAACGTGGAGACGCCGGAACTCAGCCTCCGGCTAATGCCGACTCTCCGGCCGCCGAGCCTACTTCTTCGAGACGCCGCGCCGGAGGCCAAAAGCGAAAGGCCAGCAGCCTCGGCGGCTCGGGCTCTTCATCGACACCGTCGAAACGCTTGACTCGCGAGAAGGCTTCGCTTTCTCACCCTCCGATCCACAACGGCCCGTTGACGAGGGCCCGCCAGGGGCCCAATAACCATGCGTCGGCCTCAGCCGCGGCCGTGAAGCCTGCTGCTCAGACGAAGCGGCCGGAGCCGTCGTCGGTGGAGGCGGAGCGGGCTAAAAGGGAGAGCGAGTTGGAGGCTTTGGAGGCTTCTATGGAAGCTGAGTTTGAAGCCATTAGATCTCGCGATGCCAATGCTCATGTGGTTCCCAGTCATTGTGGTTGGTTTTCATGGACAAAGATTCACGCCATTGAGAAGCGTATGTTGCCGTCTTTCTTTAATGGGAAGTCTGATACTCGAACTCCCGATACATACCTGGAGATACGCAATTGTATTATGAAAAAATTCCATGCGAATCCAGGAACATTGGTTGAACTGAAGGATATGTTGGAGCTTGAAGTGGGAGACTTCGATTCAAGACAAGAAGTAATGGAATTTTTGGACCACTGGGGTTTGATAAATTTCCACCCTTTCCCACCAACAGGTTCTACTGTTGCGAATGTCAACAGTGATGAGGTGACAGAAAGGGATTCTTTGGTAGATAAGTTGTATCACTTTGAAGCACTAGAATCACGATCATCAGTGGTTCCTAAGACTAACTTATTTACTCCAACTGTGCCATCTGGTCTGTTCCCAGAGTCTACATTTGCTGAAGAATTGGTGAGGCCTGAGGGGCCAGCTGTTGAGTACCATTGCAACTCTTGTTCAGCTGATTGCTCACGCAAACGCTACCATTGCCAGAAGCAGGCAGATTTTGATCTGTGTTCTGATTGCTTTAACAACGGGAAATTCGACTCGGGTATGTCTTCATCAGATTTTATTCTTATGGAGCCTGCTGAGGCTCCTGGGGTAAGTGGTGGGAAGTGGACAGATCAGGAGACCCTCCTTCTCCTTGAAGCATTAGAATTATATAAAGAAAACTGGAATGAGATTGCTGAACATGTTGCAACAAAAACAAAAGCTCAGTGTATATTGCACTTTGTTCAAATGCCAATCGAGGATACCTTCCTAGATCATGATGATGATATTGATGCCAGTGCCAAAGAAACTGCAGATCCAACTTCAACTAACAATGATTTATTGCCCCCCAAAGATGCTCCTGAAACAACAGAGAATAAGACAAGTGCTAATGACAGTGACCCTCAAACTTCCCCGATGGAAATTTCAAAAGAAGAAGCAAGTGAGGTTAAAGTTGGGGAGGATACTTCAAAGCCAGAAGATGAAAATGAAGTCAAAGTTGGTCAGGACACCTCGAAGTTGGAAGATACTGGTGATTTGAAAATTGATCAGGAAACAGATGAGAACCTTGCATTGAAGGCTCTTAAAGAAGCCTTTGAAGTTGTTGGTTATCCTCAAACACCTGAAAGTCAACTCTCATTTGCAGATGTGGGAAACCCTGCCATGGCATTGGCAGCATTCCTGGCACGGGTGGTGGGACCGGATCATGCCATTGCCTCAGCACATAATTCTTTGAAATCCATATCTGCAGATTCTCCTGGCATTGAGCTGGCTTCGAGGCACTGCTTTATTTTGGAAGATCCACCAAATGACAGAAAGGAACAAGCTAGTTGTGATAGTGTTGCTGCTGAAAGGGAAGTGCAGAGTGAGAAAGTCGATGAAGAAAATAGTCATAAAGAGGATAACTCCACCTCAGGTTTGGAAGATAGAGGTGTATCAAATGATAACAACGACAAGAAACTTGAAGAAGTTACTCCTGAAGAAAAGTCACAATCTACAAAAGAACAAGATGACAGGGTTTCTCATGAGGAAGTAGGAACTGATAAAGTGAACAAGTCAAACAACTCAGAGTTACCAAATGACCAACCACCAACTTTGGGGGAGTCAGATAATTCAAAAGTTGAGACACCACCAAGTTCAGTAAAGGAGTCGGGAGAGGGAACTTCAGTAGGACAGCCTTCTGAAACCATAGAGACACCAATGGATGTGGATATGTCTGACTCCAATCCCTCAACGAAGACGGAGCCTCAGCAACCAGTTACATCAAATTCAGCTGAGGAACCTTCTCAGTCTACAGAGGCATCAAAAGAAGTGGATGTATCTAATGCTCTGCCTTCAGAAAGAGATCAGACTCCACCACCAGTTACTGGAAAATCAGAAGTACCCCCTCAACCTACAGAAACATCAAAGGATGTTCTTATGGTGTGTGACTCTCAGCCCCCACAAGAGAATGAGCCTTCCCAACCAGTTGAAAACACTGCAAGTGAGGATCAGACTGATGATAGTAAACACGAGAAGCATGACTGTACAGACCCAAAAAATGATAAAAAGCAAGAGACAAAAGGCGAACAGAAAATTGATAAAATAAAGCAAGCTGCAGTTTCTGCAGTCTCAGCAGCTGCTGTGAAGGCAAAACTTCTAGCAGAACAGGAAGAAGATCAAATTCGACAGCTTGCAGCAATGTTGATAGAGAAGCAGTTGCATAAGTTGGAAGCCAAGTTAGGTTTCTTTCATGAGATGGAAAGTGCTGTGATGAGGGTAAAAGAGCAATTGGATAGGTCAAGACAGAAGCTCTACCATGAGCGGGCACAGATAATTGCTGCCCGACTTGGCTTACCAGGTTCCTCATCTAGAGGAATGCCATCTGCGATGCCTACCAATAGAATGGCCACGAATGCTGCAAACTCAGTTCCAAGGCCCCCACTTATGATGACCTCTCAAAGGCCACCCATGTCGAGACCCACGGGGGCGGTGGCTTCGACCCCTTTAAACCAATTTTCGTCCTCAACTTTGTCAGGAAGTGCGATTCGGCCTCCCAGTCAGGACAGCCTTTCTTCTATTGGGACAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0008287 GO:0019220 GO:0019222 GO:0031323 GO:0032991 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051174 GO:0065007 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

B56

Protein Analysis

1004

Amino Acids

109.47

Weight (kDa)

4.82

Isoelectric Point (pI)

53.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SWIRM	PF04433	145 - 223	7.1e-22	SWIRM domain
ZZ	PF00569	297 - 332	1.2e-08	Zinc finger, ZZ type
Myb_DNA-binding	PF00249	355 - 397	4.5e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	357 - 397	1.3e-06	Myb-like DNA-binding domain
SWIRM-assoc_1	PF16495	849 - 924	2.3e-23	SWIRM-associated region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38490
fragaria_vesca	FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660
malus_domestica	MD10G1127900.v1.1 MD10G1128000.v1.1
prunus_persica	Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1
pyrus_communis	pycom10g10960
rosa_chinensis	RchiOBHm_Chr6g0278901 RchiOBHm_Chr6g0278921 RchiOBHm_Chr6g0278961
rosa_multiflora	Rmu_sc0000309.1_g000056 Rmu_sc0009618.1_g000001 Rmu_sc0009618.1_g000014
rosa_roxburghii	Rroxscaffold_7G00189310 Rroxscaffold_7G00189390 Rroxscaffold_7G00189530
rosa_rugosa	Rorug06G0120200 Rorug06G0120400 Rorug06G0120500 Rorug06G0120500
rosa_samantha	Rh6AG229100 Rh6BG234300 Rh6CG236500 Rh6DG227800 Rh6DG228100
rosa_wichuraiana	Rw6G020050 Rw6G020060 Rw6G020170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	2309
AccBSI	CCGCTC	2 cut(s)	316, 2746
AccI	GTMKAC	2 cut(s)	845, 2234
AccII	CGCG	4 cut(s)	87, 165, 257, 390
AclWI	GGATC	5 cut(s)	187, 1253, 1653, 1736, 2439
AcoI	YGGCCR	4 cut(s)	57, 258, 287, 2829
AcsI	RAATTY	7 cut(s)	548, 638, 664, 992, 1365, 2209, 2604
AcuI	CTGAAG	5 cut(s)	602, 876, 1941, 2091, 2262
AcyI	GRCGYC	2 cut(s)	21, 82
AfaI	GTAC	3 cut(s)	893, 2325, 2470
AflIII	ACRYGT	1 cut(s)	1144
AjnI	CCWGG	7 cut(s)	222, 519, 562, 1048, 1623, 1699, 2779
AjuI	GAANNNNNNNTTGG	6 cut(s)	575, 607, 1425, 1457, 2651, 2683
AloI	GAACNNNNNNTCC	2 cut(s)	19, 51
Alw26I	GTCTC	9 cut(s)	12, 73, 603, 1076, 2060, 2129, 2492, 2557, 2893
AlwI	GGATC	5 cut(s)	187, 1253, 1653, 1736, 2439
AlwNI	CAGNNNCTG	4 cut(s)	2309, 2546, 2561, 2564
Ama87I	CYCGRG	2 cut(s)	127, 1000
ApaI	GGGCCC	2 cut(s)	220, 231
ApoI	RAATTY	7 cut(s)	548, 638, 664, 992, 1365, 2209, 2604
Asp700I	GAANNNNTTC	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	9 cut(s)	203, 216, 217, 227, 228, 646, 878, 1640, 2859
AsuHPI	GGTGA	4 cut(s)	176, 733, 877, 1487
AvaI	CYCGRG	2 cut(s)	127, 1000
AvaII	GGWCC	2 cut(s)	646, 1640
AxyI	CCTNAGG	2 cut(s)	873, 1855
BaeGI	GKGCMC	3 cut(s)	220, 231, 2752
BalI	TGGCCA	1 cut(s)	2831
BanII	GRGCYC	3 cut(s)	134, 220, 231
BauI	CACGAG	1 cut(s)	2453
BbsI	GAAGAC	2 cut(s)	1002, 2186
BbvCI	CCTCAGC	5 cut(s)	250, 1041, 1660, 2190, 2217
BccI	CCATC	4 cut(s)	832, 1354, 2674, 2812
BceAI	ACGGC	4 cut(s)	217, 245, 280, 457
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciT130I	CCWGG	7 cut(s)	224, 521, 564, 1050, 1625, 1701, 2781
BciVI	GTATCC	2 cut(s)	1198, 1399
BclI	TGATCA	1 cut(s)	1489
BcoDI	GTCTC	9 cut(s)	12, 73, 603, 1076, 2060, 2129, 2492, 2557, 2893
BfaI	CTAG	5 cut(s)	770, 1214, 1770, 2582, 2793
BfmI	CTRYAG	6 cut(s)	1254, 1689, 2235, 2337, 2538, 2547
BfuI	GTATCC	2 cut(s)	1198, 1399
BglI	GCCNNNNNGGC	2 cut(s)	123, 877
BglII	AGATCT	1 cut(s)	383
Bme1390I	CCNGG	7 cut(s)	224, 521, 564, 1050, 1625, 1701, 2781
Bme18I	GGWCC	2 cut(s)	646, 1640
BmeT110I	CYCGRG	2 cut(s)	127, 1000
BmgT120I	GGNCC	9 cut(s)	203, 216, 217, 227, 228, 646, 878, 1640, 2859
BmrFI	CCNGG	7 cut(s)	224, 521, 564, 1050, 1625, 1701, 2781
BmrI	ACTGGG	3 cut(s)	408, 661, 2973
BmsI	GCATC	5 cut(s)	382, 1225, 1288, 2252, 2802
BmuI	ACTGGG	3 cut(s)	408, 661, 2973
BpiI	GAAGAC	2 cut(s)	1002, 2186
BplI	GAGNNNNNCTC	2 cut(s)	1832, 1864
BpmI	CTGGAG	1 cut(s)	542
Bpu10I	CCTNAGC	5 cut(s)	250, 1041, 1660, 2190, 2217
BsaBI	GATNNNNATC	1 cut(s)	960
BsaHI	GRCGYC	2 cut(s)	21, 82
BsaI	GGTCTC	2 cut(s)	1076, 2893
BsaJI	CCNNGG	7 cut(s)	118, 223, 255, 1049, 1605, 2855, 2904
BsaWI	WCCGGW	1 cut(s)	1642
BsaXI	ACNNNNNCTCC	8 cut(s)	19, 49, 284, 314, 320, 350, 490, 520
Bse21I	CCTNAGG	2 cut(s)	873, 1855
Bse3DI	GCAATG	4 cut(s)	895, 937, 1653, 2628
Bse8I	GATNNNNATC	1 cut(s)	960
BseBI	CCWGG	7 cut(s)	224, 521, 564, 1050, 1625, 1701, 2781
BseDI	CCNNGG	7 cut(s)	118, 223, 255, 1049, 1605, 2855, 2904
BseGI	GGATG	3 cut(s)	2152, 2263, 2359
BseJI	GATNNNNATC	1 cut(s)	960
BseMI	GCAATG	4 cut(s)	895, 937, 1653, 2628
BseSI	GKGCMC	3 cut(s)	220, 231, 2752
BseX3I	CGGCCG	3 cut(s)	57, 258, 287
BsgI	GTGCAG	1 cut(s)	1823
Bsh1236I	CGCG	4 cut(s)	87, 165, 257, 390
Bsh1285I	CGRYCG	3 cut(s)	60, 261, 290
BsiEI	CGRYCG	3 cut(s)	60, 261, 290
BsiHKCI	CYCGRG	2 cut(s)	127, 1000
BsiSI	CCGG	6 cut(s)	24, 38, 56, 90, 290, 1643
BslFI	GGGAC	1 cut(s)	1653
BsmAI	GTCTC	9 cut(s)	12, 73, 603, 1076, 2060, 2129, 2492, 2557, 2893
BsmBI	CGTCTC	2 cut(s)	12, 73
BsmFI	GGGAC	1 cut(s)	1653
BsmI	GAATGC	3 cut(s)	1619, 2805, 2842
Bso31I	GGTCTC	2 cut(s)	1076, 2893
BsoBI	CYCGRG	2 cut(s)	127, 1000
Bsp120I	GGGCCC	2 cut(s)	216, 227
Bsp1286I	GDGCHC	4 cut(s)	134, 220, 231, 2752
Bsp1407I	TGTACA	1 cut(s)	2468
Bsp19I	CCATGG	1 cut(s)	1605
Bsp68I	TCGCGA	2 cut(s)	165, 390
BspFNI	CGCG	4 cut(s)	87, 165, 257, 390
BspHI	TCATGA	3 cut(s)	1219, 1966, 2674
BspMAI	CTGCAG	4 cut(s)	1258, 1693, 2542, 2551
BspPI	GGATC	5 cut(s)	187, 1253, 1653, 1736, 2439
BspQI	GCTCTTC	1 cut(s)	139
BspTNI	GGTCTC	2 cut(s)	1076, 2893
BsrBI	CCGCTC	2 cut(s)	316, 2746
BsrDI	GCAATG	4 cut(s)	895, 937, 1653, 2628
BsrGI	TGTACA	1 cut(s)	2468
BssECI	CCNNGG	7 cut(s)	118, 223, 255, 1049, 1605, 2855, 2904
BssNI	GRCGYC	2 cut(s)	21, 82
BssSI	CACGAG	1 cut(s)	2453
BssT1I	CCWWGG	2 cut(s)	1605, 2855
Bst2BI	CACGAG	1 cut(s)	2453
Bst2UI	CCWGG	7 cut(s)	224, 521, 564, 1050, 1625, 1701, 2781
Bst4CI	ACNGT	6 cut(s)	147, 697, 713, 820, 1340, 2468
Bst6I	CTCTTC	1 cut(s)	139
BstACI	GRCGYC	2 cut(s)	21, 82
BstAPI	GCANNNNNTGC	1 cut(s)	2546
BstAUI	TGTACA	1 cut(s)	2468
BstDSI	CCRYGG	3 cut(s)	255, 1605, 2904
BstENI	CCTNNNNNAGG	1 cut(s)	2881
BstF5I	GGATG	3 cut(s)	2152, 2263, 2359
BstFNI	CGCG	4 cut(s)	87, 165, 257, 390
BstHHI	GCGC	1 cut(s)	89
BstMAI	GTCTC	9 cut(s)	12, 73, 603, 1076, 2060, 2129, 2492, 2557, 2893
BstMCI	CGRYCG	3 cut(s)	60, 261, 290
BstNI	CCWGG	7 cut(s)	224, 521, 564, 1050, 1625, 1701, 2781
BstNSI	RCATGY	1 cut(s)	1148
BstSCI	CCNGG	7 cut(s)	222, 519, 562, 1048, 1623, 1699, 2779
BstSFI	CTRYAG	6 cut(s)	1254, 1689, 2235, 2337, 2538, 2547
BstSLI	GKGCMC	3 cut(s)	220, 231, 2752
BstUI	CGCG	4 cut(s)	87, 165, 257, 390
BstV2I	GAAGAC	2 cut(s)	1002, 2186
BstX2I	RGATCY	3 cut(s)	383, 1258, 1741
BstXI	CCANNNNNNTGG	2 cut(s)	1612, 2827
BstYI	RGATCY	3 cut(s)	383, 1258, 1741
BstZI	CGGCCG	3 cut(s)	57, 258, 287
Bsu36I	CCTNAGG	2 cut(s)	873, 1855
BsuI	GTATCC	2 cut(s)	1198, 1399
BtgI	CCRYGG	3 cut(s)	255, 1605, 2904
BtgZI	GCGATG	2 cut(s)	405, 2825
BtsCI	GGATG	3 cut(s)	2152, 2263, 2359
BtsI	GCAGTG	2 cut(s)	1723, 2418
BtsIMutI	CAGTG	8 cut(s)	649, 718, 792, 1175, 1246, 1345, 1723, 2418
BtuMI	TCGCGA	2 cut(s)	165, 390
CaiI	CAGNNNCTG	4 cut(s)	2309, 2546, 2561, 2564
CciI	TCATGA	3 cut(s)	1219, 1966, 2674
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	9 cut(s)	203, 216, 217, 227, 228, 646, 878, 1640, 2859
Cfr42I	CCGCGG	1 cut(s)	258
CseI	GACGC	3 cut(s)	29, 90, 231
CsiI	ACCWGGT	1 cut(s)	2779
Csp6I	GTAC	3 cut(s)	892, 2324, 2469
CspCI	CAANNNNNGTGG	6 cut(s)	2019, 2054, 2130, 2165, 2235, 2270
CviQI	GTAC	3 cut(s)	892, 2324, 2469
DraI	TTTAAA	1 cut(s)	2931
EaeI	YGGCCR	4 cut(s)	57, 258, 287, 2829
EagI	CGGCCG	3 cut(s)	57, 258, 287
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
EciI	GGCGGA	1 cut(s)	326
EclXI	CGGCCG	3 cut(s)	57, 258, 287
Eco130I	CCWWGG	2 cut(s)	1605, 2855
Eco147I	AGGCCT	1 cut(s)	871
Eco24I	GRGCYC	3 cut(s)	134, 220, 231
Eco31I	GGTCTC	2 cut(s)	1076, 2893
Eco47I	GGWCC	2 cut(s)	646, 1640
Eco52I	CGGCCG	3 cut(s)	57, 258, 287
Eco57I	CTGAAG	5 cut(s)	602, 876, 1941, 2091, 2262
Eco81I	CCTNAGG	2 cut(s)	873, 1855
Eco88I	CYCGRG	2 cut(s)	127, 1000
EcoNI	CCTNNNNNAGG	1 cut(s)	2881
EcoO109I	RGGNCCY	3 cut(s)	216, 227, 2859
EcoRII	CCWGG	7 cut(s)	222, 519, 562, 1048, 1623, 1699, 2779
EcoT14I	CCWWGG	2 cut(s)	1605, 2855
EcoT38I	GRGCYC	3 cut(s)	134, 220, 231
ErhI	CCWWGG	2 cut(s)	1605, 2855
Esp3I	CGTCTC	2 cut(s)	12, 73
FalI	AAGNNNNNCTT	4 cut(s)	721, 753, 788, 820
FaqI	GGGAC	1 cut(s)	1653
FauI	CCCGC	3 cut(s)	227, 309, 2739
FbaI	TGATCA	1 cut(s)	1489
FblI	GTMKAC	2 cut(s)	845, 2234
FokI	GGATG	3 cut(s)	2159, 2270, 2366
FriOI	GRGCYC	3 cut(s)	134, 220, 231
FspBI	CTAG	5 cut(s)	770, 1214, 1770, 2582, 2793
GlaI	GCGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	542
HapII	CCGG	6 cut(s)	24, 38, 56, 90, 290, 1643
HgaI	GACGC	3 cut(s)	29, 90, 231
HhaI	GCGC	1 cut(s)	89
Hin1I	GRCGYC	2 cut(s)	21, 82
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HincII	GTYRAC	3 cut(s)	210, 709, 1574
HindII	GTYRAC	3 cut(s)	210, 709, 1574
HpaII	CCGG	6 cut(s)	24, 38, 56, 90, 290, 1643
HphI	GGTGA	4 cut(s)	176, 733, 877, 1487
Hpy166II	GTNNAC	8 cut(s)	210, 709, 846, 1071, 1574, 1993, 2235, 2450
Hpy8I	GTNNAC	8 cut(s)	210, 709, 846, 1071, 1574, 1993, 2235, 2450
Hpy99I	CGWCG	4 cut(s)	151, 247, 301, 304
HpyCH4III	ACNGT	6 cut(s)	147, 697, 713, 820, 1340, 2468
HpyCH4IV	ACGT	1 cut(s)	13
HpySE526I	ACGT	1 cut(s)	13
Hsp92I	GRCGYC	2 cut(s)	21, 82
HspAI	GCGC	1 cut(s)	87
Ksp22I	TGATCA	1 cut(s)	1489
KspI	CCGCGG	1 cut(s)	258
LguI	GCTCTTC	1 cut(s)	139
LmnI	GCTCC	7 cut(s)	292, 313, 595, 1033, 1051, 1306, 2185
LweI	GCATC	5 cut(s)	382, 1225, 1288, 2252, 2802
MabI	ACCWGGT	1 cut(s)	2779
MaeI	CTAG	5 cut(s)	770, 1214, 1770, 2582, 2793
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	8 cut(s)	721, 1340, 1912, 1929, 2013, 2200, 2305, 2369
MbiI	CCGCTC	2 cut(s)	316, 2746
MfeI	CAATTG	2 cut(s)	532, 2711
MflI	RGATCY	3 cut(s)	383, 1258, 1741
MhlI	GDGCHC	4 cut(s)	134, 220, 231, 2752
MlsI	TGGCCA	1 cut(s)	2831
MluNI	TGGCCA	1 cut(s)	2831
MlyI	GAGTC	9 cut(s)	44, 154, 851, 992, 2054, 2099, 2156, 2287, 2366
MmeI	TCCRAC	6 cut(s)	318, 573, 839, 1286, 1443, 2631
Mox20I	TGGCCA	1 cut(s)	2831
MroXI	GAANNNNTTC	1 cut(s)	548
MscI	TGGCCA	1 cut(s)	2831
MseI	TTAA	5 cut(s)	483, 981, 1392, 1527, 2930
MslI	CAYNNNNRTG	1 cut(s)	1224
Msp20I	TGGCCA	1 cut(s)	2831
MspA1I	CMGCKG	5 cut(s)	257, 884, 914, 2216, 2561
MspI	CCGG	6 cut(s)	24, 38, 56, 90, 290, 1643
MspR9I	CCNGG	7 cut(s)	224, 521, 564, 1050, 1625, 1701, 2781
MunI	CAATTG	2 cut(s)	532, 2711
Mva1269I	GAATGC	3 cut(s)	1619, 2805, 2842
MvaI	CCWGG	7 cut(s)	224, 521, 564, 1050, 1625, 1701, 2781
MvnI	CGCG	4 cut(s)	87, 165, 257, 390
NcoI	CCATGG	1 cut(s)	1605
NmeAIII	GCCGAG	2 cut(s)	88, 99
NmuCI	GTSAC	4 cut(s)	721, 1340, 1929, 2369
NruI	TCGCGA	2 cut(s)	165, 390
NspI	RCATGY	1 cut(s)	1148
PagI	TCATGA	3 cut(s)	1219, 1966, 2674
PceI	AGGCCT	1 cut(s)	871
PciI	ACATGT	1 cut(s)	1144
PciSI	GCTCTTC	1 cut(s)	139
PcsI	WCGNNNNNNNCGW	2 cut(s)	146, 993
PctI	GAATGC	3 cut(s)	1619, 2805, 2842
PdmI	GAANNNNTTC	1 cut(s)	548
PfeI	GAWTC	7 cut(s)	445, 559, 617, 734, 773, 1694, 2968
PflFI	GACNNNGTC	1 cut(s)	145
PflMI	CCANNNNNTGG	1 cut(s)	2309
PfoI	TCCNGGA	1 cut(s)	562
PleI	GAGTC	9 cut(s)	44, 154, 850, 992, 2053, 2098, 2156, 2287, 2366
PpsI	GAGTC	9 cut(s)	44, 154, 850, 992, 2053, 2098, 2156, 2287, 2366
PscI	ACATGT	1 cut(s)	1144
Psp6I	CCWGG	7 cut(s)	222, 519, 562, 1048, 1623, 1699, 2779
PspGI	CCWGG	7 cut(s)	222, 519, 562, 1048, 1623, 1699, 2779
PspOMI	GGGCCC	2 cut(s)	216, 227
PspPI	GGNCC	9 cut(s)	203, 216, 217, 227, 228, 646, 878, 1640, 2859
PsrI	GAACNNNNNNTAC	2 cut(s)	496, 528
PstI	CTGCAG	4 cut(s)	1258, 1693, 2542, 2551
PstNI	CAGNNNCTG	4 cut(s)	2309, 2546, 2561, 2564
PsuI	RGATCY	3 cut(s)	383, 1258, 1741
PsyI	GACNNNGTC	1 cut(s)	145
PvuII	CAGCTG	4 cut(s)	884, 914, 2216, 2561
RruI	TCGCGA	2 cut(s)	165, 390
RsaI	GTAC	3 cut(s)	893, 2325, 2470
RsaNI	GTAC	3 cut(s)	892, 2324, 2469
RseI	CAYNNNNRTG	1 cut(s)	1224
SacII	CCGCGG	1 cut(s)	258
SapI	GCTCTTC	1 cut(s)	139
SaqAI	TTAA	5 cut(s)	483, 981, 1392, 1527, 2930
Sau96I	GGNCC	9 cut(s)	203, 216, 217, 227, 228, 646, 878, 1640, 2859
SchI	GAGTC	9 cut(s)	44, 154, 851, 992, 2054, 2099, 2156, 2287, 2366
ScrFI	CCNGG	7 cut(s)	224, 521, 564, 1050, 1625, 1701, 2781
SduI	GDGCHC	4 cut(s)	134, 220, 231, 2752
SexAI	ACCWGGT	1 cut(s)	2779
SfaNI	GCATC	5 cut(s)	382, 1225, 1288, 2252, 2802
SfcI	CTRYAG	6 cut(s)	1254, 1689, 2235, 2337, 2538, 2547
SfiI	GGCCNNNNNGGCC	1 cut(s)	877
Sfr303I	CCGCGG	1 cut(s)	258
SgrBI	CCGCGG	1 cut(s)	258
SinI	GGWCC	2 cut(s)	646, 1640
SmiMI	CAYNNNNRTG	1 cut(s)	1224
SseBI	AGGCCT	1 cut(s)	871
SspMI	CTAG	5 cut(s)	770, 1214, 1770, 2582, 2793
StuI	AGGCCT	1 cut(s)	871
StyD4I	CCNGG	7 cut(s)	222, 519, 562, 1048, 1623, 1699, 2779
StyI	CCWWGG	2 cut(s)	1605, 2855
TaaI	ACNGT	6 cut(s)	147, 697, 713, 820, 1340, 2468
TaiI	ACGT	1 cut(s)	16
TatI	WGTACW	1 cut(s)	2468
TauI	GCSGC	6 cut(s)	62, 87, 126, 257, 260, 289
TfiI	GAWTC	7 cut(s)	445, 559, 617, 734, 773, 1694, 2968
Tru1I	TTAA	5 cut(s)	483, 981, 1392, 1527, 2930
Tru9I	TTAA	5 cut(s)	483, 981, 1392, 1527, 2930
TscAI	CASTG	8 cut(s)	656, 718, 792, 1175, 1246, 1345, 1730, 2425
TseFI	GTSAC	4 cut(s)	721, 1340, 1929, 2369
Tsp45I	GTSAC	4 cut(s)	721, 1340, 1929, 2369
TspDTI	ATGAA	8 cut(s)	126, 423, 557, 1002, 1440, 1446, 1836, 2663
TspGWI	ACGGA	1 cut(s)	2198
TspRI	CASTG	8 cut(s)	656, 718, 792, 1175, 1246, 1345, 1730, 2425
Tth111I	GACNNNGTC	1 cut(s)	145
Van91I	CCANNNNNTGG	1 cut(s)	2309
VpaK11BI	GGWCC	2 cut(s)	646, 1640
XagI	CCTNNNNNAGG	1 cut(s)	2881
XapI	RAATTY	7 cut(s)	548, 638, 664, 992, 1365, 2209, 2604
XbaI	TCTAGA	1 cut(s)	2792
XceI	RCATGY	1 cut(s)	1148
XcmI	CCANNNNNNNNNTGG	3 cut(s)	403, 1858, 2911
XmiI	GTMKAC	2 cut(s)	845, 2234
XmnI	GAANNNNTTC	1 cut(s)	548
XspI	CTAG	5 cut(s)	770, 1214, 1770, 2582, 2793

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.