Rh6DG227800

SecE/Sec61-gamma subunits of protein translocation complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003022
Physical Location & Seq
Reverse (-)
40750356 .. 40825701
75346 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG227800.1

Sequence Viewer

Length: 717 bp
ATGAACAACGATTTCGAATCGGATGCGAAATCAGAATCCGGTGATGACATTAAGGAAGCTAAAGCTAAGGACGACATCATCAGTGAGGATGAGGCTACGGTTTCGCCAATGGTTCTGATGGCAGTGGTTCTATGGGTTAGAGAAAGAGAAGAGTTGGGAGAGTCAATCACTATGTGGCACTATGCTCAAAACTCTGAGCCAAAGTTTGCGCGCGCTATCCAGAGCGACCAAGTGAGCAGGATGGCGGCTGTTTCGCAGTCCGTGGCAACCTGTTCAGGTTTGATTAATCATCCAGGGCATGCTAAACTACCATTTGGACCTAACGGGACCAAGATCACTAATCACAATGCCGTTTCAGTAACATGTAGAAGGACTCGTAGAGCAGGGATTCAATGTTTGGCTGTACATCGGGTTGGCACCACATATGCTGCGTCTGTGGGAAAGGATCATCAGCAGTTGAGTATTGATGATGGAGTACCTCAGGAGCCCTTCCTTCTGAGTCTTTTCAAAGAAATAGTGTGGTCTTTGAGATCATTATTCATTTTTCTGCTTGAGCAGCCAAGTCAGCTGAAGTACATTGAATGGCCAGGTTTCCGTAGTACGCTGAAGACTGCGATTCTCACTCTTGTTCTTGTGGCATTGCTCATTGTAGCACTTTCATCAACTGACTCTGCCCTCAGCTATTTGTTGGCTTTGATTCTCAGGAGTAAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SecE

Protein Analysis

238

Amino Acids

26.25

Weight (kDa)

6.31

Isoelectric Point (pI)

51.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SecE PF00584 182 - 234 2e-06 SecE/Sec61-gamma subunits of protein translocation complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 416
AccII CGCG 2 cut(s) 211, 213
AciI CCGC 1 cut(s) 245
AclWI GGATC 1 cut(s) 453
AcoI YGGCCR 1 cut(s) 584
AcuI CTGAAG 2 cut(s) 590, 626
AdeI CACNNNGTG 1 cut(s) 174
AfaI GTAC 4 cut(s) 405, 477, 575, 601
AflIII ACRYGT 1 cut(s) 362
AgsI TTSAA 3 cut(s) 392, 508, 581
AjnI CCWGG 2 cut(s) 292, 586
AluBI AGCT 4 cut(s) 59, 65, 568, 681
AluI AGCT 4 cut(s) 59, 65, 568, 681
AlwI GGATC 1 cut(s) 453
AoxI GGCC 1 cut(s) 584
ApeKI GCWGC 2 cut(s) 428, 556
AseI ATTAAT 1 cut(s) 285
AspLEI GCGC 3 cut(s) 211, 213, 215
AspS9I GGNCC 2 cut(s) 317, 327
AsuHPI GGTGA 1 cut(s) 53
AsuII TTCGAA 1 cut(s) 15
AvaII GGWCC 2 cut(s) 317, 327
AxyI CCTNAGG 1 cut(s) 480
BalI TGGCCA 1 cut(s) 586
BanI GGYRCC 1 cut(s) 416
BanII GRGCYC 1 cut(s) 489
BbsI GAAGAC 1 cut(s) 614
BbvCI CCTCAGC 1 cut(s) 677
BbvI GCAGC 2 cut(s) 415, 568
BccI CCATC 3 cut(s) 112, 235, 464
BceAI ACGGC 1 cut(s) 335
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BciT130I CCWGG 2 cut(s) 294, 588
BisI GCNGC 3 cut(s) 246, 429, 557
BlsI GCNGC 3 cut(s) 247, 430, 558
Bme1390I CCNGG 2 cut(s) 294, 588
Bme18I GGWCC 2 cut(s) 317, 327
BmgT120I GGNCC 2 cut(s) 317, 327
BmiI GGNNCC 3 cut(s) 328, 418, 486
BmrFI CCNGG 2 cut(s) 294, 588
BmsI GCATC 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 614
Bpu10I CCTNAGC 2 cut(s) 66, 677
Bpu14I TTCGAA 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 572
BsaJI CCNNGG 2 cut(s) 261, 293
BsaWI WCCGGW 1 cut(s) 38
Bse21I CCTNAGG 1 cut(s) 480
Bse3DI GCAATG 1 cut(s) 638
BseBI CCWGG 2 cut(s) 294, 588
BseDI CCNNGG 2 cut(s) 261, 293
BseGI GGATG 4 cut(s) 28, 94, 246, 289
BseMI GCAATG 1 cut(s) 638
BseMII CTCAG 5 cut(s) 186, 488, 494, 691, 715
BsePI GCGCGC 2 cut(s) 209, 211
BseXI GCAGC 2 cut(s) 415, 568
Bsh1236I CGCG 2 cut(s) 211, 213
BshFI GGCC 1 cut(s) 586
BshNI GGYRCC 1 cut(s) 416
BsiSI CCGG 1 cut(s) 39
BslFI GGGAC 1 cut(s) 340
BsmFI GGGAC 1 cut(s) 340
BsnI GGCC 1 cut(s) 586
Bsp119I TTCGAA 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 489
Bsp1407I TGTACA 1 cut(s) 403
Bsp143I GATC 3 cut(s) 333, 445, 530
BspACI CCGC 1 cut(s) 245
BspANI GGCC 1 cut(s) 586
BspCNI CTCAG 5 cut(s) 187, 489, 493, 690, 714
BspFNI CGCG 2 cut(s) 211, 213
BspLI GGNNCC 3 cut(s) 328, 418, 486
BspPI GGATC 1 cut(s) 453
BspT104I TTCGAA 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 638
BsrGI TGTACA 1 cut(s) 403
BssECI CCNNGG 2 cut(s) 261, 293
BssHII GCGCGC 2 cut(s) 209, 211
BssMI GATC 3 cut(s) 333, 445, 530
Bst2UI CCWGG 2 cut(s) 294, 588
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 1 cut(s) 144
BstAUI TGTACA 1 cut(s) 403
BstBI TTCGAA 1 cut(s) 15
BstC8I GCNNGC 3 cut(s) 211, 213, 300
BstDEI CTNAG 6 cut(s) 66, 195, 480, 497, 677, 701
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 4 cut(s) 28, 94, 246, 289
BstFNI CGCG 2 cut(s) 211, 213
BstHHI GCGC 3 cut(s) 211, 213, 215
BstKTI GATC 3 cut(s) 336, 448, 533
BstMBI GATC 3 cut(s) 333, 445, 530
BstMWI GCNNNNNNNGC 2 cut(s) 556, 565
BstNI CCWGG 2 cut(s) 294, 588
BstNSI RCATGY 2 cut(s) 302, 366
BstSCI CCNGG 2 cut(s) 292, 586
BstUI CGCG 2 cut(s) 211, 213
BstV1I GCAGC 2 cut(s) 415, 568
BstV2I GAAGAC 1 cut(s) 614
Bsu36I CCTNAGG 1 cut(s) 480
BsuRI GGCC 1 cut(s) 586
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 4 cut(s) 28, 94, 246, 289
BtsI GCAGTG 1 cut(s) 129
BtsIMutI CAGTG 2 cut(s) 88, 129
Cac8I GCNNGC 3 cut(s) 211, 213, 300
CfoI GCGC 3 cut(s) 211, 213, 215
Cfr13I GGNCC 2 cut(s) 317, 327
CseI GACGC 1 cut(s) 420
Csp6I GTAC 4 cut(s) 404, 476, 574, 600
CviAII CATG 2 cut(s) 299, 363
CviQI GTAC 4 cut(s) 404, 476, 574, 600
DdeI CTNAG 6 cut(s) 66, 195, 480, 497, 677, 701
DpnI GATC 3 cut(s) 335, 447, 532
DpnII GATC 3 cut(s) 333, 445, 530
DraIII CACNNNGTG 1 cut(s) 174
EaeI YGGCCR 1 cut(s) 584
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 489
Eco47I GGWCC 2 cut(s) 317, 327
Eco57I CTGAAG 2 cut(s) 590, 626
Eco81I CCTNAGG 1 cut(s) 480
EcoRII CCWGG 2 cut(s) 292, 586
EcoT38I GRGCYC 1 cut(s) 489
FaeI CATG 2 cut(s) 302, 366
FaiI YATR 8 cut(s) 133, 173, 183, 300, 364, 424, 426, 715
FaqI GGGAC 1 cut(s) 340
FatI CATG 2 cut(s) 298, 362
FauNDI CATATG 1 cut(s) 424
Fnu4HI GCNGC 3 cut(s) 246, 429, 557
FokI GGATG 4 cut(s) 35, 101, 253, 276
FriOI GRGCYC 1 cut(s) 489
Fsp4HI GCNGC 3 cut(s) 246, 429, 557
GlaI GCGC 3 cut(s) 210, 212, 214
GluI GCNGC 3 cut(s) 246, 429, 557
HaeIII GGCC 1 cut(s) 586
HapII CCGG 1 cut(s) 39
HgaI GACGC 1 cut(s) 420
HhaI GCGC 3 cut(s) 211, 213, 215
Hin1II CATG 2 cut(s) 302, 366
Hin6I GCGC 3 cut(s) 209, 211, 213
HinP1I GCGC 3 cut(s) 209, 211, 213
HinfI GANTC 9 cut(s) 17, 35, 161, 373, 388, 499, 616, 668, 697
HpaII CCGG 1 cut(s) 39
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 1 cut(s) 710
Hpy188I TCNGA 5 cut(s) 22, 34, 117, 196, 498
Hpy188III TCNNGA 3 cut(s) 220, 482, 703
Hpy8I GTNNAC 1 cut(s) 710
HpyAV CCTTC 3 cut(s) 363, 499, 503
HpyCH4III ACNGT 1 cut(s) 100
HpyF10VI GCNNNNNNNGC 2 cut(s) 556, 565
HpyF3I CTNAG 6 cut(s) 66, 195, 480, 497, 677, 701
Hsp92II CATG 2 cut(s) 302, 366
HspAI GCGC 3 cut(s) 209, 211, 213
Kzo9I GATC 3 cut(s) 333, 445, 530
LmnI GCTCC 1 cut(s) 484
Lsp1109I GCAGC 2 cut(s) 415, 568
LweI GCATC 1 cut(s) 13
MaeIII GTNAC 1 cut(s) 358
MalI GATC 3 cut(s) 335, 447, 532
MboI GATC 3 cut(s) 333, 445, 530
MboII GAAGA 2 cut(s) 161, 619
MhlI GDGCHC 1 cut(s) 489
MlsI TGGCCA 1 cut(s) 586
MluNI TGGCCA 1 cut(s) 586
MlyI GAGTC 4 cut(s) 170, 367, 508, 662
MnlI CCTC 4 cut(s) 79, 85, 489, 686
Mox20I TGGCCA 1 cut(s) 586
MscI TGGCCA 1 cut(s) 586
MseI TTAA 2 cut(s) 51, 285
Msp20I TGGCCA 1 cut(s) 586
MspA1I CMGCKG 1 cut(s) 568
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 2 cut(s) 294, 588
MvaI CCWGG 2 cut(s) 294, 588
MvnI CGCG 2 cut(s) 211, 213
MwoI GCNNNNNNNGC 2 cut(s) 556, 565
NdeI CATATG 1 cut(s) 424
NdeII GATC 3 cut(s) 333, 445, 530
NlaIII CATG 2 cut(s) 302, 366
NlaIV GGNNCC 3 cut(s) 328, 418, 486
NspI RCATGY 2 cut(s) 302, 366
NspV TTCGAA 1 cut(s) 15
PaeI GCATGC 1 cut(s) 302
PauI GCGCGC 2 cut(s) 209, 211
PciI ACATGT 1 cut(s) 362
PfeI GAWTC 5 cut(s) 17, 35, 388, 616, 697
PkrI GCNGC 3 cut(s) 247, 430, 558
PleI GAGTC 4 cut(s) 169, 367, 507, 662
PpsI GAGTC 4 cut(s) 169, 367, 507, 662
PscI ACATGT 1 cut(s) 362
PshBI ATTAAT 1 cut(s) 285
Psp6I CCWGG 2 cut(s) 292, 586
PspGI CCWGG 2 cut(s) 292, 586
PspN4I GGNNCC 3 cut(s) 328, 418, 486
PspPI GGNCC 2 cut(s) 317, 327
PteI GCGCGC 2 cut(s) 209, 211
PvuII CAGCTG 1 cut(s) 568
RsaI GTAC 4 cut(s) 405, 477, 575, 601
RsaNI GTAC 4 cut(s) 404, 476, 574, 600
SaqAI TTAA 2 cut(s) 51, 285
SatI GCNGC 3 cut(s) 246, 429, 557
Sau3AI GATC 3 cut(s) 333, 445, 530
Sau96I GGNCC 2 cut(s) 317, 327
SchI GAGTC 4 cut(s) 170, 367, 508, 662
ScrFI CCNGG 2 cut(s) 294, 588
SduI GDGCHC 1 cut(s) 489
SetI ASST 9 cut(s) 61, 67, 272, 280, 322, 481, 570, 592, 683
SfaNI GCATC 1 cut(s) 13
SfuI TTCGAA 1 cut(s) 15
SinI GGWCC 2 cut(s) 317, 327
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
SphI GCATGC 1 cut(s) 302
SsiI CCGC 1 cut(s) 245
StyD4I CCNGG 2 cut(s) 292, 586
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 15
TatI WGTACW 2 cut(s) 403, 573
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 5 cut(s) 17, 35, 388, 616, 697
Tru1I TTAA 2 cut(s) 51, 285
Tru9I TTAA 2 cut(s) 51, 285
TscAI CASTG 2 cut(s) 88, 129
TseI GCWGC 2 cut(s) 428, 556
TspDTI ATGAA 3 cut(s) 17, 529, 648
TspGWI ACGGA 2 cut(s) 250, 584
TspRI CASTG 2 cut(s) 88, 129
VpaK11BI GGWCC 2 cut(s) 317, 327
VspI ATTAAT 1 cut(s) 285
XceI RCATGY 2 cut(s) 302, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.