RchiOBHm_Chr6g0278921

SecE/Sec61-gamma subunits of protein translocation complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003022
Physical Location & Seq
Reverse (-)
42080945 .. 42083885
2941 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25019

Sequence Viewer

Length: 648 bp
ATGTATATCGTATCAAAAAAAAAAAACAAAAAACATGTATATTGTGGAAAACCCAGCGTTTTGATAGAAACCCGCCAGGCAAACGGTGTTAGTCGTTGGCTTCATCCCTCGAAGGCTCAAAACTCTGAGCCAAAGTTTGCGCGCGCTATCCAGAGCGACCAAGTGAGCAGGATGGCGGCTGTTTCGCAGTCCGTGGCAACCTGTTCAGGTTTGATTAATCATCCAGGGCATGCTAAACTACCATTTGGACCTAACGGGACCAAGATCACTAATCACAATGCCGTTTCAGTAACATGTAGAAGGACTCGTAGGGCAGGGATTAGATGTTTGGCTGTACGTCGGGTTGGCACCACATATGCTGCATCTGTGGGAAAGGATCATCATCAATTGAGTGTTGATGATGGAGTACCTCAGGAGCCCTTCCTTCTAAGTCTTTTCAAAGAAACAGTGTGGTCTTTGAGATCATTATTCATTTTTCTGCTTGAGCAGCCAAGTCAGCTGAAGTACATTGAATGGCCAGGTTTCCGTAGCACACTGAAGACTGCAACTCTTACTCTTGTTCTTGTGGCGTTGCTCATTGTTGCACTTTCATCAACTGACTCTGCCCTCAGCTATATGTTGGCTTTGATTCTCAGGAGAAGACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SecE

Protein Analysis

215

Amino Acids

23.84

Weight (kDa)

10.42

Isoelectric Point (pI)

58.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SecE PF00584 159 - 211 9e-06 SecE/Sec61-gamma subunits of protein translocation complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 347
AccII CGCG 2 cut(s) 142, 144
AciI CCGC 2 cut(s) 73, 176
AclWI GGATC 1 cut(s) 384
AcoI YGGCCR 1 cut(s) 515
AcuI CTGAAG 2 cut(s) 521, 557
AfaI GTAC 3 cut(s) 336, 408, 506
AflIII ACRYGT 2 cut(s) 34, 293
AgsI TTSAA 2 cut(s) 439, 512
AjnI CCWGG 3 cut(s) 75, 223, 517
AluBI AGCT 2 cut(s) 499, 612
AluI AGCT 2 cut(s) 499, 612
AlwI GGATC 1 cut(s) 384
AoxI GGCC 1 cut(s) 515
ApeKI GCWGC 2 cut(s) 359, 487
AseI ATTAAT 1 cut(s) 216
AspLEI GCGC 3 cut(s) 142, 144, 146
AspS9I GGNCC 2 cut(s) 248, 258
AvaII GGWCC 2 cut(s) 248, 258
AxyI CCTNAGG 1 cut(s) 411
BalI TGGCCA 1 cut(s) 517
BanI GGYRCC 1 cut(s) 347
BanII GRGCYC 1 cut(s) 420
BbsI GAAGAC 1 cut(s) 545
BbvCI CCTCAGC 1 cut(s) 608
BbvI GCAGC 2 cut(s) 346, 499
BccI CCATC 2 cut(s) 166, 395
BceAI ACGGC 1 cut(s) 266
BciT130I CCWGG 3 cut(s) 77, 225, 519
BisI GCNGC 3 cut(s) 177, 360, 488
BlsI GCNGC 3 cut(s) 178, 361, 489
Bme1390I CCNGG 3 cut(s) 77, 225, 519
Bme18I GGWCC 2 cut(s) 248, 258
BmgT120I GGNCC 2 cut(s) 248, 258
BmiI GGNNCC 3 cut(s) 259, 349, 417
BmrFI CCNGG 3 cut(s) 77, 225, 519
BmsI GCATC 1 cut(s) 371
BpiI GAAGAC 1 cut(s) 545
Bpu10I CCTNAGC 1 cut(s) 608
BpuEI CTTGAG 1 cut(s) 503
BsaBI GATNNNNATC 1 cut(s) 381
BsaJI CCNNGG 2 cut(s) 192, 224
Bse21I CCTNAGG 1 cut(s) 411
Bse8I GATNNNNATC 1 cut(s) 381
BseBI CCWGG 3 cut(s) 77, 225, 519
BseDI CCNNGG 2 cut(s) 192, 224
BseGI GGATG 3 cut(s) 103, 177, 220
BseJI GATNNNNATC 1 cut(s) 381
BseMII CTCAG 4 cut(s) 117, 425, 622, 646
BsePI GCGCGC 2 cut(s) 140, 142
BseXI GCAGC 2 cut(s) 346, 499
BseYI CCCAGC 1 cut(s) 53
Bsh1236I CGCG 2 cut(s) 142, 144
BshFI GGCC 1 cut(s) 517
BshNI GGYRCC 1 cut(s) 347
BslFI GGGAC 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 271
BsnI GGCC 1 cut(s) 517
Bsp1286I GDGCHC 1 cut(s) 420
Bsp143I GATC 3 cut(s) 264, 376, 461
BspACI CCGC 2 cut(s) 73, 176
BspANI GGCC 1 cut(s) 517
BspCNI CTCAG 4 cut(s) 118, 424, 621, 645
BspFNI CGCG 2 cut(s) 142, 144
BspLI GGNNCC 3 cut(s) 259, 349, 417
BspPI GGATC 1 cut(s) 384
BspT107I GGYRCC 1 cut(s) 347
BssECI CCNNGG 2 cut(s) 192, 224
BssHII GCGCGC 2 cut(s) 140, 142
BssMI GATC 3 cut(s) 264, 376, 461
Bst2UI CCWGG 3 cut(s) 77, 225, 519
Bst4CI ACNGT 2 cut(s) 86, 448
BstC8I GCNNGC 3 cut(s) 142, 144, 231
BstDEI CTNAG 5 cut(s) 126, 411, 428, 608, 632
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 3 cut(s) 103, 177, 220
BstFNI CGCG 2 cut(s) 142, 144
BstHHI GCGC 3 cut(s) 142, 144, 146
BstKTI GATC 3 cut(s) 267, 379, 464
BstMBI GATC 3 cut(s) 264, 376, 461
BstMWI GCNNNNNNNGC 2 cut(s) 487, 496
BstNI CCWGG 3 cut(s) 77, 225, 519
BstNSI RCATGY 3 cut(s) 38, 233, 297
BstSCI CCNGG 3 cut(s) 75, 223, 517
BstUI CGCG 2 cut(s) 142, 144
BstV1I GCAGC 2 cut(s) 346, 499
BstV2I GAAGAC 1 cut(s) 545
Bsu36I CCTNAGG 1 cut(s) 411
BsuRI GGCC 1 cut(s) 517
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 3 cut(s) 103, 177, 220
BtsIMutI CAGTG 2 cut(s) 453, 533
Cac8I GCNNGC 3 cut(s) 142, 144, 231
CfoI GCGC 3 cut(s) 142, 144, 146
Cfr13I GGNCC 2 cut(s) 248, 258
Csp6I GTAC 3 cut(s) 335, 407, 505
CviAII CATG 3 cut(s) 35, 230, 294
CviQI GTAC 3 cut(s) 335, 407, 505
DdeI CTNAG 5 cut(s) 126, 411, 428, 608, 632
DpnI GATC 3 cut(s) 266, 378, 463
DpnII GATC 3 cut(s) 264, 376, 461
EaeI YGGCCR 1 cut(s) 515
Eco24I GRGCYC 1 cut(s) 420
Eco47I GGWCC 2 cut(s) 248, 258
Eco57I CTGAAG 2 cut(s) 521, 557
Eco81I CCTNAGG 1 cut(s) 411
EcoRII CCWGG 3 cut(s) 75, 223, 517
EcoT38I GRGCYC 1 cut(s) 420
FaeI CATG 3 cut(s) 38, 233, 297
FaqI GGGAC 1 cut(s) 271
FatI CATG 3 cut(s) 34, 229, 293
FauI CCCGC 1 cut(s) 80
FauNDI CATATG 1 cut(s) 355
Fnu4HI GCNGC 3 cut(s) 177, 360, 488
FokI GGATG 3 cut(s) 90, 184, 207
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 3 cut(s) 177, 360, 488
GlaI GCGC 3 cut(s) 141, 143, 145
GluI GCNGC 3 cut(s) 177, 360, 488
GsaI CCCAGC 1 cut(s) 57
HaeIII GGCC 1 cut(s) 517
HhaI GCGC 3 cut(s) 142, 144, 146
Hin1II CATG 3 cut(s) 38, 233, 297
Hin6I GCGC 3 cut(s) 140, 142, 144
HinP1I GCGC 3 cut(s) 140, 142, 144
HinfI GANTC 3 cut(s) 304, 599, 628
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 3 cut(s) 151, 413, 634
Hpy99I CGWCG 1 cut(s) 342
HpyAV CCTTC 4 cut(s) 106, 294, 430, 434
HpyCH4III ACNGT 2 cut(s) 86, 448
HpyCH4IV ACGT 1 cut(s) 337
HpyCH4V TGCA 3 cut(s) 362, 545, 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 487, 496
HpyF3I CTNAG 5 cut(s) 126, 411, 428, 608, 632
HpySE526I ACGT 1 cut(s) 337
Hsp92II CATG 3 cut(s) 38, 233, 297
HspAI GCGC 3 cut(s) 140, 142, 144
Kzo9I GATC 3 cut(s) 264, 376, 461
LmnI GCTCC 1 cut(s) 415
Lsp1109I GCAGC 2 cut(s) 346, 499
LweI GCATC 1 cut(s) 371
MaeII ACGT 1 cut(s) 337
MaeIII GTNAC 1 cut(s) 289
MalI GATC 3 cut(s) 266, 378, 463
MboI GATC 3 cut(s) 264, 376, 461
MboII GAAGA 1 cut(s) 550
MfeI CAATTG 1 cut(s) 386
MhlI GDGCHC 1 cut(s) 420
MlsI TGGCCA 1 cut(s) 517
MluCI AATT 1 cut(s) 386
MluNI TGGCCA 1 cut(s) 517
MlyI GAGTC 2 cut(s) 298, 593
MnlI CCTC 3 cut(s) 118, 420, 617
Mox20I TGGCCA 1 cut(s) 517
MscI TGGCCA 1 cut(s) 517
MseI TTAA 1 cut(s) 216
Msp20I TGGCCA 1 cut(s) 517
MspA1I CMGCKG 1 cut(s) 499
MspR9I CCNGG 3 cut(s) 77, 225, 519
MunI CAATTG 1 cut(s) 386
MvaI CCWGG 3 cut(s) 77, 225, 519
MvnI CGCG 2 cut(s) 142, 144
MwoI GCNNNNNNNGC 2 cut(s) 487, 496
NdeI CATATG 1 cut(s) 355
NdeII GATC 3 cut(s) 264, 376, 461
NlaIII CATG 3 cut(s) 38, 233, 297
NlaIV GGNNCC 3 cut(s) 259, 349, 417
NspI RCATGY 3 cut(s) 38, 233, 297
PaeI GCATGC 1 cut(s) 233
PauI GCGCGC 2 cut(s) 140, 142
PciI ACATGT 2 cut(s) 34, 293
PfeI GAWTC 1 cut(s) 628
PkrI GCNGC 3 cut(s) 178, 361, 489
PleI GAGTC 2 cut(s) 298, 593
PpsI GAGTC 2 cut(s) 298, 593
PscI ACATGT 2 cut(s) 34, 293
PshBI ATTAAT 1 cut(s) 216
Psp6I CCWGG 3 cut(s) 75, 223, 517
PspFI CCCAGC 1 cut(s) 53
PspGI CCWGG 3 cut(s) 75, 223, 517
PspN4I GGNNCC 3 cut(s) 259, 349, 417
PspPI GGNCC 2 cut(s) 248, 258
PteI GCGCGC 2 cut(s) 140, 142
PvuII CAGCTG 1 cut(s) 499
RsaI GTAC 3 cut(s) 336, 408, 506
RsaNI GTAC 3 cut(s) 335, 407, 505
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 3 cut(s) 177, 360, 488
Sau3AI GATC 3 cut(s) 264, 376, 461
Sau96I GGNCC 2 cut(s) 248, 258
SchI GAGTC 2 cut(s) 298, 593
ScrFI CCNGG 3 cut(s) 77, 225, 519
SduI GDGCHC 1 cut(s) 420
SetI ASST 8 cut(s) 203, 211, 253, 340, 412, 501, 523, 614
SfaNI GCATC 1 cut(s) 371
SinI GGWCC 2 cut(s) 248, 258
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
SphI GCATGC 1 cut(s) 233
Sse9I AATT 1 cut(s) 386
SsiI CCGC 2 cut(s) 73, 176
StyD4I CCNGG 3 cut(s) 75, 223, 517
TaaI ACNGT 2 cut(s) 86, 448
TaiI ACGT 1 cut(s) 340
TaqI TCGA 1 cut(s) 110
TasI AATT 1 cut(s) 386
TatI WGTACW 1 cut(s) 504
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 1 cut(s) 628
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 2 cut(s) 453, 540
TseI GCWGC 2 cut(s) 359, 487
TspDTI ATGAA 3 cut(s) 92, 460, 579
TspGWI ACGGA 2 cut(s) 181, 515
TspRI CASTG 2 cut(s) 453, 540
VpaK11BI GGWCC 2 cut(s) 248, 258
VspI ATTAAT 1 cut(s) 216
XceI RCATGY 3 cut(s) 38, 233, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.