Rroxscaffold_7G00189310

SecE/Sec61-gamma subunits of protein translocation complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003022
Physical Location & Seq
Forward (+)
29035620 .. 29037616
1997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00189310.1

Sequence Viewer

Length: 459 bp
ATGGCGGCTGTTTCGCAGTCCGTGGCAACCTGTTCAGGGCATGCTAAACTACCATTTGGACATAACGGGACCAAGATCACTAATCACAACGCTGTTTCAGTAACATGTAGAAGGACTCGTAGGGCAGGAATTAGATGTTTGGCTGTACGTCGGGTTGGCTCCACACATGCTGCGTCTGTGGGAAAGGATCATCATCAGTTGAGTGTTGATGATGGAGTACCTCAGGAGCCCTTCCTTCTGAGTCTTTTCAAAGAAACAGTGTGGTCTTTGAGATCATTATTCGTTTTTCTGCTTGAGCAGCCGAGTCAGCTGAAGTACATTGAATGGCCAGGTTTCCGTAGCACGCTAAAGACTGCGACTCTCACTCTTGTTCTTGTGGCGTTGCTCATTGTAGCACTTTCATCAACTGACTCTGCCCTCAGCTATTTGTTGGCTTTGATTCTCAGGAGAAAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SecE

Protein Analysis

152

Amino Acids

16.64

Weight (kDa)

10.29

Isoelectric Point (pI)

51.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SecE PF00584 96 - 148 1.8e-06 SecE/Sec61-gamma subunits of protein translocation complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 195
AcoI YGGCCR 1 cut(s) 326
AcuI CTGAAG 1 cut(s) 332
AfaI GTAC 3 cut(s) 147, 219, 317
AfiI CCNNNNNNNGG 1 cut(s) 36
AflIII ACRYGT 1 cut(s) 104
AgsI TTSAA 2 cut(s) 250, 323
AjnI CCWGG 1 cut(s) 328
AluBI AGCT 2 cut(s) 310, 423
AluI AGCT 2 cut(s) 310, 423
AlwI GGATC 1 cut(s) 195
AoxI GGCC 1 cut(s) 326
ApeKI GCWGC 2 cut(s) 170, 298
AspS9I GGNCC 1 cut(s) 69
AvaII GGWCC 1 cut(s) 69
AxyI CCTNAGG 1 cut(s) 222
BalI TGGCCA 1 cut(s) 328
BanII GRGCYC 1 cut(s) 231
BbvCI CCTCAGC 1 cut(s) 419
BbvI GCAGC 2 cut(s) 157, 310
BccI CCATC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 330
BisI GCNGC 3 cut(s) 6, 171, 299
BlsI GCNGC 3 cut(s) 7, 172, 300
Bme1390I CCNGG 1 cut(s) 330
Bme18I GGWCC 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 3 cut(s) 70, 160, 228
BmrFI CCNGG 1 cut(s) 330
Bpu10I CCTNAGC 1 cut(s) 419
BpuEI CTTGAG 1 cut(s) 314
BsaBI GATNNNNATC 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 36
Bse21I CCTNAGG 1 cut(s) 222
Bse8I GATNNNNATC 1 cut(s) 192
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 21
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 36
BseMII CTCAG 4 cut(s) 230, 236, 433, 457
BseXI GCAGC 2 cut(s) 157, 310
BshFI GGCC 1 cut(s) 328
BslFI GGGAC 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 36
BsmFI GGGAC 1 cut(s) 82
BsnI GGCC 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 3 cut(s) 75, 187, 272
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 328
BspCNI CTCAG 4 cut(s) 231, 235, 432, 456
BspLI GGNNCC 3 cut(s) 70, 160, 228
BspPI GGATC 1 cut(s) 195
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 3 cut(s) 75, 187, 272
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 259
BstC8I GCNNGC 2 cut(s) 42, 344
BstDEI CTNAG 4 cut(s) 222, 239, 419, 443
BstDSI CCRYGG 1 cut(s) 21
BstKTI GATC 3 cut(s) 78, 190, 275
BstMBI GATC 3 cut(s) 75, 187, 272
BstMWI GCNNNNNNNGC 2 cut(s) 298, 307
BstNI CCWGG 1 cut(s) 330
BstNSI RCATGY 3 cut(s) 44, 108, 170
BstSCI CCNGG 1 cut(s) 328
BstV1I GCAGC 2 cut(s) 157, 310
Bsu36I CCTNAGG 1 cut(s) 222
BsuRI GGCC 1 cut(s) 328
BtgI CCRYGG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 2 cut(s) 42, 344
Cfr13I GGNCC 1 cut(s) 69
CseI GACGC 1 cut(s) 162
Csp6I GTAC 3 cut(s) 146, 218, 316
CviAII CATG 3 cut(s) 41, 105, 167
CviJI RGCY 9 cut(s) 8, 143, 159, 229, 301, 310, 328, 423, 434
CviKI_1 RGCY 9 cut(s) 8, 143, 159, 229, 301, 310, 328, 423, 434
CviQI GTAC 3 cut(s) 146, 218, 316
DdeI CTNAG 4 cut(s) 222, 239, 419, 443
DpnI GATC 3 cut(s) 77, 189, 274
DpnII GATC 3 cut(s) 75, 187, 272
EaeI YGGCCR 1 cut(s) 326
Eco24I GRGCYC 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 332
Eco81I CCTNAGG 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 328
EcoT38I GRGCYC 1 cut(s) 231
FaeI CATG 3 cut(s) 44, 108, 170
FaiI YATR 5 cut(s) 42, 63, 106, 168, 457
FaqI GGGAC 1 cut(s) 82
FatI CATG 3 cut(s) 40, 104, 166
Fnu4HI GCNGC 3 cut(s) 6, 171, 299
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 3 cut(s) 6, 171, 299
GluI GCNGC 3 cut(s) 6, 171, 299
HaeIII GGCC 1 cut(s) 328
HgaI GACGC 1 cut(s) 162
Hin1II CATG 3 cut(s) 44, 108, 170
HinfI GANTC 6 cut(s) 115, 241, 304, 358, 410, 439
Hpy188I TCNGA 1 cut(s) 240
Hpy188III TCNNGA 2 cut(s) 224, 445
Hpy99I CGWCG 1 cut(s) 153
HpyAV CCTTC 3 cut(s) 105, 241, 245
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 148
HpyF10VI GCNNNNNNNGC 2 cut(s) 298, 307
HpyF3I CTNAG 4 cut(s) 222, 239, 419, 443
HpySE526I ACGT 1 cut(s) 148
Hsp92II CATG 3 cut(s) 44, 108, 170
Kzo9I GATC 3 cut(s) 75, 187, 272
LmnI GCTCC 2 cut(s) 164, 226
LpnPI CCDG 7 cut(s) 21, 43, 111, 209, 315, 342, 430
Lsp1109I GCAGC 2 cut(s) 157, 310
MaeII ACGT 1 cut(s) 148
MaeIII GTNAC 1 cut(s) 100
MalI GATC 3 cut(s) 77, 189, 274
MboI GATC 3 cut(s) 75, 187, 272
MhlI GDGCHC 1 cut(s) 231
MlsI TGGCCA 1 cut(s) 328
MluCI AATT 1 cut(s) 129
MluNI TGGCCA 1 cut(s) 328
MlyI GAGTC 5 cut(s) 109, 250, 313, 352, 404
MnlI CCTC 2 cut(s) 231, 428
Mox20I TGGCCA 1 cut(s) 328
MscI TGGCCA 1 cut(s) 328
Msp20I TGGCCA 1 cut(s) 328
MspA1I CMGCKG 1 cut(s) 310
MspR9I CCNGG 1 cut(s) 330
MvaI CCWGG 1 cut(s) 330
MwoI GCNNNNNNNGC 2 cut(s) 298, 307
NdeII GATC 3 cut(s) 75, 187, 272
NlaIII CATG 3 cut(s) 44, 108, 170
NlaIV GGNNCC 3 cut(s) 70, 160, 228
NmeAIII GCCGAG 1 cut(s) 327
NspI RCATGY 3 cut(s) 44, 108, 170
PaeI GCATGC 1 cut(s) 44
PciI ACATGT 1 cut(s) 104
PfeI GAWTC 1 cut(s) 439
PkrI GCNGC 3 cut(s) 7, 172, 300
PleI GAGTC 5 cut(s) 109, 249, 312, 352, 404
PpsI GAGTC 5 cut(s) 109, 249, 312, 352, 404
PscI ACATGT 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 3 cut(s) 70, 160, 228
PspPI GGNCC 1 cut(s) 69
PvuII CAGCTG 1 cut(s) 310
RsaI GTAC 3 cut(s) 147, 219, 317
RsaNI GTAC 3 cut(s) 146, 218, 316
SatI GCNGC 3 cut(s) 6, 171, 299
Sau3AI GATC 3 cut(s) 75, 187, 272
Sau96I GGNCC 1 cut(s) 69
SchI GAGTC 5 cut(s) 109, 250, 313, 352, 404
ScrFI CCNGG 1 cut(s) 330
SduI GDGCHC 1 cut(s) 231
SetI ASST 6 cut(s) 32, 151, 223, 312, 334, 425
SinI GGWCC 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
SphI GCATGC 1 cut(s) 44
Sse9I AATT 1 cut(s) 129
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 328
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 1 cut(s) 151
TasI AATT 1 cut(s) 129
TatI WGTACW 1 cut(s) 315
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 439
TscAI CASTG 1 cut(s) 264
TseI GCWGC 2 cut(s) 170, 298
TspDTI ATGAA 1 cut(s) 390
TspGWI ACGGA 2 cut(s) 10, 326
TspRI CASTG 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 69
XceI RCATGY 3 cut(s) 44, 108, 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.