Rw6G020050

SecE/Sec61-gamma subunits of protein translocation complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003022
Physical Location & Seq
Reverse (-)
40087338 .. 40089236
1899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G020050.1

Sequence Viewer

Length: 477 bp
ATGGCGGCTGTTTCGCAGTCCTTGGCTGCCTGTTCAGGTTTGATTAATCATCCAGGTTATGCTAAACTGCCATTTGGACATAACAGGACCAAGATCACTAATCACAGTGCTGTTTCAGTAACATATAGAAGGATTTGTAGGGCAGGAATTAGATGTTTGGCTGTACGTCGGGTTGGCACCACATGTGCTGCGTCTGTGGGAAAGGATCATCATCAGTTGAGCGTTGATGATGGAGTACCTCAGGAGCCCTTCCTTCTGAGTCTTTTCAAAGAAACAGTGTGGTCTTTGAGATCATTATTCGTTTTTCTGCTTGAGCAGCCAAGTCAGCTGAAGTACATTGAATGGCCAGGTTTCCGTAGTACGCTGAAGACTGCGACTCTCACTCTTGTTCTTGTGGCATTGCTCATTGTAGCACTTTCATCAACTGACTCTGCCCTCAGCTATTTGTTGGCTTTGATTCTCAGGAGTAAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SecE

Protein Analysis

158

Amino Acids

17.28

Weight (kDa)

9.83

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SecE PF00584 102 - 154 2e-06 SecE/Sec61-gamma subunits of protein translocation complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 213
AcoI YGGCCR 1 cut(s) 344
AcuI CTGAAG 2 cut(s) 350, 386
AfaI GTAC 4 cut(s) 165, 237, 335, 361
AflIII ACRYGT 1 cut(s) 182
AgsI TTSAA 2 cut(s) 268, 341
AjnI CCWGG 2 cut(s) 52, 346
AluBI AGCT 2 cut(s) 328, 441
AluI AGCT 2 cut(s) 328, 441
AlwI GGATC 1 cut(s) 213
AoxI GGCC 1 cut(s) 344
ApeKI GCWGC 3 cut(s) 26, 188, 316
AseI ATTAAT 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 87
AvaII GGWCC 1 cut(s) 87
AxyI CCTNAGG 1 cut(s) 240
BalI TGGCCA 1 cut(s) 346
BanI GGYRCC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 374
BbvCI CCTCAGC 1 cut(s) 437
BbvI GCAGC 3 cut(s) 13, 175, 328
BccI CCATC 1 cut(s) 224
BciT130I CCWGG 2 cut(s) 54, 348
BisI GCNGC 4 cut(s) 6, 27, 189, 317
BlsI GCNGC 4 cut(s) 7, 28, 190, 318
Bme1390I CCNGG 2 cut(s) 54, 348
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 2 cut(s) 178, 246
BmrFI CCNGG 2 cut(s) 54, 348
BpiI GAAGAC 1 cut(s) 374
Bpu10I CCTNAGC 1 cut(s) 437
BpuEI CTTGAG 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 21
Bse21I CCTNAGG 1 cut(s) 240
Bse3DI GCAATG 1 cut(s) 398
Bse8I GATNNNNATC 1 cut(s) 210
BseBI CCWGG 2 cut(s) 54, 348
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 49
BseJI GATNNNNATC 1 cut(s) 210
BseMI GCAATG 1 cut(s) 398
BseMII CTCAG 4 cut(s) 248, 254, 451, 475
BseXI GCAGC 3 cut(s) 13, 175, 328
BshFI GGCC 1 cut(s) 346
BshNI GGYRCC 1 cut(s) 176
BsnI GGCC 1 cut(s) 346
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 3 cut(s) 93, 205, 290
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 346
BspCNI CTCAG 4 cut(s) 249, 253, 450, 474
BspLI GGNNCC 2 cut(s) 178, 246
BspPI GGATC 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 398
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 3 cut(s) 93, 205, 290
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 2 cut(s) 54, 348
Bst4CI ACNGT 2 cut(s) 107, 277
BstDEI CTNAG 4 cut(s) 240, 257, 437, 461
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 3 cut(s) 96, 208, 293
BstMBI GATC 3 cut(s) 93, 205, 290
BstMWI GCNNNNNNNGC 2 cut(s) 316, 325
BstNI CCWGG 2 cut(s) 54, 348
BstNSI RCATGY 1 cut(s) 186
BstSCI CCNGG 2 cut(s) 52, 346
BstV1I GCAGC 3 cut(s) 13, 175, 328
BstV2I GAAGAC 1 cut(s) 374
Bsu36I CCTNAGG 1 cut(s) 240
BsuRI GGCC 1 cut(s) 346
BtsCI GGATG 1 cut(s) 49
BtsIMutI CAGTG 2 cut(s) 112, 282
Cfr13I GGNCC 1 cut(s) 87
CseI GACGC 1 cut(s) 180
Csp6I GTAC 4 cut(s) 164, 236, 334, 360
CviAII CATG 1 cut(s) 183
CviJI RGCY 9 cut(s) 8, 26, 161, 247, 319, 328, 346, 441, 452
CviKI_1 RGCY 9 cut(s) 8, 26, 161, 247, 319, 328, 346, 441, 452
CviQI GTAC 4 cut(s) 164, 236, 334, 360
DdeI CTNAG 4 cut(s) 240, 257, 437, 461
DpnI GATC 3 cut(s) 95, 207, 292
DpnII GATC 3 cut(s) 93, 205, 290
EaeI YGGCCR 1 cut(s) 344
Eco130I CCWWGG 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 87
Eco57I CTGAAG 2 cut(s) 350, 386
Eco81I CCTNAGG 1 cut(s) 240
EcoRII CCWGG 2 cut(s) 52, 346
EcoT14I CCWWGG 1 cut(s) 21
EcoT38I GRGCYC 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 1 cut(s) 186
FaiI YATR 6 cut(s) 60, 81, 124, 126, 184, 475
FatI CATG 1 cut(s) 182
Fnu4HI GCNGC 4 cut(s) 6, 27, 189, 317
FokI GGATG 1 cut(s) 36
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 4 cut(s) 6, 27, 189, 317
GluI GCNGC 4 cut(s) 6, 27, 189, 317
HaeIII GGCC 1 cut(s) 346
HgaI GACGC 1 cut(s) 180
Hin1II CATG 1 cut(s) 186
HinfI GANTC 4 cut(s) 259, 376, 428, 457
Hpy166II GTNNAC 1 cut(s) 470
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 2 cut(s) 242, 463
Hpy8I GTNNAC 1 cut(s) 470
Hpy99I CGWCG 1 cut(s) 171
HpyAV CCTTC 3 cut(s) 123, 259, 263
HpyCH4III ACNGT 2 cut(s) 107, 277
HpyCH4IV ACGT 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 2 cut(s) 316, 325
HpyF3I CTNAG 4 cut(s) 240, 257, 437, 461
HpySE526I ACGT 1 cut(s) 166
Hsp92II CATG 1 cut(s) 186
Kzo9I GATC 3 cut(s) 93, 205, 290
LmnI GCTCC 1 cut(s) 244
Lsp1109I GCAGC 3 cut(s) 13, 175, 328
MaeII ACGT 1 cut(s) 166
MaeIII GTNAC 1 cut(s) 118
MalI GATC 3 cut(s) 95, 207, 292
MboI GATC 3 cut(s) 93, 205, 290
MboII GAAGA 1 cut(s) 379
MhlI GDGCHC 1 cut(s) 249
MlsI TGGCCA 1 cut(s) 346
MluCI AATT 1 cut(s) 147
MluNI TGGCCA 1 cut(s) 346
MlyI GAGTC 3 cut(s) 268, 370, 422
MnlI CCTC 2 cut(s) 249, 446
Mox20I TGGCCA 1 cut(s) 346
MscI TGGCCA 1 cut(s) 346
MseI TTAA 1 cut(s) 45
Msp20I TGGCCA 1 cut(s) 346
MspA1I CMGCKG 1 cut(s) 328
MspR9I CCNGG 2 cut(s) 54, 348
MvaI CCWGG 2 cut(s) 54, 348
MwoI GCNNNNNNNGC 2 cut(s) 316, 325
NdeII GATC 3 cut(s) 93, 205, 290
NlaIII CATG 1 cut(s) 186
NlaIV GGNNCC 2 cut(s) 178, 246
NspI RCATGY 1 cut(s) 186
PciI ACATGT 1 cut(s) 182
PfeI GAWTC 1 cut(s) 457
PkrI GCNGC 4 cut(s) 7, 28, 190, 318
PleI GAGTC 3 cut(s) 267, 370, 422
PpsI GAGTC 3 cut(s) 267, 370, 422
PscI ACATGT 1 cut(s) 182
PshBI ATTAAT 1 cut(s) 45
Psp6I CCWGG 2 cut(s) 52, 346
PspGI CCWGG 2 cut(s) 52, 346
PspN4I GGNNCC 2 cut(s) 178, 246
PspPI GGNCC 1 cut(s) 87
PvuII CAGCTG 1 cut(s) 328
RsaI GTAC 4 cut(s) 165, 237, 335, 361
RsaNI GTAC 4 cut(s) 164, 236, 334, 360
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 4 cut(s) 6, 27, 189, 317
Sau3AI GATC 3 cut(s) 93, 205, 290
Sau96I GGNCC 1 cut(s) 87
SchI GAGTC 3 cut(s) 268, 370, 422
ScrFI CCNGG 2 cut(s) 54, 348
SduI GDGCHC 1 cut(s) 249
SetI ASST 7 cut(s) 40, 58, 169, 241, 330, 352, 443
SinI GGWCC 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 1 cut(s) 147
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 2 cut(s) 52, 346
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 107, 277
TaiI ACGT 1 cut(s) 169
TasI AATT 1 cut(s) 147
TatI WGTACW 1 cut(s) 333
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 457
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 2 cut(s) 112, 282
TseI GCWGC 3 cut(s) 26, 188, 316
TspDTI ATGAA 1 cut(s) 408
TspGWI ACGGA 1 cut(s) 344
TspRI CASTG 2 cut(s) 112, 282
VpaK11BI GGWCC 1 cut(s) 87
VspI ATTAAT 1 cut(s) 45
XceI RCATGY 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.