Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003022

Physical Location & Seq

Genomic Coordinates Reverse (-)

42155633 .. 42158140

Gene Structure 2508 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25022

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCGGCTGTTTCGCAGTCCGTGGCAACCTGTTCAGGTTTGTACCATTTGTCTTGCAAATGCGTGCCTATTCATGAGGCTTGTTACTGCAGACTCGTAGGGCAGGGATTAGATGTTTTGGCTGTACGTCGGGTTGGCACCACATATGCTGCGTCTGTGGGAAAGGATTATCATCAATTGAGTGTTGATGATGGAGTACCTCAGGAGCCCTTCCTTCTAAGTCTTTTCAAAGAAACAGTGTGGTCTTTCAGATCATTATTCATTTTTCTGCTTGAGCAGCCGAGTCAGCTGAAGTACATTGAATGGCCAGGTTTCCGTAGCACGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SecE

Protein Analysis

109

Amino Acids

12.19

Weight (kDa)

6.27

Isoelectric Point (pI)

56.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38490
fragaria_vesca	FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660
malus_domestica	MD10G1127900.v1.1 MD10G1128000.v1.1
prunus_persica	Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1
pyrus_communis	pycom10g10960
rosa_chinensis	RchiOBHm_Chr6g0278901 RchiOBHm_Chr6g0278921 RchiOBHm_Chr6g0278961
rosa_multiflora	Rmu_sc0000309.1_g000056 Rmu_sc0009618.1_g000001 Rmu_sc0009618.1_g000014
rosa_roxburghii	Rroxscaffold_7G00189310 Rroxscaffold_7G00189390 Rroxscaffold_7G00189530
rosa_rugosa	Rorug06G0120200 Rorug06G0120400 Rorug06G0120500 Rorug06G0120500
rosa_samantha	Rh6AG229100 Rh6BG234300 Rh6CG236500 Rh6DG227800 Rh6DG228100
rosa_wichuraiana	Rw6G020050 Rw6G020060 Rw6G020170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AciI	CCGC	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	305
AcuI	CTGAAG	1 cut(s)	311
AfaI	GTAC	4 cut(s)	44, 126, 198, 296
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	2 cut(s)	229, 302
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
AoxI	GGCC	1 cut(s)	305
ApeKI	GCWGC	2 cut(s)	149, 277
AxyI	CCTNAGG	1 cut(s)	201
BalI	TGGCCA	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	136, 289
BccI	CCATC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	88
BisI	GCNGC	3 cut(s)	6, 150, 278
BlsI	GCNGC	3 cut(s)	7, 151, 279
Bme1390I	CCNGG	1 cut(s)	309
BmiI	GGNNCC	2 cut(s)	139, 207
BmrFI	CCNGG	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	293
BsaBI	GATNNNNATC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse21I	CCTNAGG	1 cut(s)	201
Bse8I	GATNNNNATC	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	21
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMII	CTCAG	1 cut(s)	215
BseXI	GCAGC	2 cut(s)	136, 289
BshFI	GGCC	1 cut(s)	307
BshNI	GGYRCC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	322
BsnI	GGCC	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	251
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	307
BspCNI	CTCAG	1 cut(s)	214
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	139, 207
BspMAI	CTGCAG	1 cut(s)	92
BspT107I	GGYRCC	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	2 cut(s)	201, 218
BstDSI	CCRYGG	1 cut(s)	21
BstKTI	GATC	1 cut(s)	254
BstMBI	GATC	1 cut(s)	251
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 286
BstNI	CCWGG	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	307
BstSFI	CTRYAG	1 cut(s)	88
BstV1I	GCAGC	2 cut(s)	136, 289
Bsu36I	CCTNAGG	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	307
BtgI	CCRYGG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	65
CciI	TCATGA	1 cut(s)	73
CseI	GACGC	1 cut(s)	141
Csp6I	GTAC	4 cut(s)	43, 125, 197, 295
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	7 cut(s)	8, 80, 122, 208, 280, 289, 307
CviKI_1	RGCY	7 cut(s)	8, 80, 122, 208, 280, 289, 307
CviQI	GTAC	4 cut(s)	43, 125, 197, 295
DdeI	CTNAG	2 cut(s)	201, 218
DpnI	GATC	1 cut(s)	253
DpnII	GATC	1 cut(s)	251
EaeI	YGGCCR	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	311
Eco81I	CCTNAGG	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	210
FaeI	CATG	1 cut(s)	77
FaiI	YATR	3 cut(s)	75, 145, 147
FatI	CATG	1 cut(s)	73
FauNDI	CATATG	1 cut(s)	145
Fnu4HI	GCNGC	3 cut(s)	6, 150, 278
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	3 cut(s)	6, 150, 278
GluI	GCNGC	3 cut(s)	6, 150, 278
HaeIII	GGCC	1 cut(s)	307
HgaI	GACGC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	77
HinfI	GANTC	2 cut(s)	93, 283
Hpy188I	TCNGA	1 cut(s)	251
Hpy188III	TCNNGA	2 cut(s)	74, 203
Hpy99I	CGWCG	1 cut(s)	132
HpyAV	CCTTC	2 cut(s)	220, 224
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	2 cut(s)	57, 90
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 286
HpyF3I	CTNAG	2 cut(s)	201, 218
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	251
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	6 cut(s)	21, 43, 89, 188, 294, 321
Lsp1109I	GCAGC	2 cut(s)	136, 289
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	1 cut(s)	253
MboI	GATC	1 cut(s)	251
MfeI	CAATTG	1 cut(s)	176
MhlI	GDGCHC	1 cut(s)	210
MlsI	TGGCCA	1 cut(s)	307
MluCI	AATT	1 cut(s)	176
MluNI	TGGCCA	1 cut(s)	307
MlyI	GAGTC	2 cut(s)	87, 292
MnlI	CCTC	2 cut(s)	70, 210
Mox20I	TGGCCA	1 cut(s)	307
MscI	TGGCCA	1 cut(s)	307
Msp20I	TGGCCA	1 cut(s)	307
MspA1I	CMGCKG	1 cut(s)	289
MspR9I	CCNGG	1 cut(s)	309
MunI	CAATTG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	277, 286
NdeI	CATATG	1 cut(s)	145
NdeII	GATC	1 cut(s)	251
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	2 cut(s)	139, 207
NmeAIII	GCCGAG	1 cut(s)	306
PagI	TCATGA	1 cut(s)	73
PkrI	GCNGC	3 cut(s)	7, 151, 279
PleI	GAGTC	2 cut(s)	87, 291
PpsI	GAGTC	2 cut(s)	87, 291
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	139, 207
PstI	CTGCAG	1 cut(s)	92
PvuII	CAGCTG	1 cut(s)	289
RsaI	GTAC	4 cut(s)	44, 126, 198, 296
RsaNI	GTAC	4 cut(s)	43, 125, 197, 295
SatI	GCNGC	3 cut(s)	6, 150, 278
Sau3AI	GATC	1 cut(s)	251
SchI	GAGTC	2 cut(s)	87, 292
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	210
SetI	ASST	6 cut(s)	32, 40, 130, 202, 291, 313
SfcI	CTRYAG	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	1 cut(s)	176
SsiI	CCGC	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	307
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	130
TasI	AATT	1 cut(s)	176
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	1 cut(s)	8
TscAI	CASTG	1 cut(s)	243
TseI	GCWGC	2 cut(s)	149, 277
TspDTI	ATGAA	2 cut(s)	62, 250
TspGWI	ACGGA	2 cut(s)	10, 305
TspRI	CASTG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.