AT4G38490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003022
Physical Location & Seq
Forward (+)
18006288 .. 18007372
1085 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38490.1

Sequence Viewer

Length: 462 bp
ATGGTGGTTTCTCCGGGGCTGCTCTCAACTGTTTCAGGCGTAATCCGATTGGCTCCGTCACACCGGATTCTAAGACGCGATGGGTTCGGACCCATTTGCTTCAAGTTTTCTGGGGATTTGAGTATCAATGGGAGAGTCAGTCATAAACATGTGCGTGGAAGTGGCACGGTGGGATCTGTAGGTTCCGCTCGTGAAAGTTGGAGCTCTCATAAGAAGCTTCCCGAAGAAGAGCCCTTATGGCTGAGTCTTCTTAGAGACATGGTCTGGAGCACGAGATCTCTCTTGTCTTTCATGGCTGAGCAACCAAGTCAGCTGAAATACATAGAGTGGCCAACTTTTGCAAGCACGCTAAAGACTGCTACACTGAGTCTGTGTCTGGTAGCTGTATTCATTGTTGCGCTATCATCGGTGGATGCTGCTCTTTGTTACATATTGGCGTTGATCTTGAGGAAAGCCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SecE

Protein Analysis

153

Amino Acids

16.72

Weight (kDa)

9.78

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 188
AccII CGCG 1 cut(s) 78
AciI CCGC 1 cut(s) 186
AclWI GGATC 1 cut(s) 181
AcoI YGGCCR 1 cut(s) 329
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 1 cut(s) 103
AluBI AGCT 4 cut(s) 204, 217, 313, 383
AluI AGCT 4 cut(s) 204, 217, 313, 383
Alw21I GWGCWC 2 cut(s) 206, 272
Alw26I GTCTC 1 cut(s) 249
AlwI GGATC 1 cut(s) 181
AoxI GGCC 1 cut(s) 329
ApeKI GCWGC 2 cut(s) 19, 416
AspLEI GCGC 1 cut(s) 400
AspS9I GGNCC 1 cut(s) 89
AsuC2I CCSGG 1 cut(s) 15
AvaII GGWCC 1 cut(s) 89
BalI TGGCCA 1 cut(s) 331
BanII GRGCYC 2 cut(s) 206, 234
BauI CACGAG 2 cut(s) 189, 271
BbsI GAAGAC 1 cut(s) 239
Bbv12I GWGCWC 2 cut(s) 206, 272
BbvI GCAGC 2 cut(s) 6, 403
BccI CCATC 1 cut(s) 74
BcnI CCSGG 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 249
BfmI CTRYAG 1 cut(s) 177
BglI GCCNNNNNGGC 1 cut(s) 238
BglII AGATCT 1 cut(s) 275
BisI GCNGC 2 cut(s) 20, 417
BlpI GCTNAGC 1 cut(s) 297
BlsI GCNGC 2 cut(s) 21, 418
Bme1390I CCNGG 1 cut(s) 15
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 3 cut(s) 54, 91, 184
BmrFI CCNGG 1 cut(s) 15
BmsI GCATC 1 cut(s) 403
BpiI GAAGAC 1 cut(s) 239
BpmI CTGGAG 1 cut(s) 286
Bpu1102I GCTNAGC 1 cut(s) 297
BpuMI CCSGG 1 cut(s) 15
BsaJI CCNNGG 1 cut(s) 14
BsaWI WCCGGW 1 cut(s) 63
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
BseDI CCNNGG 1 cut(s) 14
BseGI GGATG 1 cut(s) 418
BseMII CTCAG 3 cut(s) 233, 288, 356
BseXI GCAGC 2 cut(s) 6, 403
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 1 cut(s) 331
BsiHKAI GWGCWC 2 cut(s) 206, 272
BsiSI CCGG 2 cut(s) 14, 64
BsmAI GTCTC 1 cut(s) 249
BsnI GGCC 1 cut(s) 331
Bsp1286I GDGCHC 3 cut(s) 206, 234, 272
Bsp143I GATC 3 cut(s) 173, 275, 441
Bsp1720I GCTNAGC 1 cut(s) 297
BspACI CCGC 1 cut(s) 186
BspANI GGCC 1 cut(s) 331
BspCNI CTCAG 3 cut(s) 234, 289, 357
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 3 cut(s) 54, 91, 184
BspPI GGATC 1 cut(s) 181
BspQI GCTCTTC 1 cut(s) 222
BsrBI CCGCTC 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 3 cut(s) 173, 275, 441
BssSI CACGAG 2 cut(s) 189, 271
Bst2BI CACGAG 2 cut(s) 189, 271
Bst4CI ACNGT 2 cut(s) 31, 169
Bst6I CTCTTC 1 cut(s) 222
BstC8I GCNNGC 2 cut(s) 343, 347
BstDEI CTNAG 5 cut(s) 71, 242, 251, 297, 365
BstF5I GGATG 1 cut(s) 418
BstFNI CGCG 1 cut(s) 78
BstHHI GCGC 1 cut(s) 400
BstKTI GATC 3 cut(s) 176, 278, 444
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 3 cut(s) 173, 275, 441
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstNSI RCATGY 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 13
BstSFI CTRYAG 1 cut(s) 177
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 2 cut(s) 6, 403
BstV2I GAAGAC 1 cut(s) 239
BstX2I RGATCY 2 cut(s) 173, 275
BstYI RGATCY 2 cut(s) 173, 275
BsuRI GGCC 1 cut(s) 331
BtgZI GCGATG 1 cut(s) 93
BtsCI GGATG 1 cut(s) 418
BtsIMutI CAGTG 1 cut(s) 362
Cac8I GCNNGC 2 cut(s) 343, 347
CfoI GCGC 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 89
CseI GACGC 1 cut(s) 84
CviAII CATG 4 cut(s) 149, 259, 292, 459
DdeI CTNAG 5 cut(s) 71, 242, 251, 297, 365
DpnI GATC 3 cut(s) 175, 277, 443
DpnII GATC 3 cut(s) 173, 275, 441
EaeI YGGCCR 1 cut(s) 329
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Ecl136II GAGCTC 1 cut(s) 204
Eco24I GRGCYC 2 cut(s) 206, 234
Eco47I GGWCC 1 cut(s) 89
Eco53kI GAGCTC 1 cut(s) 204
EcoICRI GAGCTC 1 cut(s) 204
EcoT38I GRGCYC 2 cut(s) 206, 234
FaeI CATG 4 cut(s) 152, 262, 295, 462
FaiI YATR 9 cut(s) 144, 150, 210, 238, 260, 293, 323, 431, 460
FatI CATG 4 cut(s) 148, 258, 291, 458
Fnu4HI GCNGC 2 cut(s) 20, 417
FokI GGATG 1 cut(s) 425
FriOI GRGCYC 2 cut(s) 206, 234
Fsp4HI GCNGC 2 cut(s) 20, 417
GlaI GCGC 1 cut(s) 399
GluI GCNGC 2 cut(s) 20, 417
GsuI CTGGAG 1 cut(s) 286
HaeIII GGCC 1 cut(s) 331
HapII CCGG 2 cut(s) 14, 64
HgaI GACGC 1 cut(s) 84
HhaI GCGC 1 cut(s) 400
Hin1II CATG 4 cut(s) 152, 262, 295, 462
Hin6I GCGC 1 cut(s) 398
HinP1I GCGC 1 cut(s) 398
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 4 cut(s) 67, 135, 244, 367
HpaII CCGG 2 cut(s) 14, 64
Hpy188I TCNGA 2 cut(s) 47, 89
Hpy188III TCNNGA 4 cut(s) 191, 221, 265, 445
HpyCH4III ACNGT 2 cut(s) 31, 169
HpyCH4V TGCA 1 cut(s) 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
HpyF3I CTNAG 5 cut(s) 71, 242, 251, 297, 365
Hsp92II CATG 4 cut(s) 152, 262, 295, 462
HspAI GCGC 1 cut(s) 398
Kzo9I GATC 3 cut(s) 173, 275, 441
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 3 cut(s) 58, 201, 267
LpnPI CCDG 6 cut(s) 21, 27, 77, 96, 250, 362
Lsp1109I GCAGC 2 cut(s) 6, 403
LweI GCATC 1 cut(s) 403
MaeIII GTNAC 2 cut(s) 57, 425
MalI GATC 3 cut(s) 175, 277, 443
MbiI CCGCTC 1 cut(s) 188
MboI GATC 3 cut(s) 173, 275, 441
MboII GAAGA 3 cut(s) 236, 239, 239
MflI RGATCY 2 cut(s) 173, 275
MhlI GDGCHC 3 cut(s) 206, 234, 272
MlsI TGGCCA 1 cut(s) 331
MluNI TGGCCA 1 cut(s) 331
MlyI GAGTC 3 cut(s) 144, 253, 376
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 1 cut(s) 441
Mox20I TGGCCA 1 cut(s) 331
MscI TGGCCA 1 cut(s) 331
MslI CAYNNNNRTG 2 cut(s) 147, 153
Msp20I TGGCCA 1 cut(s) 331
MspA1I CMGCKG 1 cut(s) 313
MspI CCGG 2 cut(s) 14, 64
MspR9I CCNGG 1 cut(s) 15
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 238
NciI CCSGG 1 cut(s) 15
NdeII GATC 3 cut(s) 173, 275, 441
NlaIII CATG 4 cut(s) 152, 262, 295, 462
NlaIV GGNNCC 3 cut(s) 54, 91, 184
NmuCI GTSAC 1 cut(s) 57
NspI RCATGY 1 cut(s) 152
PciI ACATGT 1 cut(s) 148
PciSI GCTCTTC 1 cut(s) 222
PfeI GAWTC 1 cut(s) 67
PflFI GACNNNGTC 1 cut(s) 260
PkrI GCNGC 2 cut(s) 21, 418
PleI GAGTC 3 cut(s) 143, 252, 375
PpsI GAGTC 3 cut(s) 143, 252, 375
PscI ACATGT 1 cut(s) 148
Psp124BI GAGCTC 1 cut(s) 206
PspN4I GGNNCC 3 cut(s) 54, 91, 184
PspPI GGNCC 1 cut(s) 89
PsuI RGATCY 2 cut(s) 173, 275
PsyI GACNNNGTC 1 cut(s) 260
PvuII CAGCTG 1 cut(s) 313
RseI CAYNNNNRTG 2 cut(s) 147, 153
SacI GAGCTC 1 cut(s) 206
SapI GCTCTTC 1 cut(s) 222
SatI GCNGC 2 cut(s) 20, 417
Sau3AI GATC 3 cut(s) 173, 275, 441
Sau96I GGNCC 1 cut(s) 89
SchI GAGTC 3 cut(s) 144, 253, 376
ScrFI CCNGG 1 cut(s) 15
SduI GDGCHC 3 cut(s) 206, 234, 272
SetI ASST 5 cut(s) 184, 206, 219, 315, 385
SfaNI GCATC 1 cut(s) 403
SfcI CTRYAG 1 cut(s) 177
SinI GGWCC 1 cut(s) 89
SmiMI CAYNNNNRTG 2 cut(s) 147, 153
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
SsiI CCGC 1 cut(s) 186
SstI GAGCTC 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 13
TaaI ACNGT 2 cut(s) 31, 169
TfiI GAWTC 1 cut(s) 67
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 1 cut(s) 57
TseI GCWGC 2 cut(s) 19, 416
Tsp45I GTSAC 1 cut(s) 57
TspDTI ATGAA 2 cut(s) 280, 379
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 1 cut(s) 369
Tth111I GACNNNGTC 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 89
XceI RCATGY 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.