RchiOBHm_Chr6g0278901

SecE/Sec61-gamma subunits of protein translocation complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003022
Physical Location & Seq
Reverse (-)
42008288 .. 42011357
3070 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25017

Sequence Viewer

Length: 477 bp
ATGGCGGCTGTTTTGCAGTCCGTGGCAACATGTTCAGGTTTGATTCATCATCCAGGTAGTGCTAAACTACCATTTGGGAATAAGGGGACCAAGATTACTAATCACAGTGCCGTTTCAGTAACATGTAGAAGGACTCGTAGAGCAGGGATTCAATGTTTGGCTGTACATCGGGTTGGCACCACATATGCTGCGTCTGTGGGAAAGGATCATCAGCAGTTGAGTATTGATGATGGAGTACCTCAGGAGCCCTTCCTTCTGAGTCTTTTCAAAGAAATAGTGTGGTCTTTGAGATCATTATTCATTTTTCTGCTTGAGCAGCCAAGTCAGCTGAAGTACATTGAATGGCCAGGTTTCCGTAGTACGCTGAAGACTGCGATTCTCACTCTTGTTCTTGTGGCATTGCTCATTGTAGCACTTTCATCAACTGACTCTGCCCTCAGCTATTTGTTGGCTTTGATTCTCAGGAGTAAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SecE

Protein Analysis

158

Amino Acids

17.2

Weight (kDa)

9.82

Isoelectric Point (pI)

50.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SecE PF00584 102 - 154 9.4e-07 SecE/Sec61-gamma subunits of protein translocation complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 213
AcoI YGGCCR 1 cut(s) 344
AcuI CTGAAG 2 cut(s) 350, 386
AfaI GTAC 4 cut(s) 165, 237, 335, 361
AflIII ACRYGT 2 cut(s) 29, 122
AgsI TTSAA 3 cut(s) 152, 268, 341
AjnI CCWGG 2 cut(s) 52, 346
AluBI AGCT 2 cut(s) 328, 441
AluI AGCT 2 cut(s) 328, 441
AlwI GGATC 1 cut(s) 213
AoxI GGCC 1 cut(s) 344
ApeKI GCWGC 2 cut(s) 188, 316
AspS9I GGNCC 1 cut(s) 87
AvaII GGWCC 1 cut(s) 87
AxyI CCTNAGG 1 cut(s) 240
BalI TGGCCA 1 cut(s) 346
BanI GGYRCC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 374
BbvCI CCTCAGC 1 cut(s) 437
BbvI GCAGC 2 cut(s) 175, 328
BccI CCATC 1 cut(s) 224
BceAI ACGGC 1 cut(s) 95
BciT130I CCWGG 2 cut(s) 54, 348
BisI GCNGC 3 cut(s) 6, 189, 317
BlsI GCNGC 3 cut(s) 7, 190, 318
Bme1390I CCNGG 2 cut(s) 54, 348
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 3 cut(s) 88, 178, 246
BmrFI CCNGG 2 cut(s) 54, 348
BpiI GAAGAC 1 cut(s) 374
Bpu10I CCTNAGC 1 cut(s) 437
BpuEI CTTGAG 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 21
Bse21I CCTNAGG 1 cut(s) 240
Bse3DI GCAATG 1 cut(s) 398
BseBI CCWGG 2 cut(s) 54, 348
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 49
BseMI GCAATG 1 cut(s) 398
BseMII CTCAG 4 cut(s) 248, 254, 451, 475
BseXI GCAGC 2 cut(s) 175, 328
BshFI GGCC 1 cut(s) 346
BshNI GGYRCC 1 cut(s) 176
BslFI GGGAC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 100
BsnI GGCC 1 cut(s) 346
Bsp1286I GDGCHC 1 cut(s) 249
Bsp1407I TGTACA 1 cut(s) 163
Bsp143I GATC 2 cut(s) 205, 290
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 346
BspCNI CTCAG 4 cut(s) 249, 253, 450, 474
BspLI GGNNCC 3 cut(s) 88, 178, 246
BspPI GGATC 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 398
BsrGI TGTACA 1 cut(s) 163
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 2 cut(s) 205, 290
Bst2UI CCWGG 2 cut(s) 54, 348
Bst4CI ACNGT 1 cut(s) 107
BstAUI TGTACA 1 cut(s) 163
BstDEI CTNAG 4 cut(s) 240, 257, 437, 461
BstDSI CCRYGG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 2 cut(s) 208, 293
BstMBI GATC 2 cut(s) 205, 290
BstMWI GCNNNNNNNGC 2 cut(s) 316, 325
BstNI CCWGG 2 cut(s) 54, 348
BstNSI RCATGY 2 cut(s) 33, 126
BstSCI CCNGG 2 cut(s) 52, 346
BstV1I GCAGC 2 cut(s) 175, 328
BstV2I GAAGAC 1 cut(s) 374
Bsu36I CCTNAGG 1 cut(s) 240
BsuRI GGCC 1 cut(s) 346
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 49
BtsIMutI CAGTG 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 87
CseI GACGC 1 cut(s) 180
Csp6I GTAC 4 cut(s) 164, 236, 334, 360
CviAII CATG 2 cut(s) 30, 123
CviJI RGCY 8 cut(s) 8, 161, 247, 319, 328, 346, 441, 452
CviKI_1 RGCY 8 cut(s) 8, 161, 247, 319, 328, 346, 441, 452
CviQI GTAC 4 cut(s) 164, 236, 334, 360
DdeI CTNAG 4 cut(s) 240, 257, 437, 461
DpnI GATC 2 cut(s) 207, 292
DpnII GATC 2 cut(s) 205, 290
EaeI YGGCCR 1 cut(s) 344
Eco24I GRGCYC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 87
Eco57I CTGAAG 2 cut(s) 350, 386
Eco81I CCTNAGG 1 cut(s) 240
EcoRII CCWGG 2 cut(s) 52, 346
EcoT38I GRGCYC 1 cut(s) 249
FaeI CATG 2 cut(s) 33, 126
FaiI YATR 5 cut(s) 31, 124, 184, 186, 475
FaqI GGGAC 1 cut(s) 100
FatI CATG 2 cut(s) 29, 122
FauNDI CATATG 1 cut(s) 184
Fnu4HI GCNGC 3 cut(s) 6, 189, 317
FokI GGATG 1 cut(s) 36
FriOI GRGCYC 1 cut(s) 249
Fsp4HI GCNGC 3 cut(s) 6, 189, 317
GluI GCNGC 3 cut(s) 6, 189, 317
HaeIII GGCC 1 cut(s) 346
HgaI GACGC 1 cut(s) 180
Hin1II CATG 2 cut(s) 33, 126
HinfI GANTC 7 cut(s) 43, 133, 148, 259, 376, 428, 457
Hpy166II GTNNAC 1 cut(s) 470
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 2 cut(s) 242, 463
Hpy8I GTNNAC 1 cut(s) 470
HpyAV CCTTC 3 cut(s) 123, 259, 263
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4V TGCA 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 2 cut(s) 316, 325
HpyF3I CTNAG 4 cut(s) 240, 257, 437, 461
Hsp92II CATG 2 cut(s) 33, 126
Kzo9I GATC 2 cut(s) 205, 290
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 8 cut(s) 21, 39, 66, 129, 227, 333, 360, 448
Lsp1109I GCAGC 2 cut(s) 175, 328
MaeIII GTNAC 1 cut(s) 118
MalI GATC 2 cut(s) 207, 292
MboI GATC 2 cut(s) 205, 290
MboII GAAGA 1 cut(s) 379
MhlI GDGCHC 1 cut(s) 249
MlsI TGGCCA 1 cut(s) 346
MluNI TGGCCA 1 cut(s) 346
MlyI GAGTC 3 cut(s) 127, 268, 422
MnlI CCTC 2 cut(s) 249, 446
Mox20I TGGCCA 1 cut(s) 346
MscI TGGCCA 1 cut(s) 346
Msp20I TGGCCA 1 cut(s) 346
MspA1I CMGCKG 1 cut(s) 328
MspR9I CCNGG 2 cut(s) 54, 348
MvaI CCWGG 2 cut(s) 54, 348
MwoI GCNNNNNNNGC 2 cut(s) 316, 325
NdeI CATATG 1 cut(s) 184
NdeII GATC 2 cut(s) 205, 290
NlaIII CATG 2 cut(s) 33, 126
NlaIV GGNNCC 3 cut(s) 88, 178, 246
NspI RCATGY 2 cut(s) 33, 126
PciI ACATGT 2 cut(s) 29, 122
PfeI GAWTC 4 cut(s) 43, 148, 376, 457
PkrI GCNGC 3 cut(s) 7, 190, 318
PleI GAGTC 3 cut(s) 127, 267, 422
PpsI GAGTC 3 cut(s) 127, 267, 422
PscI ACATGT 2 cut(s) 29, 122
Psp6I CCWGG 2 cut(s) 52, 346
PspGI CCWGG 2 cut(s) 52, 346
PspN4I GGNNCC 3 cut(s) 88, 178, 246
PspPI GGNCC 1 cut(s) 87
PvuII CAGCTG 1 cut(s) 328
RsaI GTAC 4 cut(s) 165, 237, 335, 361
RsaNI GTAC 4 cut(s) 164, 236, 334, 360
SatI GCNGC 3 cut(s) 6, 189, 317
Sau3AI GATC 2 cut(s) 205, 290
Sau96I GGNCC 1 cut(s) 87
SchI GAGTC 3 cut(s) 127, 268, 422
ScrFI CCNGG 2 cut(s) 54, 348
SduI GDGCHC 1 cut(s) 249
SetI ASST 6 cut(s) 40, 58, 241, 330, 352, 443
SinI GGWCC 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 2 cut(s) 52, 346
TaaI ACNGT 1 cut(s) 107
TatI WGTACW 2 cut(s) 163, 333
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 4 cut(s) 43, 148, 376, 457
TscAI CASTG 1 cut(s) 112
TseI GCWGC 2 cut(s) 188, 316
TspDTI ATGAA 3 cut(s) 35, 289, 408
TspGWI ACGGA 2 cut(s) 10, 344
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 1 cut(s) 87
XceI RCATGY 2 cut(s) 33, 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.