Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0003022

Physical Location & Seq

Genomic Coordinates Reverse (-)

17416070 .. 17418048

Gene Structure 1979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G169100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAGGGCTGTTTCGCAGTCAGTGGCAAACTGTTCAGGTTTGATTCATAATTCCGGTCATGCTAAACTGCCATTTGGAATTAGGAAATATAATGGGGCCAAAATTGATAATTACGATTCCATTTCAATGGCATCTAGAAGGACTGTTAAAGGAGGGATTCAATATTTGCCTGCACGTCGTATTGGCACCATATGTGCTGCATCTGTGGGGAGGGATCGTCGTCAATTGAGCTTTGATGATGATTTACCTCAGGATCCCTACTTTTTGAGTCTTGTCAAAGAAGCAGTGTGGGGTTTGAGATCGTTATTCATTTTTCTGGTTGAGCAGCCTAGTCAGCTGAAGTACATTGAATGGCCAGGTTTCCGTAGCACGCTGAAGACTGCTACTCTGACTCTTGTTCTTGTGGCGCTACTCATTGTGGCACTTTCATCAACTGACTCTGCCCTCAGCTATCTGTTGGCTTTGATTCTCAGGCGAACCCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SecE

Protein Analysis

162

Amino Acids

17.83

Weight (kDa)

9.95

Isoelectric Point (pI)

54.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38490
fragaria_vesca	FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660
malus_domestica	MD10G1127900.v1.1 MD10G1128000.v1.1
prunus_persica	Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1
pyrus_communis	pycom10g10960
rosa_chinensis	RchiOBHm_Chr6g0278901 RchiOBHm_Chr6g0278921 RchiOBHm_Chr6g0278961
rosa_multiflora	Rmu_sc0000309.1_g000056 Rmu_sc0009618.1_g000001 Rmu_sc0009618.1_g000014
rosa_roxburghii	Rroxscaffold_7G00189310 Rroxscaffold_7G00189390 Rroxscaffold_7G00189530
rosa_rugosa	Rorug06G0120200 Rorug06G0120400 Rorug06G0120500 Rorug06G0120500
rosa_samantha	Rh6AG229100 Rh6BG234300 Rh6CG236500 Rh6DG227800 Rh6DG228100
rosa_wichuraiana	Rw6G020050 Rw6G020060 Rw6G020170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	185
AclWI	GGATC	3 cut(s)	222, 248, 261
AcoI	YGGCCR	1 cut(s)	353
AcuI	CTGAAG	2 cut(s)	359, 395
AfaI	GTAC	1 cut(s)	344
AgsI	TTSAA	3 cut(s)	126, 161, 350
AjiI	CACGTC	1 cut(s)	176
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	3 cut(s)	231, 337, 450
AluI	AGCT	3 cut(s)	231, 337, 450
AlwI	GGATC	3 cut(s)	222, 248, 261
AoxI	GGCC	2 cut(s)	96, 353
ApeKI	GCWGC	2 cut(s)	197, 325
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	96
AxyI	CCTNAGG	1 cut(s)	249
BalI	TGGCCA	1 cut(s)	355
BamHI	GGATCC	1 cut(s)	253
BanI	GGYRCC	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	383
BbvCI	CCTCAGC	1 cut(s)	446
BbvI	GCAGC	2 cut(s)	184, 337
BciT130I	CCWGG	1 cut(s)	357
BfaI	CTAG	2 cut(s)	135, 330
BfoI	RGCGCY	1 cut(s)	410
BisI	GCNGC	2 cut(s)	198, 326
BlsI	GCNGC	2 cut(s)	199, 327
Bme1390I	CCNGG	1 cut(s)	357
BmgBI	CACGTC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	3 cut(s)	97, 187, 255
BmrFI	CCNGG	1 cut(s)	357
BmsI	GCATC	2 cut(s)	140, 209
BpiI	GAAGAC	1 cut(s)	383
Bpu10I	CCTNAGC	1 cut(s)	446
BsaWI	WCCGGW	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bse21I	CCTNAGG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	357
BseMII	CTCAG	3 cut(s)	263, 460, 484
BseXI	GCAGC	2 cut(s)	184, 337
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	98, 355
BshNI	GGYRCC	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	54
BsnI	GGCC	2 cut(s)	98, 355
Bsp143I	GATC	3 cut(s)	214, 253, 299
BspANI	GGCC	2 cut(s)	98, 355
BspCNI	CTCAG	3 cut(s)	262, 459, 483
BspLI	GGNNCC	3 cut(s)	97, 187, 255
BspPI	GGATC	3 cut(s)	222, 248, 261
BspT107I	GGYRCC	1 cut(s)	185
BssMI	GATC	3 cut(s)	214, 253, 299
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	2 cut(s)	32, 145
BstC8I	GCNNGC	2 cut(s)	171, 371
BstDEI	CTNAG	3 cut(s)	249, 446, 470
BstH2I	RGCGCY	1 cut(s)	410
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	3 cut(s)	217, 256, 302
BstMBI	GATC	3 cut(s)	214, 253, 299
BstMWI	GCNNNNNNNGC	1 cut(s)	334
BstNI	CCWGG	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	355
BstV1I	GCAGC	2 cut(s)	184, 337
BstV2I	GAAGAC	1 cut(s)	383
BstX2I	RGATCY	1 cut(s)	253
BstXI	CCANNNNNNTGG	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	253
Bsu36I	CCTNAGG	1 cut(s)	249
BsuRI	GGCC	2 cut(s)	98, 355
BtrI	CACGTC	1 cut(s)	176
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	2 cut(s)	27, 291
Cac8I	GCNNGC	2 cut(s)	171, 371
CfoI	GCGC	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	96
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	1 cut(s)	59
CviJI	RGCY	8 cut(s)	8, 98, 231, 328, 337, 355, 450, 461
CviKI_1	RGCY	8 cut(s)	8, 98, 231, 328, 337, 355, 450, 461
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	3 cut(s)	249, 446, 470
DpnI	GATC	3 cut(s)	216, 255, 301
DpnII	GATC	3 cut(s)	214, 253, 299
EaeI	YGGCCR	1 cut(s)	353
Eco57I	CTGAAG	2 cut(s)	359, 395
Eco81I	CCTNAGG	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	355
FaeI	CATG	1 cut(s)	62
FaiI	YATR	5 cut(s)	48, 60, 90, 191, 193
FatI	CATG	1 cut(s)	58
FauNDI	CATATG	1 cut(s)	191
Fnu4HI	GCNGC	2 cut(s)	198, 326
Fsp4HI	GCNGC	2 cut(s)	198, 326
FspBI	CTAG	2 cut(s)	135, 330
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	2 cut(s)	198, 326
HaeII	RGCGCY	1 cut(s)	410
HaeIII	GGCC	2 cut(s)	98, 355
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	1 cut(s)	62
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HinfI	GANTC	7 cut(s)	43, 116, 157, 268, 391, 437, 466
HpaII	CCGG	1 cut(s)	54
Hpy188I	TCNGA	1 cut(s)	390
Hpy188III	TCNNGA	2 cut(s)	135, 251
Hpy99I	CGWCG	2 cut(s)	180, 222
HpyAV	CCTTC	1 cut(s)	132
HpyCH4III	ACNGT	2 cut(s)	32, 145
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	2 cut(s)	173, 200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	334
HpyF3I	CTNAG	3 cut(s)	249, 446, 470
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	1 cut(s)	62
HspAI	GCGC	1 cut(s)	407
Kzo9I	GATC	3 cut(s)	214, 253, 299
LpnPI	CCDG	8 cut(s)	21, 67, 183, 236, 302, 342, 369, 457
Lsp1109I	GCAGC	2 cut(s)	184, 337
LweI	GCATC	2 cut(s)	140, 209
MaeI	CTAG	2 cut(s)	135, 330
MaeII	ACGT	1 cut(s)	175
MalI	GATC	3 cut(s)	216, 255, 301
MboI	GATC	3 cut(s)	214, 253, 299
MboII	GAAGA	1 cut(s)	388
MfeI	CAATTG	1 cut(s)	224
MflI	RGATCY	1 cut(s)	253
MlsI	TGGCCA	1 cut(s)	355
MluCI	AATT	5 cut(s)	49, 78, 102, 109, 224
MluNI	TGGCCA	1 cut(s)	355
MlyI	GAGTC	3 cut(s)	277, 385, 431
MnlI	CCTC	4 cut(s)	146, 204, 258, 455
Mox20I	TGGCCA	1 cut(s)	355
MscI	TGGCCA	1 cut(s)	355
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	355
MspA1I	CMGCKG	1 cut(s)	337
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	357
MunI	CAATTG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	1 cut(s)	334
NdeI	CATATG	1 cut(s)	191
NdeII	GATC	3 cut(s)	214, 253, 299
NlaIII	CATG	1 cut(s)	62
NlaIV	GGNNCC	3 cut(s)	97, 187, 255
PfeI	GAWTC	4 cut(s)	43, 116, 157, 466
PkrI	GCNGC	2 cut(s)	199, 327
PleI	GAGTC	3 cut(s)	276, 385, 431
PpsI	GAGTC	3 cut(s)	276, 385, 431
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	3 cut(s)	97, 187, 255
PspPI	GGNCC	1 cut(s)	96
PsuI	RGATCY	1 cut(s)	253
PvuII	CAGCTG	1 cut(s)	337
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	2 cut(s)	198, 326
Sau3AI	GATC	3 cut(s)	214, 253, 299
Sau96I	GGNCC	1 cut(s)	96
SchI	GAGTC	3 cut(s)	277, 385, 431
ScrFI	CCNGG	1 cut(s)	357
SetI	ASST	7 cut(s)	40, 178, 233, 250, 339, 361, 452
SfaNI	GCATC	2 cut(s)	140, 209
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	5 cut(s)	49, 78, 102, 109, 224
SspI	AATATT	1 cut(s)	164
SspMI	CTAG	2 cut(s)	135, 330
StyD4I	CCNGG	1 cut(s)	355
TaaI	ACNGT	2 cut(s)	32, 145
TaiI	ACGT	1 cut(s)	178
TasI	AATT	5 cut(s)	49, 78, 102, 109, 224
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	4 cut(s)	43, 116, 157, 466
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	2 cut(s)	27, 291
TseI	GCWGC	2 cut(s)	197, 325
TspDTI	ATGAA	3 cut(s)	35, 298, 417
TspGWI	ACGGA	1 cut(s)	353
TspRI	CASTG	2 cut(s)	27, 291
XbaI	TCTAGA	1 cut(s)	134
XspI	CTAG	2 cut(s)	135, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.