Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003022

Physical Location & Seq

Genomic Coordinates Reverse (-)

40063399 .. 40218671

Gene Structure 155273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG236500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCGGCTGTTTTGCAGTCCGTGGCAACCTGTTCAGGTTTGATTAATCATCCAGGGCAAGCTAAACTACCATTTGGACATAACGGGACCAAGATCACTAATCACAATACCATTTCAGTAACATGTAGAAGGACTCGTAGGGCAGGGATTAGATGTTTGGCTGTATGTTGGGTTGGCACCACATATGCTGCGTCTGTGGGAAACGATCATCATCAGTTGAGTATTGATGATGGAGTACCTCAGGAGCCCTTCCTTCTAAGTCTTTTCAAAGAAACAGTGTGGTCTTTGAGATCATTATTCGTTTTTCTGCTTGAGCAGCCGAGTCAGCTGAAGTATATTGAATGGCCAGGTTTCTGTAGCACGCTGAAGACTGCGACTCTCACTCTTGTTCTCGTGGCGTTGCTCATTGTAGCACTTTCATCAACTGACTCTGCCCTCAGCTATTTGTTGGCTTTGATTCTCCGGAGAAAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SecE

Protein Analysis

158

Amino Acids

17.29

Weight (kDa)

9.33

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38490
fragaria_vesca	FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660
malus_domestica	MD10G1127900.v1.1 MD10G1128000.v1.1
prunus_persica	Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1
pyrus_communis	pycom10g10960
rosa_chinensis	RchiOBHm_Chr6g0278901 RchiOBHm_Chr6g0278921 RchiOBHm_Chr6g0278961
rosa_multiflora	Rmu_sc0000309.1_g000056 Rmu_sc0009618.1_g000001 Rmu_sc0009618.1_g000014
rosa_roxburghii	Rroxscaffold_7G00189310 Rroxscaffold_7G00189390 Rroxscaffold_7G00189530
rosa_rugosa	Rorug06G0120200 Rorug06G0120400 Rorug06G0120500 Rorug06G0120500
rosa_samantha	Rh6AG229100 Rh6BG234300 Rh6CG236500 Rh6DG227800 Rh6DG228100
rosa_wichuraiana	Rw6G020050 Rw6G020060 Rw6G020170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AccIII	TCCGGA	1 cut(s)	462
AciI	CCGC	1 cut(s)	5
AcoI	YGGCCR	1 cut(s)	344
AcuI	CTGAAG	2 cut(s)	350, 386
AfaI	GTAC	1 cut(s)	237
AflIII	ACRYGT	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	268, 341
AjnI	CCWGG	2 cut(s)	52, 346
AluBI	AGCT	3 cut(s)	62, 328, 441
AluI	AGCT	3 cut(s)	62, 328, 441
Aor13HI	TCCGGA	1 cut(s)	462
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	2 cut(s)	188, 316
AseI	ATTAAT	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	87
AvaII	GGWCC	1 cut(s)	87
AxyI	CCTNAGG	1 cut(s)	240
BalI	TGGCCA	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	249
BauI	CACGAG	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	374
BbvCI	CCTCAGC	1 cut(s)	437
BbvI	GCAGC	2 cut(s)	175, 328
BccI	CCATC	1 cut(s)	224
BciT130I	CCWGG	2 cut(s)	54, 348
BfmI	CTRYAG	1 cut(s)	355
BisI	GCNGC	3 cut(s)	6, 189, 317
BlsI	GCNGC	3 cut(s)	7, 190, 318
Bme1390I	CCNGG	2 cut(s)	54, 348
Bme18I	GGWCC	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	3 cut(s)	88, 178, 246
BmrFI	CCNGG	2 cut(s)	54, 348
BpiI	GAAGAC	1 cut(s)	374
Bpu10I	CCTNAGC	1 cut(s)	437
BpuEI	CTTGAG	1 cut(s)	332
BsaBI	GATNNNNATC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	21, 53
BsaWI	WCCGGW	1 cut(s)	462
Bse21I	CCTNAGG	1 cut(s)	240
Bse8I	GATNNNNATC	1 cut(s)	210
BseAI	TCCGGA	1 cut(s)	462
BseBI	CCWGG	2 cut(s)	54, 348
BseDI	CCNNGG	2 cut(s)	21, 53
BseGI	GGATG	1 cut(s)	49
BseJI	GATNNNNATC	1 cut(s)	210
BseMII	CTCAG	2 cut(s)	254, 451
BseXI	GCAGC	2 cut(s)	175, 328
BshFI	GGCC	1 cut(s)	346
BshNI	GGYRCC	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	463
BslFI	GGGAC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp13I	TCCGGA	1 cut(s)	462
Bsp143I	GATC	3 cut(s)	93, 205, 290
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	2 cut(s)	253, 450
BspEI	TCCGGA	1 cut(s)	462
BspLI	GGNNCC	3 cut(s)	88, 178, 246
BspT107I	GGYRCC	1 cut(s)	176
BssECI	CCNNGG	2 cut(s)	21, 53
BssMI	GATC	3 cut(s)	93, 205, 290
BssSI	CACGAG	1 cut(s)	392
Bst2BI	CACGAG	1 cut(s)	392
Bst2UI	CCWGG	2 cut(s)	54, 348
Bst4CI	ACNGT	1 cut(s)	277
BstC8I	GCNNGC	2 cut(s)	60, 362
BstDEI	CTNAG	3 cut(s)	240, 257, 437
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	3 cut(s)	96, 208, 293
BstMBI	GATC	3 cut(s)	93, 205, 290
BstMWI	GCNNNNNNNGC	2 cut(s)	316, 325
BstNI	CCWGG	2 cut(s)	54, 348
BstNSI	RCATGY	1 cut(s)	126
BstSCI	CCNGG	2 cut(s)	52, 346
BstSFI	CTRYAG	1 cut(s)	355
BstV1I	GCAGC	2 cut(s)	175, 328
BstV2I	GAAGAC	1 cut(s)	374
Bsu36I	CCTNAGG	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	346
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	2 cut(s)	60, 362
Cfr13I	GGNCC	1 cut(s)	87
CseI	GACGC	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	1 cut(s)	123
CviJI	RGCY	9 cut(s)	8, 62, 161, 247, 319, 328, 346, 441, 452
CviKI_1	RGCY	9 cut(s)	8, 62, 161, 247, 319, 328, 346, 441, 452
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	3 cut(s)	240, 257, 437
DpnI	GATC	3 cut(s)	95, 207, 292
DpnII	GATC	3 cut(s)	93, 205, 290
EaeI	YGGCCR	1 cut(s)	344
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	87
Eco57I	CTGAAG	2 cut(s)	350, 386
Eco81I	CCTNAGG	1 cut(s)	240
EcoRII	CCWGG	2 cut(s)	52, 346
EcoT38I	GRGCYC	1 cut(s)	249
FaeI	CATG	1 cut(s)	126
FaiI	YATR	7 cut(s)	81, 124, 166, 184, 186, 336, 475
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	1 cut(s)	122
FauNDI	CATATG	1 cut(s)	184
Fnu4HI	GCNGC	3 cut(s)	6, 189, 317
FokI	GGATG	1 cut(s)	36
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	3 cut(s)	6, 189, 317
GluI	GCNGC	3 cut(s)	6, 189, 317
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	1 cut(s)	463
HgaI	GACGC	1 cut(s)	180
Hin1II	CATG	1 cut(s)	126
HinfI	GANTC	5 cut(s)	133, 322, 376, 428, 457
HpaII	CCGG	1 cut(s)	463
Hpy188III	TCNNGA	2 cut(s)	242, 463
HpyAV	CCTTC	3 cut(s)	123, 259, 263
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4V	TGCA	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	2 cut(s)	316, 325
HpyF3I	CTNAG	3 cut(s)	240, 257, 437
Hsp92II	CATG	1 cut(s)	126
Kpn2I	TCCGGA	1 cut(s)	462
Kzo9I	GATC	3 cut(s)	93, 205, 290
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	8 cut(s)	21, 39, 43, 66, 129, 227, 333, 360
Lsp1109I	GCAGC	2 cut(s)	175, 328
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	3 cut(s)	95, 207, 292
MboI	GATC	3 cut(s)	93, 205, 290
MboII	GAAGA	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	249
MlsI	TGGCCA	1 cut(s)	346
MluNI	TGGCCA	1 cut(s)	346
MlyI	GAGTC	4 cut(s)	127, 331, 370, 422
MnlI	CCTC	2 cut(s)	249, 446
Mox20I	TGGCCA	1 cut(s)	346
MroI	TCCGGA	1 cut(s)	462
MscI	TGGCCA	1 cut(s)	346
MseI	TTAA	1 cut(s)	45
Msp20I	TGGCCA	1 cut(s)	346
MspA1I	CMGCKG	1 cut(s)	328
MspI	CCGG	1 cut(s)	463
MspR9I	CCNGG	2 cut(s)	54, 348
MvaI	CCWGG	2 cut(s)	54, 348
MwoI	GCNNNNNNNGC	2 cut(s)	316, 325
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	3 cut(s)	93, 205, 290
NlaIII	CATG	1 cut(s)	126
NlaIV	GGNNCC	3 cut(s)	88, 178, 246
NmeAIII	GCCGAG	1 cut(s)	345
NspI	RCATGY	1 cut(s)	126
PciI	ACATGT	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	457
PkrI	GCNGC	3 cut(s)	7, 190, 318
PleI	GAGTC	4 cut(s)	127, 330, 370, 422
PpsI	GAGTC	4 cut(s)	127, 330, 370, 422
PscI	ACATGT	1 cut(s)	122
PshBI	ATTAAT	1 cut(s)	45
Psp6I	CCWGG	2 cut(s)	52, 346
PspGI	CCWGG	2 cut(s)	52, 346
PspN4I	GGNNCC	3 cut(s)	88, 178, 246
PspPI	GGNCC	1 cut(s)	87
PvuII	CAGCTG	1 cut(s)	328
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	3 cut(s)	6, 189, 317
Sau3AI	GATC	3 cut(s)	93, 205, 290
Sau96I	GGNCC	1 cut(s)	87
SchI	GAGTC	4 cut(s)	127, 331, 370, 422
ScrFI	CCNGG	2 cut(s)	54, 348
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	7 cut(s)	32, 40, 64, 241, 330, 352, 443
SfcI	CTRYAG	1 cut(s)	355
SinI	GGWCC	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SsiI	CCGC	1 cut(s)	5
StyD4I	CCNGG	2 cut(s)	52, 346
TaaI	ACNGT	1 cut(s)	277
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	1 cut(s)	282
TseI	GCWGC	2 cut(s)	188, 316
TspDTI	ATGAA	1 cut(s)	408
TspGWI	ACGGA	1 cut(s)	10
TspRI	CASTG	1 cut(s)	282
VpaK11BI	GGWCC	1 cut(s)	87
VspI	ATTAAT	1 cut(s)	45
XceI	RCATGY	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.