Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003022

Physical Location & Seq

Genomic Coordinates Reverse (-)

14509230 .. 14511133

Gene Structure 1904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10960.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGTTTGTTTGCAGTGCTTTGAAATGACCAAAATGATTTTTAGAGAAAATATTTTTAGATTCCAAAAGCATTTGAATTTACTAACATTTGGTTCTAAAAATATTTTATCTAAAAACACTTTTCCAACTAGTTACAACGCCGCACATTGGCAGAAGGAGAAACAAAACGGTGGCAGTCCGATTGTCCGTCATTTTCTGATATCGTCCTTCTCTATCTATACAACTAACGACAGTGTGCGCGCGCGCGCGCGAACCAGAGCGACCGGGTCGAGCAGGATGGCGGCTGTTTCGCAGTCGGTGGCAAGCTTCTGTTCAGGTTTGGTTCGTCATTCCAGTCATGCTAAACTACCGTTTGGAATCAGACAGTGTAATGGGGTCAAAATCAATAACTGCAATTATGTTTCAGTAACTTCCAGAAGGATTGTTAGAGGAGGAAGAGTGATTCAGTATTTGCCTGCACGTCGTGTAGGCACCATATACGCTGCATCTGTGGGAGGGGACCATAGTCAATTGAGAATTGATGACGATTCACCTCAGGAGCCCTACTTTTTAAGTCTTGTCAAAGAAGCAGTGTGGGGGTTGAGATTGTTATTCGTTTTTCTGGTTGAGCAGCCTAGTCAGCTGAAGTACATCGAATGGCCAGGCTTCCGTAGCACGCTTAAGACTGCTACACTTACACTTGTTCTTGTGGCGCTACTCATCGTGGCACTTTCATCAACAGACTCTGCCCTCAGCTATTTGTTGGCTTTAATTCTCAGGCGAACCCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SecE

Protein Analysis

257

Amino Acids

28.72

Weight (kDa)

10.32

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38490
fragaria_vesca	FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660
malus_domestica	MD10G1127900.v1.1 MD10G1128000.v1.1
prunus_persica	Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1
pyrus_communis	pycom10g10960
rosa_chinensis	RchiOBHm_Chr6g0278901 RchiOBHm_Chr6g0278921 RchiOBHm_Chr6g0278961
rosa_multiflora	Rmu_sc0000309.1_g000056 Rmu_sc0009618.1_g000001 Rmu_sc0009618.1_g000014
rosa_roxburghii	Rroxscaffold_7G00189310 Rroxscaffold_7G00189390 Rroxscaffold_7G00189530
rosa_rugosa	Rorug06G0120200 Rorug06G0120400 Rorug06G0120500 Rorug06G0120500
rosa_samantha	Rh6AG229100 Rh6BG234300 Rh6CG236500 Rh6DG227800 Rh6DG228100
rosa_wichuraiana	Rw6G020050 Rw6G020060 Rw6G020170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	470
AccII	CGCG	6 cut(s)	240, 242, 244, 246, 248, 250
AciI	CCGC	2 cut(s)	141, 281
AcoI	YGGCCR	1 cut(s)	638
AcsI	RAATTY	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	644
AdeI	CACNNNGTG	1 cut(s)	464
AfaI	GTAC	1 cut(s)	629
AfiI	CCNNNNNNNGG	1 cut(s)	147
AflII	CTTAAG	1 cut(s)	659
AgsI	TTSAA	2 cut(s)	23, 76
AhlI	ACTAGT	1 cut(s)	128
AjiI	CACGTC	1 cut(s)	461
AjnI	CCWGG	1 cut(s)	640
AluBI	AGCT	3 cut(s)	306, 622, 735
AluI	AGCT	3 cut(s)	306, 622, 735
AlwNI	CAGNNNCTG	1 cut(s)	725
AoxI	GGCC	1 cut(s)	638
ApeKI	GCWGC	2 cut(s)	482, 610
ApoI	RAATTY	1 cut(s)	76
AspLEI	GCGC	7 cut(s)	240, 242, 244, 246, 248, 250, 694
AspS9I	GGNCC	1 cut(s)	499
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	522
AvaII	GGWCC	1 cut(s)	499
AxyI	CCTNAGG	1 cut(s)	534
BalI	TGGCCA	1 cut(s)	640
BanI	GGYRCC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	543
BbvCI	CCTCAGC	1 cut(s)	731
BbvI	GCAGC	2 cut(s)	469, 622
BccI	CCATC	1 cut(s)	271
BciT130I	CCWGG	1 cut(s)	642
BcnI	CCSGG	1 cut(s)	265
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	2 cut(s)	129, 615
BfoI	RGCGCY	1 cut(s)	695
BfrI	CTTAAG	1 cut(s)	659
BisI	GCNGC	4 cut(s)	141, 282, 483, 611
BlsI	GCNGC	4 cut(s)	142, 283, 484, 612
Bme1390I	CCNGG	2 cut(s)	265, 642
Bme18I	GGWCC	1 cut(s)	499
BmgBI	CACGTC	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	499
BmiI	GGNNCC	3 cut(s)	472, 500, 540
BmrFI	CCNGG	2 cut(s)	265, 642
BmsI	GCATC	1 cut(s)	494
BoxI	GACNNNNGTC	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	731
BpuMI	CCSGG	1 cut(s)	265
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bsc4I	CCNNNNNNNGG	1 cut(s)	147
Bse1I	ACTGG	1 cut(s)	333
Bse21I	CCTNAGG	1 cut(s)	534
BseBI	CCWGG	1 cut(s)	642
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	147
BseMII	CTCAG	3 cut(s)	548, 745, 769
BseNI	ACTGG	1 cut(s)	333
BsePI	GCGCGC	5 cut(s)	238, 240, 242, 244, 246
BseRI	GAGGAG	1 cut(s)	444
BseXI	GCAGC	2 cut(s)	469, 622
BsgI	GTGCAG	1 cut(s)	441
Bsh1236I	CGCG	6 cut(s)	240, 242, 244, 246, 248, 250
Bsh1285I	CGRYCG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	640
BshNI	GGYRCC	1 cut(s)	470
BsiEI	CGRYCG	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	512
BsnI	GGCC	1 cut(s)	640
Bsp1286I	GDGCHC	1 cut(s)	543
BspACI	CCGC	2 cut(s)	141, 281
BspANI	GGCC	1 cut(s)	640
BspCNI	CTCAG	3 cut(s)	547, 744, 768
BspFNI	CGCG	6 cut(s)	240, 242, 244, 246, 248, 250
BspLI	GGNNCC	3 cut(s)	472, 500, 540
BspT107I	GGYRCC	1 cut(s)	470
BspTI	CTTAAG	1 cut(s)	659
BsrI	ACTGG	1 cut(s)	333
BssHII	GCGCGC	5 cut(s)	238, 240, 242, 244, 246
Bst2UI	CCWGG	1 cut(s)	642
Bst4CI	ACNGT	4 cut(s)	170, 233, 351, 366
Bst6I	CTCTTC	1 cut(s)	430
BstAFI	CTTAAG	1 cut(s)	659
BstC8I	GCNNGC	8 cut(s)	240, 242, 244, 246, 248, 304, 456, 656
BstDEI	CTNAG	3 cut(s)	534, 731, 755
BstF5I	GGATG	1 cut(s)	282
BstFNI	CGCG	6 cut(s)	240, 242, 244, 246, 248, 250
BstH2I	RGCGCY	1 cut(s)	695
BstHHI	GCGC	7 cut(s)	240, 242, 244, 246, 248, 250, 694
BstMCI	CGRYCG	1 cut(s)	264
BstMWI	GCNNNNNNNGC	2 cut(s)	619, 651
BstNI	CCWGG	1 cut(s)	642
BstPAI	GACNNNNGTC	1 cut(s)	504
BstSCI	CCNGG	2 cut(s)	263, 640
BstUI	CGCG	6 cut(s)	240, 242, 244, 246, 248, 250
BstV1I	GCAGC	2 cut(s)	469, 622
Bsu36I	CCTNAGG	1 cut(s)	534
BsuRI	GGCC	1 cut(s)	640
BtrI	CACGTC	1 cut(s)	461
BtsCI	GGATG	1 cut(s)	282
BtsI	GCAGTG	2 cut(s)	20, 576
BtsIMutI	CAGTG	4 cut(s)	20, 238, 371, 576
Cac8I	GCNNGC	8 cut(s)	240, 242, 244, 246, 248, 304, 456, 656
CaiI	CAGNNNCTG	1 cut(s)	725
CfoI	GCGC	7 cut(s)	240, 242, 244, 246, 248, 250, 694
Cfr13I	GGNCC	1 cut(s)	499
Csp6I	GTAC	1 cut(s)	628
CviAII	CATG	1 cut(s)	338
CviJI	RGCY	9 cut(s)	284, 306, 541, 613, 622, 640, 645, 735, 746
CviKI_1	RGCY	9 cut(s)	284, 306, 541, 613, 622, 640, 645, 735, 746
CviQI	GTAC	1 cut(s)	628
DdeI	CTNAG	3 cut(s)	534, 731, 755
DraIII	CACNNNGTG	1 cut(s)	464
EaeI	YGGCCR	1 cut(s)	638
Eam1104I	CTCTTC	1 cut(s)	430
EarI	CTCTTC	1 cut(s)	430
Eco24I	GRGCYC	1 cut(s)	543
Eco32I	GATATC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	499
Eco57I	CTGAAG	1 cut(s)	644
Eco81I	CCTNAGG	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	640
EcoRV	GATATC	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	543
FaeI	CATG	1 cut(s)	341
FaiI	YATR	6 cut(s)	219, 339, 399, 476, 478, 504
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	1 cut(s)	337
Fnu4HI	GCNGC	4 cut(s)	141, 282, 483, 611
FokI	GGATG	1 cut(s)	289
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	4 cut(s)	141, 282, 483, 611
FspBI	CTAG	2 cut(s)	129, 615
GlaI	GCGC	7 cut(s)	239, 241, 243, 245, 247, 249, 693
GluI	GCNGC	4 cut(s)	141, 282, 483, 611
HaeII	RGCGCY	1 cut(s)	695
HaeIII	GGCC	1 cut(s)	640
HapII	CCGG	1 cut(s)	264
HhaI	GCGC	7 cut(s)	240, 242, 244, 246, 248, 250, 694
Hin1II	CATG	1 cut(s)	341
Hin6I	GCGC	7 cut(s)	238, 240, 242, 244, 246, 248, 692
HinP1I	GCGC	7 cut(s)	238, 240, 242, 244, 246, 248, 692
HindIII	AAGCTT	1 cut(s)	304
HinfI	GANTC	5 cut(s)	60, 357, 442, 527, 722
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	1 cut(s)	522
Hpy188I	TCNGA	3 cut(s)	180, 198, 362
Hpy188III	TCNNGA	2 cut(s)	414, 536
Hpy99I	CGWCG	1 cut(s)	465
HpyAV	CCTTC	3 cut(s)	148, 217, 411
HpyCH4III	ACNGT	4 cut(s)	170, 233, 351, 366
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	4 cut(s)	13, 393, 458, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	619, 651
HpyF3I	CTNAG	3 cut(s)	534, 731, 755
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	1 cut(s)	341
HspAI	GCGC	7 cut(s)	238, 240, 242, 244, 246, 248, 692
LmnI	GCTCC	1 cut(s)	538
Lsp1109I	GCAGC	2 cut(s)	469, 622
LweI	GCATC	1 cut(s)	494
MaeI	CTAG	2 cut(s)	129, 615
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	2 cut(s)	131, 406
MauBI	CGCGCGCG	4 cut(s)	240, 242, 244, 246
MboII	GAAGA	1 cut(s)	447
MfeI	CAATTG	1 cut(s)	509
MhlI	GDGCHC	1 cut(s)	543
MlsI	TGGCCA	1 cut(s)	640
MluCI	AATT	5 cut(s)	76, 394, 509, 516, 750
MluNI	TGGCCA	1 cut(s)	640
MlyI	GAGTC	1 cut(s)	716
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	5 cut(s)	422, 425, 488, 543, 740
Mox20I	TGGCCA	1 cut(s)	640
MscI	TGGCCA	1 cut(s)	640
MseI	TTAA	3 cut(s)	551, 660, 749
Msp20I	TGGCCA	1 cut(s)	640
MspA1I	CMGCKG	1 cut(s)	622
MspCI	CTTAAG	1 cut(s)	659
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	2 cut(s)	265, 642
MunI	CAATTG	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	642
MvnI	CGCG	6 cut(s)	240, 242, 244, 246, 248, 250
MwoI	GCNNNNNNNGC	2 cut(s)	619, 651
NciI	CCSGG	1 cut(s)	265
NlaIII	CATG	1 cut(s)	341
NlaIV	GGNNCC	3 cut(s)	472, 500, 540
PauI	GCGCGC	5 cut(s)	238, 240, 242, 244, 246
PfeI	GAWTC	4 cut(s)	60, 357, 442, 527
PflFI	GACNNNGTC	1 cut(s)	265
PkrI	GCNGC	4 cut(s)	142, 283, 484, 612
PleI	GAGTC	1 cut(s)	716
PpsI	GAGTC	1 cut(s)	716
PshAI	GACNNNNGTC	1 cut(s)	504
Psp6I	CCWGG	1 cut(s)	640
PspGI	CCWGG	1 cut(s)	640
PspN4I	GGNNCC	3 cut(s)	472, 500, 540
PspPI	GGNCC	1 cut(s)	499
PstNI	CAGNNNCTG	1 cut(s)	725
PsyI	GACNNNGTC	1 cut(s)	265
PteI	GCGCGC	5 cut(s)	238, 240, 242, 244, 246
PvuII	CAGCTG	1 cut(s)	622
RsaI	GTAC	1 cut(s)	629
RsaNI	GTAC	1 cut(s)	628
SaqAI	TTAA	3 cut(s)	551, 660, 749
SatI	GCNGC	4 cut(s)	141, 282, 483, 611
Sau96I	GGNCC	1 cut(s)	499
SchI	GAGTC	1 cut(s)	716
ScrFI	CCNGG	2 cut(s)	265, 642
SduI	GDGCHC	1 cut(s)	543
SetI	ASST	6 cut(s)	308, 319, 463, 535, 624, 737
SfaNI	GCATC	1 cut(s)	494
SinI	GGWCC	1 cut(s)	499
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
SpeI	ACTAGT	1 cut(s)	128
Sse9I	AATT	5 cut(s)	76, 394, 509, 516, 750
SsiI	CCGC	2 cut(s)	141, 281
SspI	AATATT	2 cut(s)	52, 103
SspMI	CTAG	2 cut(s)	129, 615
StyD4I	CCNGG	2 cut(s)	263, 640
TaaI	ACNGT	4 cut(s)	170, 233, 351, 366
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	2 cut(s)	269, 633
TasI	AATT	5 cut(s)	76, 394, 509, 516, 750
TatI	WGTACW	1 cut(s)	627
TauI	GCSGC	2 cut(s)	143, 284
TfiI	GAWTC	4 cut(s)	60, 357, 442, 527
Tru1I	TTAA	3 cut(s)	551, 660, 749
Tru9I	TTAA	3 cut(s)	551, 660, 749
TscAI	CASTG	4 cut(s)	20, 238, 371, 576
TseI	GCWGC	2 cut(s)	482, 610
TspDTI	ATGAA	1 cut(s)	702
TspGWI	ACGGA	2 cut(s)	176, 638
TspRI	CASTG	4 cut(s)	20, 238, 371, 576
Tth111I	GACNNNGTC	1 cut(s)	265
Vha464I	CTTAAG	1 cut(s)	659
VpaK11BI	GGWCC	1 cut(s)	499
XapI	RAATTY	1 cut(s)	76
XspI	CTAG	2 cut(s)	129, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.