Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003022

Physical Location & Seq

Genomic Coordinates Reverse (-)

40896204 .. 40899045

Gene Structure 2842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG228100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTTACTGGGTTTTGAGAATTTATCTTTAAATCACGTGTTTCGTAAGAGGGACCAAGTGAGCTGGATGGCGGCTGTTTCGCAGTCCGTGGCAACCTGTTCAGGTTTGATTAATCATCCAGGGCAAGCTAAACTACCATTTGGACATAACGGGACCAAGATCACTAATCACAATGCCGTTTCTGTAACATGTAGAAGGGGATTAGATGTTTTGGCTGTACGTCGGGTTGGCACCACATATGCTGCGTCTGTGGGAAAGGATTATCATCAATTGAGTGTTGATGATGGAGTACCTCAGGAGCCCTTCCTTCTAAGTCTTTTCAAAGAAACAGTGTGGTCTTTCAGATCATTATTCATTTTTCTGCTTGAGCAGCCGAGTCAGCTGAAGTACATTGAATGGCCAGGTTTCCGTAGCACGTTGTCGTTTTCTTCTTTTTTTTCCCGGATGTTTCCTGGTTACAACGGGCCCGAGACATCAGTCAAGGACTTGAGACCAAAGTTGGGACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SecE

Protein Analysis

169

Amino Acids

18.94

Weight (kDa)

9.59

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38490
fragaria_vesca	FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660
malus_domestica	MD10G1127900.v1.1 MD10G1128000.v1.1
prunus_persica	Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1
pyrus_communis	pycom10g10960
rosa_chinensis	RchiOBHm_Chr6g0278901 RchiOBHm_Chr6g0278921 RchiOBHm_Chr6g0278961
rosa_multiflora	Rmu_sc0000309.1_g000056 Rmu_sc0009618.1_g000001 Rmu_sc0009618.1_g000014
rosa_roxburghii	Rroxscaffold_7G00189310 Rroxscaffold_7G00189390 Rroxscaffold_7G00189530
rosa_rugosa	Rorug06G0120200 Rorug06G0120400 Rorug06G0120500 Rorug06G0120500
rosa_samantha	Rh6AG229100 Rh6BG234300 Rh6CG236500 Rh6DG227800 Rh6DG228100
rosa_wichuraiana	Rw6G020050 Rw6G020060 Rw6G020170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	230
AciI	CCGC	1 cut(s)	71
AcoI	YGGCCR	1 cut(s)	398
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	404
AcvI	CACGTG	1 cut(s)	37
AfaI	GTAC	3 cut(s)	219, 291, 389
AfiI	CCNNNNNNNGG	1 cut(s)	500
AflIII	ACRYGT	2 cut(s)	36, 188
AgsI	TTSAA	2 cut(s)	322, 395
AjnI	CCWGG	3 cut(s)	118, 400, 451
AluBI	AGCT	3 cut(s)	63, 128, 382
AluI	AGCT	3 cut(s)	63, 128, 382
Alw26I	GTCTC	2 cut(s)	464, 484
Ama87I	CYCGRG	1 cut(s)	467
AoxI	GGCC	2 cut(s)	398, 464
ApaI	GGGCCC	1 cut(s)	468
ApeKI	GCWGC	2 cut(s)	242, 370
ApoI	RAATTY	1 cut(s)	19
AseI	ATTAAT	1 cut(s)	111
AspS9I	GGNCC	4 cut(s)	52, 153, 464, 465
AsuC2I	CCSGG	1 cut(s)	442
AvaI	CYCGRG	1 cut(s)	467
AvaII	GGWCC	2 cut(s)	52, 153
AxyI	CCTNAGG	1 cut(s)	294
BaeGI	GKGCMC	1 cut(s)	468
BalI	TGGCCA	1 cut(s)	400
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	2 cut(s)	303, 468
BbrPI	CACGTG	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	229, 382
BccI	CCATC	2 cut(s)	61, 278
BceAI	ACGGC	1 cut(s)	161
BciT130I	CCWGG	3 cut(s)	120, 402, 453
BcnI	CCSGG	1 cut(s)	442
BcoDI	GTCTC	2 cut(s)	464, 484
BfmI	CTRYAG	1 cut(s)	506
BisI	GCNGC	3 cut(s)	72, 243, 371
BlsI	GCNGC	3 cut(s)	73, 244, 372
Bme1390I	CCNGG	4 cut(s)	120, 402, 442, 453
Bme18I	GGWCC	2 cut(s)	52, 153
BmeT110I	CYCGRG	1 cut(s)	467
BmgT120I	GGNCC	4 cut(s)	52, 153, 464, 465
BmiI	GGNNCC	5 cut(s)	53, 154, 232, 300, 466
BmrFI	CCNGG	4 cut(s)	120, 402, 442, 453
BmrI	ACTGGG	1 cut(s)	17
BmuI	ACTGGG	1 cut(s)	17
BoxI	GACNNNNGTC	1 cut(s)	476
BpuEI	CTTGAG	2 cut(s)	386, 508
BpuMI	CCSGG	1 cut(s)	442
BsaAI	YACGTR	1 cut(s)	37
BsaBI	GATNNNNATC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	484
BsaJI	CCNNGG	2 cut(s)	87, 119
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse1I	ACTGG	1 cut(s)	12
Bse21I	CCTNAGG	1 cut(s)	294
Bse8I	GATNNNNATC	1 cut(s)	264
BseBI	CCWGG	3 cut(s)	120, 402, 453
BseDI	CCNNGG	2 cut(s)	87, 119
BseGI	GGATG	3 cut(s)	72, 115, 450
BseJI	GATNNNNATC	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	1 cut(s)	12
BseSI	GKGCMC	1 cut(s)	468
BseXI	GCAGC	2 cut(s)	229, 382
BshFI	GGCC	2 cut(s)	400, 466
BshNI	GGYRCC	1 cut(s)	230
BsiHKCI	CYCGRG	1 cut(s)	467
BsiSI	CCGG	1 cut(s)	442
BslFI	GGGAC	2 cut(s)	65, 166
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	2 cut(s)	464, 484
BsmFI	GGGAC	2 cut(s)	65, 166
BsnI	GGCC	2 cut(s)	400, 466
Bso31I	GGTCTC	1 cut(s)	484
BsoBI	CYCGRG	1 cut(s)	467
Bsp120I	GGGCCC	1 cut(s)	464
Bsp1286I	GDGCHC	2 cut(s)	303, 468
Bsp143I	GATC	2 cut(s)	159, 344
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	2 cut(s)	400, 466
BspCNI	CTCAG	1 cut(s)	307
BspLI	GGNNCC	5 cut(s)	53, 154, 232, 300, 466
BspT107I	GGYRCC	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	484
BsrI	ACTGG	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	87, 119
BssMI	GATC	2 cut(s)	159, 344
Bst2UI	CCWGG	3 cut(s)	120, 402, 453
Bst4CI	ACNGT	2 cut(s)	331, 507
BstBAI	YACGTR	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	2 cut(s)	294, 311
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	3 cut(s)	72, 115, 450
BstKTI	GATC	2 cut(s)	162, 347
BstMAI	GTCTC	2 cut(s)	464, 484
BstMBI	GATC	2 cut(s)	159, 344
BstMWI	GCNNNNNNNGC	2 cut(s)	370, 379
BstNI	CCWGG	3 cut(s)	120, 402, 453
BstNSI	RCATGY	1 cut(s)	192
BstPAI	GACNNNNGTC	1 cut(s)	476
BstSCI	CCNGG	4 cut(s)	118, 400, 440, 451
BstSFI	CTRYAG	1 cut(s)	506
BstSLI	GKGCMC	1 cut(s)	468
BstV1I	GCAGC	2 cut(s)	229, 382
Bsu36I	CCTNAGG	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	400, 466
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	3 cut(s)	72, 115, 450
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	1 cut(s)	126
Cfr13I	GGNCC	4 cut(s)	52, 153, 464, 465
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	3 cut(s)	218, 290, 388
CviAII	CATG	1 cut(s)	189
CviJI	RGCY	9 cut(s)	63, 74, 128, 215, 301, 373, 382, 400, 466
CviKI_1	RGCY	9 cut(s)	63, 74, 128, 215, 301, 373, 382, 400, 466
CviQI	GTAC	3 cut(s)	218, 290, 388
DdeI	CTNAG	2 cut(s)	294, 311
DpnI	GATC	2 cut(s)	161, 346
DpnII	GATC	2 cut(s)	159, 344
DraI	TTTAAA	1 cut(s)	30
EaeI	YGGCCR	1 cut(s)	398
Eco24I	GRGCYC	2 cut(s)	303, 468
Eco31I	GGTCTC	1 cut(s)	484
Eco47I	GGWCC	2 cut(s)	52, 153
Eco57I	CTGAAG	1 cut(s)	404
Eco72I	CACGTG	1 cut(s)	37
Eco81I	CCTNAGG	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	467
EcoRII	CCWGG	3 cut(s)	118, 400, 451
EcoT38I	GRGCYC	2 cut(s)	303, 468
FaeI	CATG	1 cut(s)	192
FaiI	YATR	4 cut(s)	147, 190, 238, 240
FaqI	GGGAC	2 cut(s)	65, 166
FatI	CATG	1 cut(s)	188
FauNDI	CATATG	1 cut(s)	238
Fnu4HI	GCNGC	3 cut(s)	72, 243, 371
FokI	GGATG	3 cut(s)	79, 102, 457
FriOI	GRGCYC	2 cut(s)	303, 468
Fsp4HI	GCNGC	3 cut(s)	72, 243, 371
GluI	GCNGC	3 cut(s)	72, 243, 371
HaeIII	GGCC	2 cut(s)	400, 466
HapII	CCGG	1 cut(s)	442
HgaI	GACGC	1 cut(s)	234
Hin1II	CATG	1 cut(s)	192
HinfI	GANTC	1 cut(s)	376
HpaII	CCGG	1 cut(s)	442
Hpy188I	TCNGA	1 cut(s)	344
Hpy188III	TCNNGA	1 cut(s)	296
Hpy99I	CGWCG	1 cut(s)	225
HpyAV	CCTTC	3 cut(s)	189, 313, 317
HpyCH4III	ACNGT	2 cut(s)	331, 507
HpyCH4IV	ACGT	3 cut(s)	36, 220, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	370, 379
HpyF3I	CTNAG	2 cut(s)	294, 311
HpySE526I	ACGT	3 cut(s)	36, 220, 416
Hsp92II	CATG	1 cut(s)	192
Kzo9I	GATC	2 cut(s)	159, 344
LmnI	GCTCC	1 cut(s)	298
Lsp1109I	GCAGC	2 cut(s)	229, 382
MaeII	ACGT	3 cut(s)	36, 220, 416
MaeIII	GTNAC	3 cut(s)	3, 184, 455
MalI	GATC	2 cut(s)	161, 346
MboI	GATC	2 cut(s)	159, 344
MboII	GAAGA	1 cut(s)	420
MfeI	CAATTG	1 cut(s)	269
MhlI	GDGCHC	2 cut(s)	303, 468
MlsI	TGGCCA	1 cut(s)	400
MluCI	AATT	2 cut(s)	19, 269
MluNI	TGGCCA	1 cut(s)	400
MlyI	GAGTC	1 cut(s)	385
MnlI	CCTC	2 cut(s)	42, 303
Mox20I	TGGCCA	1 cut(s)	400
MscI	TGGCCA	1 cut(s)	400
MseI	TTAA	2 cut(s)	29, 111
Msp20I	TGGCCA	1 cut(s)	400
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	1 cut(s)	442
MspR9I	CCNGG	4 cut(s)	120, 402, 442, 453
MunI	CAATTG	1 cut(s)	269
MvaI	CCWGG	3 cut(s)	120, 402, 453
MwoI	GCNNNNNNNGC	2 cut(s)	370, 379
NciI	CCSGG	1 cut(s)	442
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	2 cut(s)	159, 344
NlaIII	CATG	1 cut(s)	192
NlaIV	GGNNCC	5 cut(s)	53, 154, 232, 300, 466
NmeAIII	GCCGAG	1 cut(s)	399
NspI	RCATGY	1 cut(s)	192
PciI	ACATGT	1 cut(s)	188
PfoI	TCCNGGA	1 cut(s)	440
PkrI	GCNGC	3 cut(s)	73, 244, 372
PleI	GAGTC	1 cut(s)	384
PmaCI	CACGTG	1 cut(s)	37
PmlI	CACGTG	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	384
Ppu21I	YACGTR	1 cut(s)	37
PscI	ACATGT	1 cut(s)	188
PshAI	GACNNNNGTC	1 cut(s)	476
PshBI	ATTAAT	1 cut(s)	111
Psp6I	CCWGG	3 cut(s)	118, 400, 451
PspCI	CACGTG	1 cut(s)	37
PspGI	CCWGG	3 cut(s)	118, 400, 451
PspN4I	GGNNCC	5 cut(s)	53, 154, 232, 300, 466
PspOMI	GGGCCC	1 cut(s)	464
PspPI	GGNCC	4 cut(s)	52, 153, 464, 465
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	3 cut(s)	219, 291, 389
RsaNI	GTAC	3 cut(s)	218, 290, 388
SaqAI	TTAA	2 cut(s)	29, 111
SatI	GCNGC	3 cut(s)	72, 243, 371
Sau3AI	GATC	2 cut(s)	159, 344
Sau96I	GGNCC	4 cut(s)	52, 153, 464, 465
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	4 cut(s)	120, 402, 442, 453
SduI	GDGCHC	2 cut(s)	303, 468
SfcI	CTRYAG	1 cut(s)	506
SinI	GGWCC	2 cut(s)	52, 153
SmlI	CTYRAG	2 cut(s)	365, 487
SmoI	CTYRAG	2 cut(s)	365, 487
Sse9I	AATT	2 cut(s)	19, 269
SsiI	CCGC	1 cut(s)	71
StyD4I	CCNGG	4 cut(s)	118, 400, 440, 451
TaaI	ACNGT	2 cut(s)	331, 507
TaiI	ACGT	3 cut(s)	39, 223, 419
TasI	AATT	2 cut(s)	19, 269
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	1 cut(s)	74
Tru1I	TTAA	2 cut(s)	29, 111
Tru9I	TTAA	2 cut(s)	29, 111
TscAI	CASTG	1 cut(s)	336
TseI	GCWGC	2 cut(s)	242, 370
TspDTI	ATGAA	1 cut(s)	343
TspGWI	ACGGA	2 cut(s)	76, 398
TspRI	CASTG	1 cut(s)	336
VpaK11BI	GGWCC	2 cut(s)	52, 153
VspI	ATTAAT	1 cut(s)	111
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.