Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003022

Physical Location & Seq

Genomic Coordinates Reverse (-)

40137864 .. 40140618

Gene Structure 2755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G020060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAAACCCACTGAGCATAAAATGATGGCGGCTGTTTCGCAGTCCGTGGCAACCTGTTCAGGTTTGATTAATCATCCAGGGCAAGCTAAACTACCATTTGGACATAACGGGACCAAGATCACTAATCACAATGCCGTTTCAGTAACATGTAGAAGGACTCGTAGGGCAGGGATTACATGTTTGGCTGTATGTCGGGTTGGCACCACATATGCTGCGTCTGTGGGAAAGGATTATCATCAATTGAGTGTTGATGATGGAGTACCTCAGGAACCCTTCCTTCTAAGTCTTTTCAAAGAAACAGTGTGGTCTTTGAGATCATTATTCGTTTTTCTGCTTGAGCAGCCGAGTCAGCTGAAGTATATTGAATGGCCAGGTTTCCATAGCACGACTGCGACTCTCACTCTTGTTCTTGTGGCGTTGCTCATTGTTTCACTTTCATCAAATGACTCTGCCCTCAGCTATTTGTTGGCTTTGATTCTCAGGAGAAAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SecE

Protein Analysis

164

Amino Acids

17.97

Weight (kDa)

9.51

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38490
fragaria_vesca	FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660
malus_domestica	MD10G1127900.v1.1 MD10G1128000.v1.1
prunus_persica	Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1
pyrus_communis	pycom10g10960
rosa_chinensis	RchiOBHm_Chr6g0278901 RchiOBHm_Chr6g0278921 RchiOBHm_Chr6g0278961
rosa_multiflora	Rmu_sc0000309.1_g000056 Rmu_sc0009618.1_g000001 Rmu_sc0009618.1_g000014
rosa_roxburghii	Rroxscaffold_7G00189310 Rroxscaffold_7G00189390 Rroxscaffold_7G00189530
rosa_rugosa	Rorug06G0120200 Rorug06G0120400 Rorug06G0120500 Rorug06G0120500
rosa_samantha	Rh6AG229100 Rh6BG234300 Rh6CG236500 Rh6DG227800 Rh6DG228100
rosa_wichuraiana	Rw6G020050 Rw6G020060 Rw6G020170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AciI	CCGC	1 cut(s)	29
AcoI	YGGCCR	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	374
AfaI	GTAC	1 cut(s)	261
AflIII	ACRYGT	2 cut(s)	146, 176
AgsI	TTSAA	2 cut(s)	292, 365
AjnI	CCWGG	2 cut(s)	76, 370
AluBI	AGCT	3 cut(s)	86, 352, 459
AluI	AGCT	3 cut(s)	86, 352, 459
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	2 cut(s)	212, 340
AseI	ATTAAT	1 cut(s)	69
AspS9I	GGNCC	1 cut(s)	111
AvaII	GGWCC	1 cut(s)	111
AxyI	CCTNAGG	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	370
BanI	GGYRCC	1 cut(s)	200
BbvCI	CCTCAGC	1 cut(s)	455
BbvI	GCAGC	2 cut(s)	199, 352
BccI	CCATC	2 cut(s)	19, 248
BceAI	ACGGC	1 cut(s)	119
BciT130I	CCWGG	2 cut(s)	78, 372
BisI	GCNGC	3 cut(s)	30, 213, 341
BlsI	GCNGC	3 cut(s)	31, 214, 342
Bme1390I	CCNGG	2 cut(s)	78, 372
Bme18I	GGWCC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	111
BmiI	GGNNCC	3 cut(s)	112, 202, 270
BmrFI	CCNGG	2 cut(s)	78, 372
Bpu10I	CCTNAGC	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	356
BsaBI	GATNNNNATC	1 cut(s)	234
BsaJI	CCNNGG	2 cut(s)	45, 77
Bse21I	CCTNAGG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	234
BseBI	CCWGG	2 cut(s)	78, 372
BseDI	CCNNGG	2 cut(s)	45, 77
BseGI	GGATG	1 cut(s)	73
BseJI	GATNNNNATC	1 cut(s)	234
BseMII	CTCAG	3 cut(s)	278, 469, 493
BseXI	GCAGC	2 cut(s)	199, 352
BshFI	GGCC	1 cut(s)	370
BshNI	GGYRCC	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	370
Bsp143I	GATC	2 cut(s)	117, 314
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	370
BspCNI	CTCAG	4 cut(s)	4, 277, 468, 492
BspLI	GGNNCC	3 cut(s)	112, 202, 270
BspT107I	GGYRCC	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	45, 77
BssMI	GATC	2 cut(s)	117, 314
Bst2UI	CCWGG	2 cut(s)	78, 372
Bst4CI	ACNGT	1 cut(s)	301
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	5 cut(s)	12, 264, 281, 455, 479
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	2 cut(s)	120, 317
BstMBI	GATC	2 cut(s)	117, 314
BstMWI	GCNNNNNNNGC	2 cut(s)	340, 349
BstNI	CCWGG	2 cut(s)	78, 372
BstNSI	RCATGY	2 cut(s)	150, 180
BstSCI	CCNGG	2 cut(s)	76, 370
BstV1I	GCAGC	2 cut(s)	199, 352
Bsu36I	CCTNAGG	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	370
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	73
BtsIMutI	CAGTG	2 cut(s)	9, 306
Cac8I	GCNNGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	111
CseI	GACGC	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	2 cut(s)	147, 177
CviJI	RGCY	8 cut(s)	32, 86, 185, 343, 352, 370, 459, 470
CviKI_1	RGCY	8 cut(s)	32, 86, 185, 343, 352, 370, 459, 470
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	5 cut(s)	12, 264, 281, 455, 479
DpnI	GATC	2 cut(s)	119, 316
DpnII	GATC	2 cut(s)	117, 314
EaeI	YGGCCR	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	374
Eco81I	CCTNAGG	1 cut(s)	264
EcoRII	CCWGG	2 cut(s)	76, 370
FaeI	CATG	2 cut(s)	150, 180
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	2 cut(s)	146, 176
FauNDI	CATATG	1 cut(s)	208
Fnu4HI	GCNGC	3 cut(s)	30, 213, 341
FokI	GGATG	1 cut(s)	60
Fsp4HI	GCNGC	3 cut(s)	30, 213, 341
GluI	GCNGC	3 cut(s)	30, 213, 341
HaeIII	GGCC	1 cut(s)	370
HgaI	GACGC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	150, 180
HinfI	GANTC	5 cut(s)	157, 346, 394, 446, 475
Hpy188III	TCNNGA	2 cut(s)	266, 481
HpyAV	CCTTC	3 cut(s)	147, 283, 287
HpyCH4III	ACNGT	1 cut(s)	301
HpyF10VI	GCNNNNNNNGC	2 cut(s)	340, 349
HpyF3I	CTNAG	5 cut(s)	12, 264, 281, 455, 479
Hsp92II	CATG	2 cut(s)	150, 180
Kzo9I	GATC	2 cut(s)	117, 314
LpnPI	CCDG	9 cut(s)	45, 63, 67, 90, 153, 251, 357, 384, 466
Lsp1109I	GCAGC	2 cut(s)	199, 352
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	2 cut(s)	119, 316
MboI	GATC	2 cut(s)	117, 314
MfeI	CAATTG	1 cut(s)	239
MlsI	TGGCCA	1 cut(s)	370
MluCI	AATT	1 cut(s)	239
MluNI	TGGCCA	1 cut(s)	370
MlyI	GAGTC	4 cut(s)	151, 355, 388, 440
MnlI	CCTC	2 cut(s)	273, 464
Mox20I	TGGCCA	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	370
MseI	TTAA	1 cut(s)	69
Msp20I	TGGCCA	1 cut(s)	370
MspA1I	CMGCKG	1 cut(s)	352
MspR9I	CCNGG	2 cut(s)	78, 372
MunI	CAATTG	1 cut(s)	239
MvaI	CCWGG	2 cut(s)	78, 372
MwoI	GCNNNNNNNGC	2 cut(s)	340, 349
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	2 cut(s)	117, 314
NlaIII	CATG	2 cut(s)	150, 180
NlaIV	GGNNCC	3 cut(s)	112, 202, 270
NmeAIII	GCCGAG	1 cut(s)	369
NspI	RCATGY	2 cut(s)	150, 180
PciI	ACATGT	2 cut(s)	146, 176
PfeI	GAWTC	1 cut(s)	475
PkrI	GCNGC	3 cut(s)	31, 214, 342
PleI	GAGTC	4 cut(s)	151, 354, 388, 440
PpsI	GAGTC	4 cut(s)	151, 354, 388, 440
PscI	ACATGT	2 cut(s)	146, 176
PshBI	ATTAAT	1 cut(s)	69
Psp6I	CCWGG	2 cut(s)	76, 370
PspGI	CCWGG	2 cut(s)	76, 370
PspN4I	GGNNCC	3 cut(s)	112, 202, 270
PspPI	GGNCC	1 cut(s)	111
PvuII	CAGCTG	1 cut(s)	352
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	3 cut(s)	30, 213, 341
Sau3AI	GATC	2 cut(s)	117, 314
Sau96I	GGNCC	1 cut(s)	111
SchI	GAGTC	4 cut(s)	151, 355, 388, 440
ScrFI	CCNGG	2 cut(s)	78, 372
SetI	ASST	7 cut(s)	56, 64, 88, 265, 354, 376, 461
SinI	GGWCC	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	1 cut(s)	239
SsiI	CCGC	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	76, 370
TaaI	ACNGT	1 cut(s)	301
TasI	AATT	1 cut(s)	239
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	475
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	2 cut(s)	16, 306
TseI	GCWGC	2 cut(s)	212, 340
TspDTI	ATGAA	2 cut(s)	17, 426
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	2 cut(s)	16, 306
VpaK11BI	GGWCC	1 cut(s)	111
VspI	ATTAAT	1 cut(s)	69
XceI	RCATGY	2 cut(s)	150, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.