Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003022

Physical Location & Seq

Genomic Coordinates Reverse (-)

16552897 .. 16556696

Gene Structure 3800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0120400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGAATCCCGACCCGAACGCACCCTCGGCCGGGTCCTCCAAGGCCGGCCTGAACCGAATCTGGCGCTTATTAGAGTCAAGGGAAGAATTTGCTGATCTTAGAGCCAAGGGTTGCGAGCTTCTGGCATCAGCTTTGTTTCACAACTGGAAATCACTGAGCAAGAGGAAAAAATCAAACAATAGCTTCATCTGTTCACTGTCAAAGATAAATGAAGCTACAGTAAATTTCCTCTCGGTGCTGCAAGAAAGGTATTGCTTCTTCTTACTCTCTGCCTTTTCTCATCTGAGTATTACTTGCTTTTCTGGGTTCGTGCTTATTTGTGGTTTCATGTTGATAAAGAGGTACAAACCAAGACCCATGAGGGCTGAAAGAGGCAATGAGTTGCATAATGGGAAGTTGATTGTGCAGAATTGGGGATTTCGGAGTTGGCCTGATGGGATTCAGTCAATGGCTATCCCACTAAGAGTTAATCTTTATACTGATAAGGCTTCAATGCTGGATGAAGCAGTTGAGTATTTGAAGCAGCTCCAACTTCAAGTACAGAGGGGAGAAAGGAAGAAACAGAAGAAGGGGGAGACGGGAAGGACAAAAGAGGCAGGGAAATCCAAAAGACGAGAAGAACTGCTCTACTTCACAGATTCAAGGATATGTCTGCTGGAACAAGGAACAACCCACATTAACAAGTTTTGGGCCAAAAGCCAAGATAGTGGCAGCATGCCAGCATCCATTCATTTTATGATGTCGGTGCTAATCCACTTGACAAACGAGTATCAATATCAAAATCTGACAAGAGGAGGCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SecE

Protein Analysis

267

Amino Acids

30.6

Weight (kDa)

9.67

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38490
fragaria_vesca	FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660
malus_domestica	MD10G1127900.v1.1 MD10G1128000.v1.1
prunus_persica	Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1
pyrus_communis	pycom10g10960
rosa_chinensis	RchiOBHm_Chr6g0278901 RchiOBHm_Chr6g0278921 RchiOBHm_Chr6g0278961
rosa_multiflora	Rmu_sc0000309.1_g000056 Rmu_sc0009618.1_g000001 Rmu_sc0009618.1_g000014
rosa_roxburghii	Rroxscaffold_7G00189310 Rroxscaffold_7G00189390 Rroxscaffold_7G00189530
rosa_rugosa	Rorug06G0120200 Rorug06G0120400 Rorug06G0120500 Rorug06G0120500
rosa_samantha	Rh6AG229100 Rh6BG234300 Rh6CG236500 Rh6DG227800 Rh6DG228100
rosa_wichuraiana	Rw6G020050 Rw6G020060 Rw6G020170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	2 cut(s)	86, 223
AfaI	GTAC	2 cut(s)	344, 540
AfiI	CCNNNNNNNGG	2 cut(s)	29, 30
AgsI	TTSAA	4 cut(s)	492, 520, 536, 642
AluBI	AGCT	5 cut(s)	118, 131, 183, 215, 526
AluI	AGCT	5 cut(s)	118, 131, 183, 215, 526
Alw26I	GTCTC	1 cut(s)	569
AoxI	GGCC	5 cut(s)	27, 42, 46, 428, 690
ApeKI	GCWGC	3 cut(s)	238, 523, 711
ApoI	RAATTY	2 cut(s)	86, 223
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	2 cut(s)	33, 690
AsuC2I	CCSGG	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	33
BarI	GAAGNNNNNNTAC	2 cut(s)	242, 274
BbvI	GCAGC	3 cut(s)	225, 535, 723
BccI	CCATC	1 cut(s)	428
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	569
BfmI	CTRYAG	1 cut(s)	216
BfoI	RGCGCY	1 cut(s)	67
BisI	GCNGC	3 cut(s)	239, 524, 712
BlsI	GCNGC	3 cut(s)	240, 525, 713
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	2 cut(s)	33, 690
BmiI	GGNNCC	1 cut(s)	34
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	2 cut(s)	134, 731
BpuMI	CCSGG	1 cut(s)	31
BsaJI	CCNNGG	3 cut(s)	24, 39, 105
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 30
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	149
Bse3DI	GCAATG	1 cut(s)	382
BseDI	CCNNGG	3 cut(s)	24, 39, 105
BseGI	GGATG	2 cut(s)	505, 722
BseLI	CCNNNNNNNGG	2 cut(s)	29, 30
BseMI	GCAATG	1 cut(s)	382
BseMII	CTCAG	2 cut(s)	146, 275
BseNI	ACTGG	1 cut(s)	149
BseX3I	CGGCCG	1 cut(s)	27
BseXI	GCAGC	3 cut(s)	225, 535, 723
BsgI	GTGCAG	1 cut(s)	425
Bsh1285I	CGRYCG	1 cut(s)	30
BshFI	GGCC	5 cut(s)	29, 44, 48, 430, 692
BsiEI	CGRYCG	1 cut(s)	30
BsiSI	CCGG	2 cut(s)	30, 45
BslI	CCNNNNNNNGG	2 cut(s)	29, 30
BsmAI	GTCTC	1 cut(s)	569
BsmBI	CGTCTC	1 cut(s)	569
BsnI	GGCC	5 cut(s)	29, 44, 48, 430, 692
Bsp143I	GATC	1 cut(s)	94
BspANI	GGCC	5 cut(s)	29, 44, 48, 430, 692
BspCNI	CTCAG	2 cut(s)	147, 276
BspLI	GGNNCC	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	382
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	3 cut(s)	24, 39, 105
BssMI	GATC	1 cut(s)	94
BssT1I	CCWWGG	2 cut(s)	39, 105
Bst4CI	ACNGT	2 cut(s)	198, 220
BstC8I	GCNNGC	4 cut(s)	46, 116, 716, 720
BstDEI	CTNAG	4 cut(s)	98, 155, 284, 461
BstF5I	GGATG	2 cut(s)	505, 722
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	1 cut(s)	569
BstMBI	GATC	1 cut(s)	94
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	718
BstSCI	CCNGG	1 cut(s)	29
BstSFI	CTRYAG	1 cut(s)	216
BstV1I	GCAGC	3 cut(s)	225, 535, 723
BstXI	CCANNNNNNTGG	1 cut(s)	707
BstZI	CGGCCG	1 cut(s)	27
BsuRI	GGCC	5 cut(s)	29, 44, 48, 430, 692
BtsCI	GGATG	2 cut(s)	505, 722
BtsIMutI	CAGTG	2 cut(s)	152, 194
Cac8I	GCNNGC	4 cut(s)	46, 116, 716, 720
CfoI	GCGC	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	33, 690
Csp6I	GTAC	2 cut(s)	343, 539
CviAII	CATG	3 cut(s)	328, 358, 715
CviQI	GTAC	2 cut(s)	343, 539
DdeI	CTNAG	4 cut(s)	98, 155, 284, 461
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
EaeI	YGGCCR	1 cut(s)	27
EagI	CGGCCG	1 cut(s)	27
EclXI	CGGCCG	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	39, 105
Eco47I	GGWCC	1 cut(s)	33
Eco52I	CGGCCG	1 cut(s)	27
EcoO109I	RGGNCCY	1 cut(s)	33
EcoT14I	CCWWGG	2 cut(s)	39, 105
ErhI	CCWWGG	2 cut(s)	39, 105
Esp3I	CGTCTC	1 cut(s)	569
FaeI	CATG	3 cut(s)	331, 361, 718
FaiI	YATR	7 cut(s)	329, 359, 387, 477, 649, 716, 737
FatI	CATG	3 cut(s)	327, 357, 714
Fnu4HI	GCNGC	3 cut(s)	239, 524, 712
FokI	GGATG	2 cut(s)	512, 709
FseI	GGCCGGCC	1 cut(s)	48
Fsp4HI	GCNGC	3 cut(s)	239, 524, 712
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	3 cut(s)	239, 524, 712
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	5 cut(s)	29, 44, 48, 430, 692
HapII	CCGG	2 cut(s)	30, 45
HhaI	GCGC	1 cut(s)	66
Hin1II	CATG	3 cut(s)	331, 361, 718
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HinfI	GANTC	5 cut(s)	4, 57, 74, 439, 638
HpaII	CCGG	2 cut(s)	30, 45
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	3 cut(s)	285, 423, 786
Hpy188III	TCNNGA	1 cut(s)	8
Hpy8I	GTNNAC	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	562, 576
HpyCH4III	ACNGT	2 cut(s)	198, 220
HpyCH4V	TGCA	3 cut(s)	241, 385, 406
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	4 cut(s)	98, 155, 284, 461
Hsp92II	CATG	3 cut(s)	331, 361, 718
HspAI	GCGC	1 cut(s)	64
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Kzo9I	GATC	1 cut(s)	94
LmnI	GCTCC	1 cut(s)	531
Lsp1109I	GCAGC	3 cut(s)	225, 535, 723
LweI	GCATC	2 cut(s)	134, 731
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	5 cut(s)	95, 250, 568, 577, 629
MluCI	AATT	3 cut(s)	86, 223, 409
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	1 cut(s)	553
MroNI	GCCGGC	1 cut(s)	44
MseI	TTAA	3 cut(s)	468, 678, 802
MspI	CCGG	2 cut(s)	30, 45
MspR9I	CCNGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	26
NaeI	GCCGGC	1 cut(s)	46
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	1 cut(s)	94
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	3 cut(s)	331, 361, 718
NlaIV	GGNNCC	1 cut(s)	34
NmeAIII	GCCGAG	1 cut(s)	5
NspI	RCATGY	1 cut(s)	718
PaeI	GCATGC	1 cut(s)	718
PdiI	GCCGGC	1 cut(s)	46
PfeI	GAWTC	4 cut(s)	4, 57, 439, 638
PkrI	GCNGC	3 cut(s)	240, 525, 713
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
PpuMI	RGGWCCY	1 cut(s)	33
Psp5II	RGGWCCY	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	2 cut(s)	33, 690
PspPPI	RGGWCCY	1 cut(s)	33
RigI	GGCCGGCC	1 cut(s)	48
RsaI	GTAC	2 cut(s)	344, 540
RsaNI	GTAC	2 cut(s)	343, 539
SaqAI	TTAA	3 cut(s)	468, 678, 802
SatI	GCNGC	3 cut(s)	239, 524, 712
Sau3AI	GATC	1 cut(s)	94
Sau96I	GGNCC	2 cut(s)	33, 690
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	31
SetI	ASST	7 cut(s)	120, 133, 185, 217, 251, 344, 528
SfaNI	GCATC	2 cut(s)	134, 731
SfcI	CTRYAG	1 cut(s)	216
SinI	GGWCC	1 cut(s)	33
SphI	GCATGC	1 cut(s)	718
Sse9I	AATT	3 cut(s)	86, 223, 409
StyD4I	CCNGG	1 cut(s)	29
StyI	CCWWGG	2 cut(s)	39, 105
TaaI	ACNGT	2 cut(s)	198, 220
TasI	AATT	3 cut(s)	86, 223, 409
TatI	WGTACW	1 cut(s)	538
TfiI	GAWTC	4 cut(s)	4, 57, 439, 638
Tru1I	TTAA	3 cut(s)	468, 678, 802
Tru9I	TTAA	3 cut(s)	468, 678, 802
TscAI	CASTG	2 cut(s)	159, 201
TseI	GCWGC	3 cut(s)	238, 523, 711
TspDTI	ATGAA	6 cut(s)	17, 175, 225, 316, 516, 719
TspRI	CASTG	2 cut(s)	159, 201
VpaK11BI	GGWCC	1 cut(s)	33
XapI	RAATTY	2 cut(s)	86, 223
XceI	RCATGY	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.