Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000309.1

Orthogroup ID

OG0003022

Physical Location & Seq

Genomic Coordinates Forward (+)

296892 .. 299723

Gene Structure 2832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000309.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atggttcggttgctgtggaaacaaacggcctatggctttgttattcatgatgcacatggttctccgctcttggctggtgctagaagtgttggtaataccattagcccaaatactgaagtcctactgcactcgttggctttccattttcatccctcaaactctgagcgcgcaatccagagcgaccaagtgagcaggatggcggctgttttgcagtccgtggcaacatgttcaggtttgattcaccatccaggtagtgctaaactaccatttgggaataaggggaccaagatcactaatcacagtgccgtttcagtaacatgtagaaggacttgtagagcagggattcaatgtttggctgtacgtcgggttggcaccacatatgctgcgtctgtgggaaaggatcatcagcagttgagtattgatgatggagtacctcaggagcccttccttctgagtcttttcaaagaaatagtgtggtctttgagatcattattcatttttctgcttgagcagccaagtcagctgaagtacattgaatggccaggtttccgtagtacgctgaagactgcaactctcactcttgttcttgtggcattgctcattgtagcactttcatcaactgactctgccctcagctatttgttggctttgattctcaggagtaaaccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SecE

Protein Analysis

223

Amino Acids

24.3

Weight (kDa)

9.73

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38490
fragaria_vesca	FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660 FvH4_2g15660
malus_domestica	MD10G1127900.v1.1 MD10G1128000.v1.1
prunus_persica	Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1 Prupe.8G169100_v2.0.a1
pyrus_communis	pycom10g10960
rosa_chinensis	RchiOBHm_Chr6g0278901 RchiOBHm_Chr6g0278921 RchiOBHm_Chr6g0278961
rosa_multiflora	Rmu_sc0000309.1_g000056 Rmu_sc0009618.1_g000001 Rmu_sc0009618.1_g000014
rosa_roxburghii	Rroxscaffold_7G00189310 Rroxscaffold_7G00189390 Rroxscaffold_7G00189530
rosa_rugosa	Rorug06G0120200 Rorug06G0120400 Rorug06G0120500 Rorug06G0120500
rosa_samantha	Rh6AG229100 Rh6BG234300 Rh6CG236500 Rh6DG227800 Rh6DG228100
rosa_wichuraiana	Rw6G020050 Rw6G020060 Rw6G020170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	371
AccBSI	CCGCTC	1 cut(s)	67
AccII	CGCG	1 cut(s)	168
AciI	CCGC	2 cut(s)	65, 200
AclWI	GGATC	1 cut(s)	408
AcoI	YGGCCR	1 cut(s)	539
AcuI	CTGAAG	3 cut(s)	135, 545, 581
AfaI	GTAC	4 cut(s)	360, 432, 530, 556
AflIII	ACRYGT	2 cut(s)	224, 317
AgsI	TTSAA	3 cut(s)	347, 463, 536
AjnI	CCWGG	2 cut(s)	247, 541
AluBI	AGCT	2 cut(s)	523, 636
AluI	AGCT	2 cut(s)	523, 636
AlwI	GGATC	1 cut(s)	408
AoxI	GGCC	2 cut(s)	27, 539
ApeKI	GCWGC	2 cut(s)	383, 511
AspLEI	GCGC	2 cut(s)	168, 170
AspS9I	GGNCC	1 cut(s)	282
AsuHPI	GGTGA	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	282
AxyI	CCTNAGG	1 cut(s)	435
BalI	TGGCCA	1 cut(s)	541
BanI	GGYRCC	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	444
BbsI	GAAGAC	1 cut(s)	569
BbvCI	CCTCAGC	1 cut(s)	632
BbvI	GCAGC	2 cut(s)	370, 523
BccI	CCATC	3 cut(s)	190, 252, 419
BceAI	ACGGC	2 cut(s)	42, 290
BciT130I	CCWGG	2 cut(s)	249, 543
BfaI	CTAG	1 cut(s)	81
BisI	GCNGC	3 cut(s)	201, 384, 512
BlsI	GCNGC	3 cut(s)	202, 385, 513
Bme1390I	CCNGG	2 cut(s)	249, 543
Bme18I	GGWCC	1 cut(s)	282
BmgT120I	GGNCC	1 cut(s)	282
BmiI	GGNNCC	3 cut(s)	283, 373, 441
BmrFI	CCNGG	2 cut(s)	249, 543
BmsI	GCATC	1 cut(s)	40
BpiI	GAAGAC	1 cut(s)	569
Bpu10I	CCTNAGC	1 cut(s)	632
BpuEI	CTTGAG	1 cut(s)	527
BsaJI	CCNNGG	1 cut(s)	216
Bse21I	CCTNAGG	1 cut(s)	435
Bse3DI	GCAATG	1 cut(s)	593
BseBI	CCWGG	2 cut(s)	249, 543
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	3 cut(s)	148, 201, 244
BseMI	GCAATG	1 cut(s)	593
BseMII	CTCAG	5 cut(s)	153, 443, 449, 646, 670
BsePI	GCGCGC	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	370, 523
BsgI	GTGCAG	1 cut(s)	110
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	29, 541
BshNI	GGYRCC	1 cut(s)	371
BslFI	GGGAC	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	295
BsnI	GGCC	2 cut(s)	29, 541
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	3 cut(s)	288, 400, 485
BspACI	CCGC	2 cut(s)	65, 200
BspANI	GGCC	2 cut(s)	29, 541
BspCNI	CTCAG	5 cut(s)	154, 444, 448, 645, 669
BspFNI	CGCG	1 cut(s)	168
BspHI	TCATGA	1 cut(s)	46
BspLI	GGNNCC	3 cut(s)	283, 373, 441
BspPI	GGATC	1 cut(s)	408
BspT107I	GGYRCC	1 cut(s)	371
BsrBI	CCGCTC	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	593
BssECI	CCNNGG	1 cut(s)	216
BssHII	GCGCGC	1 cut(s)	166
BssMI	GATC	3 cut(s)	288, 400, 485
Bst2UI	CCWGG	2 cut(s)	249, 543
Bst4CI	ACNGT	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	5 cut(s)	162, 435, 452, 632, 656
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	3 cut(s)	148, 201, 244
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	2 cut(s)	168, 170
BstKTI	GATC	3 cut(s)	291, 403, 488
BstMBI	GATC	3 cut(s)	288, 400, 485
BstMWI	GCNNNNNNNGC	2 cut(s)	511, 520
BstNI	CCWGG	2 cut(s)	249, 543
BstNSI	RCATGY	2 cut(s)	228, 321
BstSCI	CCNGG	2 cut(s)	247, 541
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	370, 523
BstV2I	GAAGAC	1 cut(s)	569
Bsu36I	CCTNAGG	1 cut(s)	435
BsuRI	GGCC	2 cut(s)	29, 541
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	3 cut(s)	148, 201, 244
BtsIMutI	CAGTG	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	168
CciI	TCATGA	1 cut(s)	46
CfoI	GCGC	2 cut(s)	168, 170
Cfr13I	GGNCC	1 cut(s)	282
CseI	GACGC	1 cut(s)	375
Csp6I	GTAC	4 cut(s)	359, 431, 529, 555
CviAII	CATG	4 cut(s)	47, 56, 225, 318
CviQI	GTAC	4 cut(s)	359, 431, 529, 555
DdeI	CTNAG	5 cut(s)	162, 435, 452, 632, 656
DpnI	GATC	3 cut(s)	290, 402, 487
DpnII	GATC	3 cut(s)	288, 400, 485
EaeI	YGGCCR	1 cut(s)	539
Eco24I	GRGCYC	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	282
Eco57I	CTGAAG	3 cut(s)	135, 545, 581
Eco81I	CCTNAGG	1 cut(s)	435
EcoRII	CCWGG	2 cut(s)	247, 541
EcoT38I	GRGCYC	1 cut(s)	444
FaeI	CATG	4 cut(s)	50, 59, 228, 321
FaiI	YATR	8 cut(s)	33, 48, 57, 226, 319, 379, 381, 670
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	4 cut(s)	46, 55, 224, 317
FauNDI	CATATG	1 cut(s)	379
Fnu4HI	GCNGC	3 cut(s)	201, 384, 512
FokI	GGATG	3 cut(s)	135, 208, 231
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	3 cut(s)	201, 384, 512
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	2 cut(s)	167, 169
GluI	GCNGC	3 cut(s)	201, 384, 512
HaeIII	GGCC	2 cut(s)	29, 541
HgaI	GACGC	1 cut(s)	375
HhaI	GCGC	2 cut(s)	168, 170
Hin1II	CATG	4 cut(s)	50, 59, 228, 321
Hin6I	GCGC	2 cut(s)	166, 168
HinP1I	GCGC	2 cut(s)	166, 168
HinfI	GANTC	5 cut(s)	238, 343, 454, 623, 652
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	665
Hpy188I	TCNGA	2 cut(s)	163, 453
Hpy188III	TCNNGA	4 cut(s)	47, 175, 437, 658
Hpy8I	GTNNAC	1 cut(s)	665
Hpy99I	CGWCG	1 cut(s)	366
HpyAV	CCTTC	3 cut(s)	318, 454, 458
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	1 cut(s)	361
HpyCH4V	TGCA	4 cut(s)	53, 127, 211, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	511, 520
HpyF3I	CTNAG	5 cut(s)	162, 435, 452, 632, 656
HpySE526I	ACGT	1 cut(s)	361
Hsp92II	CATG	4 cut(s)	50, 59, 228, 321
HspAI	GCGC	2 cut(s)	166, 168
Kzo9I	GATC	3 cut(s)	288, 400, 485
LmnI	GCTCC	1 cut(s)	439
Lsp1109I	GCAGC	2 cut(s)	370, 523
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	81
MaeII	ACGT	1 cut(s)	361
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	3 cut(s)	290, 402, 487
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	3 cut(s)	288, 400, 485
MboII	GAAGA	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	444
MlsI	TGGCCA	1 cut(s)	541
MluNI	TGGCCA	1 cut(s)	541
MlyI	GAGTC	2 cut(s)	463, 617
MnlI	CCTC	3 cut(s)	163, 444, 641
Mox20I	TGGCCA	1 cut(s)	541
MscI	TGGCCA	1 cut(s)	541
Msp20I	TGGCCA	1 cut(s)	541
MspA1I	CMGCKG	1 cut(s)	523
MspR9I	CCNGG	2 cut(s)	249, 543
MvaI	CCWGG	2 cut(s)	249, 543
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	511, 520
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	3 cut(s)	288, 400, 485
NlaIII	CATG	4 cut(s)	50, 59, 228, 321
NlaIV	GGNNCC	3 cut(s)	283, 373, 441
NspI	RCATGY	2 cut(s)	228, 321
PagI	TCATGA	1 cut(s)	46
PauI	GCGCGC	1 cut(s)	166
PciI	ACATGT	2 cut(s)	224, 317
PfeI	GAWTC	3 cut(s)	238, 343, 652
PkrI	GCNGC	3 cut(s)	202, 385, 513
PleI	GAGTC	2 cut(s)	462, 617
PpsI	GAGTC	2 cut(s)	462, 617
PscI	ACATGT	2 cut(s)	224, 317
Psp6I	CCWGG	2 cut(s)	247, 541
PspGI	CCWGG	2 cut(s)	247, 541
PspN4I	GGNNCC	3 cut(s)	283, 373, 441
PspPI	GGNCC	1 cut(s)	282
PteI	GCGCGC	1 cut(s)	166
PvuII	CAGCTG	1 cut(s)	523
RsaI	GTAC	4 cut(s)	360, 432, 530, 556
RsaNI	GTAC	4 cut(s)	359, 431, 529, 555
SatI	GCNGC	3 cut(s)	201, 384, 512
Sau3AI	GATC	3 cut(s)	288, 400, 485
Sau96I	GGNCC	1 cut(s)	282
SchI	GAGTC	2 cut(s)	463, 617
ScrFI	CCNGG	2 cut(s)	249, 543
SduI	GDGCHC	1 cut(s)	444
SetI	ASST	7 cut(s)	235, 253, 364, 436, 525, 547, 638
SfaNI	GCATC	1 cut(s)	40
SinI	GGWCC	1 cut(s)	282
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
SsiI	CCGC	2 cut(s)	65, 200
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	247, 541
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	1 cut(s)	364
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	3 cut(s)	238, 343, 652
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	2 cut(s)	383, 511
TspDTI	ATGAA	4 cut(s)	35, 137, 484, 603
TspGWI	ACGGA	2 cut(s)	205, 539
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	282
XceI	RCATGY	2 cut(s)	228, 321
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.