Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003022

Physical Location & Seq

Genomic Coordinates Reverse (-)

41327405 .. 41329353

Gene Structure 1949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG229100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCGGCTGTTTCGGAGTCCGTGGCAACCTGTTCAGGTTTGATTAATCATCCAGGGCAAGCTAAACTACCATTTGGACATAACGGGACCAAGATCACTAATCACAATGCCGTTTCAGTAACATGTAGAAGGACTCGTAGGGCAGGGATTAGATGTTTGGCTGTACGTCGGGTTGGCACTACCTATGCTGTGTCTGTGGGAAATGATCATCATCAGTTGAGTGTTGATGATGGAGTACCTCAGGAGCCCTTCCTTCTAAGTCTTTTCAAAGAAACAGTGTGGTCTTTGAGATCATTATTCATTTTTCTGCTTGAGCAGCCGAGTCAGCTGAAGTATATTGAATGGCCAGGTTTCCATAGCACGATGAGGAAGTGGAGGTGGGATCTGGGTTCAAGTCCAACCTTAGACTGGGGACTTTTTTACTCAGCCCCAGTAGAGAAGATAAAGGTTGGTGGAGCCTGGGATGCCTCCACTCTTAAAGCAGATGTTTTTCCTGGTTGCAACAGGCCAGAGACATCAGTCAAGGACTTGAGACCAAAGTTGGGACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SecE

Protein Analysis

183

Amino Acids

20.31

Weight (kDa)

9.47

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38490
fragaria_vesca	FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660
malus_domestica	MD10G1127900.v1.1 MD10G1128000.v1.1
prunus_persica	Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1
pyrus_communis	pycom10g10960
rosa_chinensis	RchiOBHm_Chr6g0278901 RchiOBHm_Chr6g0278921 RchiOBHm_Chr6g0278961
rosa_multiflora	Rmu_sc0000309.1_g000056 Rmu_sc0009618.1_g000001 Rmu_sc0009618.1_g000014
rosa_roxburghii	Rroxscaffold_7G00189310 Rroxscaffold_7G00189390 Rroxscaffold_7G00189530
rosa_rugosa	Rorug06G0120200 Rorug06G0120400 Rorug06G0120500 Rorug06G0120500
rosa_samantha	Rh6AG229100 Rh6BG234300 Rh6CG236500 Rh6DG227800 Rh6DG228100
rosa_wichuraiana	Rw6G020050 Rw6G020060 Rw6G020170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	390
AcoI	YGGCCR	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	350
AfaI	GTAC	2 cut(s)	165, 237
AfiI	CCNNNNNNNGG	2 cut(s)	408, 542
AflIII	ACRYGT	1 cut(s)	122
AgsI	TTSAA	3 cut(s)	268, 341, 393
AjnI	CCWGG	4 cut(s)	52, 346, 458, 493
AluBI	AGCT	2 cut(s)	62, 328
AluI	AGCT	2 cut(s)	62, 328
Alw26I	GTCTC	2 cut(s)	506, 526
AlwI	GGATC	1 cut(s)	390
AoxI	GGCC	2 cut(s)	344, 506
ApeKI	GCWGC	1 cut(s)	316
AseI	ATTAAT	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	87
AvaII	GGWCC	1 cut(s)	87
AxyI	CCTNAGG	1 cut(s)	240
BalI	TGGCCA	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	4 cut(s)	54, 348, 460, 495
BclI	TGATCA	1 cut(s)	205
BcoDI	GTCTC	2 cut(s)	506, 526
BfmI	CTRYAG	1 cut(s)	548
BisI	GCNGC	2 cut(s)	6, 317
BlsI	GCNGC	2 cut(s)	7, 318
Bme1390I	CCNGG	4 cut(s)	54, 348, 460, 495
Bme18I	GGWCC	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	3 cut(s)	88, 246, 457
BmrFI	CCNGG	4 cut(s)	54, 348, 460, 495
BmrI	ACTGGG	2 cut(s)	418, 425
BmsI	GCATC	1 cut(s)	454
BmuI	ACTGGG	2 cut(s)	418, 425
BoxI	GACNNNNGTC	1 cut(s)	518
BpuEI	CTTGAG	2 cut(s)	332, 550
BsaBI	GATNNNNATC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	526
BsaJI	CCNNGG	3 cut(s)	21, 53, 459
Bsc4I	CCNNNNNNNGG	2 cut(s)	408, 542
Bse1I	ACTGG	2 cut(s)	413, 431
Bse21I	CCTNAGG	1 cut(s)	240
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	4 cut(s)	54, 348, 460, 495
BseDI	CCNNGG	3 cut(s)	21, 53, 459
BseGI	GGATG	2 cut(s)	49, 469
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	408, 542
BseMII	CTCAG	2 cut(s)	254, 438
BseNI	ACTGG	2 cut(s)	413, 431
BseXI	GCAGC	1 cut(s)	328
BshFI	GGCC	2 cut(s)	346, 508
BslFI	GGGAC	2 cut(s)	100, 426
BslI	CCNNNNNNNGG	2 cut(s)	408, 542
BsmAI	GTCTC	2 cut(s)	506, 526
BsmFI	GGGAC	2 cut(s)	100, 426
BsnI	GGCC	2 cut(s)	346, 508
Bso31I	GGTCTC	1 cut(s)	526
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	4 cut(s)	93, 205, 290, 382
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	346, 508
BspCNI	CTCAG	2 cut(s)	253, 437
BspLI	GGNNCC	3 cut(s)	88, 246, 457
BspPI	GGATC	1 cut(s)	390
BspTNI	GGTCTC	1 cut(s)	526
BsrI	ACTGG	2 cut(s)	413, 431
BssECI	CCNNGG	3 cut(s)	21, 53, 459
BssMI	GATC	4 cut(s)	93, 205, 290, 382
Bst2UI	CCWGG	4 cut(s)	54, 348, 460, 495
Bst4CI	ACNGT	2 cut(s)	277, 549
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	4 cut(s)	240, 257, 403, 424
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	2 cut(s)	49, 469
BstKTI	GATC	4 cut(s)	96, 208, 293, 385
BstMAI	GTCTC	2 cut(s)	506, 526
BstMBI	GATC	4 cut(s)	93, 205, 290, 382
BstMWI	GCNNNNNNNGC	3 cut(s)	316, 325, 464
BstNI	CCWGG	4 cut(s)	54, 348, 460, 495
BstNSI	RCATGY	1 cut(s)	126
BstPAI	GACNNNNGTC	1 cut(s)	518
BstSCI	CCNGG	4 cut(s)	52, 346, 458, 493
BstSFI	CTRYAG	1 cut(s)	548
BstV1I	GCAGC	1 cut(s)	328
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
Bsu36I	CCTNAGG	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	346, 508
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	49, 469
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	87
Csp6I	GTAC	2 cut(s)	164, 236
CviAII	CATG	1 cut(s)	123
CviQI	GTAC	2 cut(s)	164, 236
DdeI	CTNAG	4 cut(s)	240, 257, 403, 424
DpnI	GATC	4 cut(s)	95, 207, 292, 384
DpnII	GATC	4 cut(s)	93, 205, 290, 382
EaeI	YGGCCR	1 cut(s)	344
Eco24I	GRGCYC	1 cut(s)	249
Eco31I	GGTCTC	1 cut(s)	526
Eco47I	GGWCC	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	350
Eco81I	CCTNAGG	1 cut(s)	240
EcoRII	CCWGG	4 cut(s)	52, 346, 458, 493
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	1 cut(s)	126
FaiI	YATR	5 cut(s)	81, 124, 186, 336, 357
FaqI	GGGAC	2 cut(s)	100, 426
FatI	CATG	1 cut(s)	122
FbaI	TGATCA	1 cut(s)	205
Fnu4HI	GCNGC	2 cut(s)	6, 317
FokI	GGATG	2 cut(s)	36, 476
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	2 cut(s)	6, 317
GluI	GCNGC	2 cut(s)	6, 317
HaeIII	GGCC	2 cut(s)	346, 508
Hin1II	CATG	1 cut(s)	126
HinfI	GANTC	3 cut(s)	17, 133, 322
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	1 cut(s)	242
Hpy99I	CGWCG	1 cut(s)	171
HpyAV	CCTTC	3 cut(s)	123, 259, 263
HpyCH4III	ACNGT	2 cut(s)	277, 549
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	501
HpyF10VI	GCNNNNNNNGC	3 cut(s)	316, 325, 464
HpyF3I	CTNAG	4 cut(s)	240, 257, 403, 424
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	1 cut(s)	126
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	4 cut(s)	93, 205, 290, 382
LmnI	GCTCC	2 cut(s)	244, 455
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	1 cut(s)	454
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	4 cut(s)	95, 207, 292, 384
MboI	GATC	4 cut(s)	93, 205, 290, 382
MboII	GAAGA	1 cut(s)	451
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	249
MlsI	TGGCCA	1 cut(s)	346
MluNI	TGGCCA	1 cut(s)	346
MlyI	GAGTC	3 cut(s)	26, 127, 331
MmeI	TCCRAC	1 cut(s)	422
MnlI	CCTC	4 cut(s)	249, 360, 369, 478
Mox20I	TGGCCA	1 cut(s)	346
MscI	TGGCCA	1 cut(s)	346
MseI	TTAA	2 cut(s)	45, 477
Msp20I	TGGCCA	1 cut(s)	346
MspA1I	CMGCKG	1 cut(s)	328
MspR9I	CCNGG	4 cut(s)	54, 348, 460, 495
MvaI	CCWGG	4 cut(s)	54, 348, 460, 495
MwoI	GCNNNNNNNGC	3 cut(s)	316, 325, 464
NdeII	GATC	4 cut(s)	93, 205, 290, 382
NlaIII	CATG	1 cut(s)	126
NlaIV	GGNNCC	3 cut(s)	88, 246, 457
NmeAIII	GCCGAG	1 cut(s)	345
NspI	RCATGY	1 cut(s)	126
PciI	ACATGT	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	7, 318
PleI	GAGTC	3 cut(s)	25, 127, 330
PpsI	GAGTC	3 cut(s)	25, 127, 330
PscI	ACATGT	1 cut(s)	122
PshAI	GACNNNNGTC	1 cut(s)	518
PshBI	ATTAAT	1 cut(s)	45
Psp6I	CCWGG	4 cut(s)	52, 346, 458, 493
PspGI	CCWGG	4 cut(s)	52, 346, 458, 493
PspN4I	GGNNCC	3 cut(s)	88, 246, 457
PspPI	GGNCC	1 cut(s)	87
PsuI	RGATCY	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	328
RsaI	GTAC	2 cut(s)	165, 237
RsaNI	GTAC	2 cut(s)	164, 236
SaqAI	TTAA	2 cut(s)	45, 477
SatI	GCNGC	2 cut(s)	6, 317
Sau3AI	GATC	4 cut(s)	93, 205, 290, 382
Sau96I	GGNCC	1 cut(s)	87
SchI	GAGTC	3 cut(s)	26, 127, 331
ScrFI	CCNGG	4 cut(s)	54, 348, 460, 495
SduI	GDGCHC	1 cut(s)	249
SfaNI	GCATC	1 cut(s)	454
SfcI	CTRYAG	1 cut(s)	548
SinI	GGWCC	1 cut(s)	87
SmlI	CTYRAG	2 cut(s)	311, 529
SmoI	CTYRAG	2 cut(s)	311, 529
SsiI	CCGC	1 cut(s)	5
StyD4I	CCNGG	4 cut(s)	52, 346, 458, 493
TaaI	ACNGT	2 cut(s)	277, 549
TaiI	ACGT	1 cut(s)	169
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	2 cut(s)	45, 477
Tru9I	TTAA	2 cut(s)	45, 477
TscAI	CASTG	1 cut(s)	282
TseI	GCWGC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	289
TspGWI	ACGGA	1 cut(s)	10
TspRI	CASTG	1 cut(s)	282
VpaK11BI	GGWCC	1 cut(s)	87
VspI	ATTAAT	1 cut(s)	45
XceI	RCATGY	1 cut(s)	126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.