Rmu_sc0009618.1_g000014

SecE/Sec61-gamma subunits of protein translocation complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009618.1
OG0003022
Physical Location & Seq
Reverse (-)
63631 .. 64091
461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009618.1_g000014.1.cds

Sequence Viewer

Length: 285 bp
atggcggctgtttcgcagtccgtggcaacctgttcaggtttgattaatcatccagggcatgctaaactaccatttggacataatgggaccaagatcactaatcataatgccgtttcagtaacatgtagaaggactcgtagggcagggattagatgtttggctgtacgtcgggttggcaccacatatgctgcgtctgtgggaaaggatcattatcagttgagtgttgatgatggagtacctcaggagcccttccttctaagtcttttcaaagaaacagcgtggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SecE

Protein Analysis

94

Amino Acids

10.15

Weight (kDa)

9.81

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 213
AfaI GTAC 2 cut(s) 165, 237
AflIII ACRYGT 1 cut(s) 122
AgsI TTSAA 1 cut(s) 268
AjnI CCWGG 1 cut(s) 52
AlwI GGATC 1 cut(s) 213
ApeKI GCWGC 1 cut(s) 188
AseI ATTAAT 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 87
AvaII GGWCC 1 cut(s) 87
AxyI CCTNAGG 1 cut(s) 240
BanI GGYRCC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 175
BccI CCATC 1 cut(s) 224
BceAI ACGGC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 54
BisI GCNGC 2 cut(s) 6, 189
BlsI GCNGC 2 cut(s) 7, 190
Bme1390I CCNGG 1 cut(s) 54
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 3 cut(s) 88, 178, 246
BmrFI CCNGG 1 cut(s) 54
BsaBI GATNNNNATC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 21, 53
Bse21I CCTNAGG 1 cut(s) 240
Bse8I GATNNNNATC 1 cut(s) 210
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 2 cut(s) 21, 53
BseGI GGATG 1 cut(s) 49
BseJI GATNNNNATC 1 cut(s) 210
BseMII CTCAG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 175
BshNI GGYRCC 1 cut(s) 176
BslFI GGGAC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 2 cut(s) 93, 205
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 3 cut(s) 88, 178, 246
BspPI GGATC 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 176
BssECI CCNNGG 2 cut(s) 21, 53
BssMI GATC 2 cut(s) 93, 205
Bst2UI CCWGG 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 2 cut(s) 240, 257
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 2 cut(s) 96, 208
BstMBI GATC 2 cut(s) 93, 205
BstNI CCWGG 1 cut(s) 54
BstNSI RCATGY 2 cut(s) 62, 126
BstSCI CCNGG 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 175
Bsu36I CCTNAGG 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 49
Cac8I GCNNGC 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 87
CseI GACGC 1 cut(s) 180
Csp6I GTAC 2 cut(s) 164, 236
CviAII CATG 2 cut(s) 59, 123
CviJI RGCY 3 cut(s) 8, 161, 247
CviKI_1 RGCY 3 cut(s) 8, 161, 247
CviQI GTAC 2 cut(s) 164, 236
DdeI CTNAG 2 cut(s) 240, 257
DpnI GATC 2 cut(s) 95, 207
DpnII GATC 2 cut(s) 93, 205
Eco24I GRGCYC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 87
Eco81I CCTNAGG 1 cut(s) 240
EcoRII CCWGG 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 249
FaeI CATG 2 cut(s) 62, 126
FaiI YATR 6 cut(s) 60, 81, 105, 124, 184, 186
FaqI GGGAC 1 cut(s) 100
FatI CATG 2 cut(s) 58, 122
FauNDI CATATG 1 cut(s) 184
Fnu4HI GCNGC 2 cut(s) 6, 189
FokI GGATG 1 cut(s) 36
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 2 cut(s) 6, 189
GluI GCNGC 2 cut(s) 6, 189
HgaI GACGC 1 cut(s) 180
Hin1II CATG 2 cut(s) 62, 126
HinfI GANTC 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 242
Hpy99I CGWCG 1 cut(s) 171
HpyAV CCTTC 3 cut(s) 123, 259, 263
HpyCH4IV ACGT 1 cut(s) 166
HpyF3I CTNAG 2 cut(s) 240, 257
HpySE526I ACGT 1 cut(s) 166
Hsp92II CATG 2 cut(s) 62, 126
Kzo9I GATC 2 cut(s) 93, 205
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 6 cut(s) 21, 39, 43, 66, 129, 227
Lsp1109I GCAGC 1 cut(s) 175
MaeII ACGT 1 cut(s) 166
MaeIII GTNAC 1 cut(s) 118
MalI GATC 2 cut(s) 95, 207
MboI GATC 2 cut(s) 93, 205
MhlI GDGCHC 1 cut(s) 249
MlyI GAGTC 1 cut(s) 127
MnlI CCTC 1 cut(s) 249
MseI TTAA 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 54
NdeI CATATG 1 cut(s) 184
NdeII GATC 2 cut(s) 93, 205
NlaIII CATG 2 cut(s) 62, 126
NlaIV GGNNCC 3 cut(s) 88, 178, 246
NspI RCATGY 2 cut(s) 62, 126
PaeI GCATGC 1 cut(s) 62
PciI ACATGT 1 cut(s) 122
PkrI GCNGC 2 cut(s) 7, 190
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
PscI ACATGT 1 cut(s) 122
PshBI ATTAAT 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 52
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 3 cut(s) 88, 178, 246
PspPI GGNCC 1 cut(s) 87
RsaI GTAC 2 cut(s) 165, 237
RsaNI GTAC 2 cut(s) 164, 236
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 2 cut(s) 6, 189
Sau3AI GATC 2 cut(s) 93, 205
Sau96I GGNCC 1 cut(s) 87
SchI GAGTC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 54
SduI GDGCHC 1 cut(s) 249
SetI ASST 4 cut(s) 32, 40, 169, 241
SinI GGWCC 1 cut(s) 87
SphI GCATGC 1 cut(s) 62
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 1 cut(s) 52
TaiI ACGT 1 cut(s) 169
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseI GCWGC 1 cut(s) 188
TspGWI ACGGA 1 cut(s) 10
VpaK11BI GGWCC 1 cut(s) 87
VspI ATTAAT 1 cut(s) 45
XceI RCATGY 2 cut(s) 62, 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.