MD05G1214800.v1.1

Cleavage inducing molecular chaperone

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
34575951 .. 34583685
7735 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1214800.v1.1.491

Sequence Viewer

Length: 1662 bp
ATGGAGGATATAGGGTTGTTTAGACAAGCTTGGAAATGGCTGCAGTCACAGAAACACATTTATTCACGATCGGGAACTGCGATCGGTGGGTGTGGAGATAAAATCGGGATGTTTGTAGAACGGCATTGGCCGATGGTGTGCAGTGGGTGCGCCAGGACAGGGAGGCTGTTGATCCTGTTGTTGATTTATTGGTGGGACTGCATCATAAGAGGTTTTCAATCCTTTATTGGGTTGGGTTCTGCAGCTTTGCTCCTTATAATGTGGAGTTGCTTTCTCAGTTTGACTTCAATTTCTTGCTTGGTTTATGTACTTCTTAGTATGGGAGCTGCTGGAGCTGCTGTCCAGTACTTGGGTTACACTCCAGGACTTTTTATTGTAGGGATCTTCGCTATTCTGATTTTATGGATGTACGCTAACTTTTGGATAACGGGAATCTTATTTATAGTTGGAGGTTATTTGTTCTCCCTAAATCATGCACGGTTGCTGGTCTTGATGGCAACTGTTTATGCTATTTATTGTGTCAAAGTTCAAGTTGGATGGCATGGTGTAGTTCTCTCAATAAACCTTGCATTTTTCTCTAATGATGCATTAAATTATGTGCTCCAATGGTGTGATAAAGTGAGCGAAAGCACACACTTCGAAGAGCAAAAGCAATCAGAAACAATTATGGAGGATGATTTTTCTGGGGAATTTGAATACTCTATTCCTACTGATGAACCTGAAAAGCTGCACTCATGTAACTCATCTAGCACGCCAGCTACTTCAACTATTATAAATGACCGAAAAGAATCTTTCCCTATTAAGGTGGTCAAAGAGGAAAAAAGTTCAGCTGATGAAATGAAAAAGATTTTGGACAGTATTGATCATTATGAAGCACTAGGATTTCCTCGCCACAAAAAAATTGATGCAGCAATATTGAAAAAAGAATACCGGAAGAAGGCCATGCTTGTGCATCCTGATAAAAATATGGGAAGTGCATTAGCAAGTGAAGCGTTTAAGAGAGTTCAATGTGCATTTGAGGTTCTCTCTGATTCCACAAAGAAGAGAGACTATGATGAGCAGTTGCGGAAGGAAGAATCCAAGACTAAGAGTGTGTGCCAGAAGTCCTATGGTACTTCACATCAGGATGGTCCAGATTATTTTTCTGAAGAGTCGAGACGTATACAGTGCACTAAGTGTGGAAATTCGCATATATGGATATGCACAAACAGAAGCAAGGCCAAGGCTAGATGGTGTCAGGATTGCTGTCAATATCACCAAGCAAAGGATGGAGATGGATGGGTTGAGTACAAAGGAACTTTAGTATTTAATAGGCCACATAAGGTGGAAATACCACGGGCCTTCGTCTGTGCTGAGAGCAAAATCTTTGATGTATCTGAATGGGCTATTTGTCAGGGAATGGCGTGCAGGCCCAACACTCATAGGCCTAGCTTCCACGTTAACATGGTTGGTTTGGAGAAAACTCAAAGATCCAACTCAAGTAGATTCCCGTGGGATTTGGATGCTGAAATGATGGATGAAGATGAAGAAGAATTTGAGGTGTGGCTTCAGCAAGCTCTGGCCTCTGGCCTCTTTTGTGAGTCCTCTAAACGCCGAAAGAGCTGGAGTCCATTCAAGTTGCCCCAGAGAGTGAAGAGGCAATCGCGAAGAACGTCATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

554

Amino Acids

63.22

Weight (kDa)

8.23

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 288 - 352 1e-17 DnaJ domain
Jiv90 PF14901 384 - 481 7.8e-36 Cleavage inducing molecular chaperone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 257, 773
AccB7I CCANNNNNTGG 1 cut(s) 349
AccI GTMKAC 1 cut(s) 1162
AccII CGCG 1 cut(s) 1645
AciI CCGC 1 cut(s) 1066
AclWI GGATC 3 cut(s) 166, 389, 1464
AcoI YGGCCR 1 cut(s) 128
AcsI RAATTY 3 cut(s) 689, 1183, 1532
AcuI CTGAAG 2 cut(s) 1167, 1532
AdeI CACNNNGTG 1 cut(s) 1176
AfaI GTAC 5 cut(s) 309, 347, 410, 1114, 1289
AfiI CCNNNNNNNGG 6 cut(s) 159, 228, 349, 802, 937, 1264
AgsI TTSAA 8 cut(s) 218, 288, 530, 695, 765, 919, 1007, 1615
AjnI CCWGG 2 cut(s) 152, 361
AjuI GAANNNNNNNTTGG 2 cut(s) 833, 865
Alw21I GWGCWC 2 cut(s) 603, 1172
Alw26I GTCTC 2 cut(s) 1041, 1150
Alw44I GTGCAC 1 cut(s) 1168
AlwI GGATC 3 cut(s) 166, 389, 1464
AoxI GGCC 9 cut(s) 128, 939, 1218, 1313, 1338, 1409, 1424, 1560, 1567
ApaLI GTGCAC 1 cut(s) 1168
ApeKI GCWGC 6 cut(s) 40, 242, 326, 335, 727, 908
ApoI RAATTY 3 cut(s) 689, 1183, 1532
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 3 cut(s) 1130, 1338, 1410
AsuHPI GGTGA 1 cut(s) 1247
AsuII TTCGAA 1 cut(s) 639
AvaII GGWCC 1 cut(s) 1130
BaeGI GKGCMC 1 cut(s) 1172
Bbv12I GWGCWC 2 cut(s) 603, 1172
BbvI GCAGC 6 cut(s) 27, 254, 313, 322, 714, 920
BccI CCATC 9 cut(s) 127, 487, 531, 1121, 1224, 1262, 1268, 1272, 1507
BceAI ACGGC 1 cut(s) 137
BcgI CGANNNNNNTGC 2 cut(s) 619, 653
BciT130I CCWGG 2 cut(s) 154, 363
BclI TGATCA 1 cut(s) 862
BcoDI GTCTC 2 cut(s) 1041, 1150
BfaI CTAG 4 cut(s) 747, 878, 1227, 1428
BfmI CTRYAG 2 cut(s) 41, 240
BisI GCNGC 6 cut(s) 41, 243, 327, 336, 728, 909
BlsI GCNGC 6 cut(s) 42, 244, 328, 337, 729, 910
BmcAI AGTACT 1 cut(s) 347
Bme1390I CCNGG 2 cut(s) 154, 363
Bme18I GGWCC 1 cut(s) 1130
BmgT120I GGNCC 3 cut(s) 1130, 1338, 1410
BmrFI CCNGG 2 cut(s) 154, 363
BmsI GCATC 5 cut(s) 210, 574, 895, 961, 1492
BplI GAGNNNNNCTC 2 cut(s) 1010, 1042
BpmI CTGGAG 3 cut(s) 345, 351, 1624
Bpu14I TTCGAA 1 cut(s) 639
BpuEI CTTGAG 1 cut(s) 1462
BsaJI CCNNGG 3 cut(s) 1221, 1334, 1490
BsaWI WCCGGW 1 cut(s) 930
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 6 cut(s) 159, 228, 349, 802, 937, 1264
Bse1I ACTGG 1 cut(s) 343
BseBI CCWGG 2 cut(s) 154, 363
BseDI CCNNGG 3 cut(s) 1221, 1334, 1490
BseLI CCNNNNNNNGG 6 cut(s) 159, 228, 349, 802, 937, 1264
BseMII CTCAG 2 cut(s) 289, 1344
BseNI ACTGG 1 cut(s) 343
BseSI GKGCMC 1 cut(s) 1172
BseXI GCAGC 6 cut(s) 27, 254, 313, 322, 714, 920
BsgI GTGCAG 3 cut(s) 160, 713, 1426
Bsh1236I CGCG 1 cut(s) 1645
Bsh1285I CGRYCG 2 cut(s) 71, 84
BshFI GGCC 9 cut(s) 130, 941, 1220, 1315, 1340, 1411, 1426, 1562, 1569
BsiEI CGRYCG 2 cut(s) 71, 84
BsiHKAI GWGCWC 2 cut(s) 603, 1172
BsiSI CCGG 1 cut(s) 931
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 6 cut(s) 159, 228, 349, 802, 937, 1264
BsmAI GTCTC 2 cut(s) 1041, 1150
BsmBI CGTCTC 1 cut(s) 1150
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 9 cut(s) 130, 941, 1220, 1315, 1340, 1411, 1426, 1562, 1569
Bsp119I TTCGAA 1 cut(s) 639
Bsp1286I GDGCHC 2 cut(s) 603, 1172
Bsp143I GATC 6 cut(s) 68, 81, 171, 381, 862, 1469
Bsp68I TCGCGA 1 cut(s) 1645
BspACI CCGC 1 cut(s) 1066
BspANI GGCC 9 cut(s) 130, 941, 1220, 1315, 1340, 1411, 1426, 1562, 1569
BspCNI CTCAG 2 cut(s) 288, 1345
BspFNI CGCG 1 cut(s) 1645
BspMAI CTGCAG 2 cut(s) 45, 244
BspPI GGATC 3 cut(s) 166, 389, 1464
BspQI GCTCTTC 1 cut(s) 636
BspT104I TTCGAA 1 cut(s) 639
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 3 cut(s) 1221, 1334, 1490
BssMI GATC 6 cut(s) 68, 81, 171, 381, 862, 1469
BssNAI GTATAC 1 cut(s) 1163
BssT1I CCWWGG 1 cut(s) 1221
Bst1107I GTATAC 1 cut(s) 1163
Bst2UI CCWGG 2 cut(s) 154, 363
Bst4CI ACNGT 4 cut(s) 480, 502, 857, 1167
Bst6I CTCTTC 4 cut(s) 636, 1037, 1143, 1628
BstAPI GCANNNNNTGC 1 cut(s) 147
BstBI TTCGAA 1 cut(s) 639
BstC8I GCNNGC 5 cut(s) 752, 756, 1405, 1409, 1554
BstDEI CTNAG 5 cut(s) 275, 314, 1086, 1173, 1353
BstDSI CCRYGG 2 cut(s) 1334, 1490
BstFNI CGCG 1 cut(s) 1645
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 6 cut(s) 71, 84, 174, 384, 865, 1472
BstMAI GTCTC 2 cut(s) 1041, 1150
BstMBI GATC 6 cut(s) 68, 81, 171, 381, 862, 1469
BstMCI CGRYCG 2 cut(s) 71, 84
BstMWI GCNNNNNNNGC 5 cut(s) 147, 332, 335, 989, 1599
BstNI CCWGG 2 cut(s) 154, 363
BstSCI CCNGG 2 cut(s) 152, 361
BstSFI CTRYAG 2 cut(s) 41, 240
BstSLI GKGCMC 1 cut(s) 1172
BstUI CGCG 1 cut(s) 1645
BstV1I GCAGC 6 cut(s) 27, 254, 313, 322, 714, 920
BstX2I RGATCY 2 cut(s) 381, 1469
BstYI RGATCY 2 cut(s) 381, 1469
BstZ17I GTATAC 1 cut(s) 1163
BsuRI GGCC 9 cut(s) 130, 941, 1220, 1315, 1340, 1411, 1426, 1562, 1569
BtgI CCRYGG 2 cut(s) 1334, 1490
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 2 cut(s) 148, 1172
BtuMI TCGCGA 1 cut(s) 1645
Cac8I GCNNGC 5 cut(s) 752, 756, 1405, 1409, 1554
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 3 cut(s) 1130, 1338, 1410
Csp6I GTAC 5 cut(s) 308, 346, 409, 1113, 1288
CviAII CATG 6 cut(s) 473, 542, 735, 943, 1444, 1656
CviQI GTAC 5 cut(s) 308, 346, 409, 1113, 1288
DdeI CTNAG 5 cut(s) 275, 314, 1086, 1173, 1353
DpnI GATC 6 cut(s) 70, 83, 173, 383, 864, 1471
DpnII GATC 6 cut(s) 68, 81, 171, 381, 862, 1469
DraIII CACNNNGTG 1 cut(s) 1176
EaeI YGGCCR 1 cut(s) 128
Eam1104I CTCTTC 4 cut(s) 636, 1037, 1143, 1628
EarI CTCTTC 4 cut(s) 636, 1037, 1143, 1628
Eco130I CCWWGG 1 cut(s) 1221
Eco147I AGGCCT 1 cut(s) 1426
Eco47I GGWCC 1 cut(s) 1130
Eco57I CTGAAG 2 cut(s) 1167, 1532
EcoRII CCWGG 2 cut(s) 152, 361
EcoT14I CCWWGG 1 cut(s) 1221
EcoT22I ATGCAT 1 cut(s) 589
ErhI CCWWGG 1 cut(s) 1221
Esp3I CGTCTC 1 cut(s) 1150
FaeI CATG 6 cut(s) 476, 545, 738, 946, 1447, 1659
FaqI GGGAC 1 cut(s) 209
FatI CATG 6 cut(s) 472, 541, 734, 942, 1443, 1655
FbaI TGATCA 1 cut(s) 862
FblI GTMKAC 1 cut(s) 1162
Fnu4HI GCNGC 6 cut(s) 41, 243, 327, 336, 728, 909
Fsp4HI GCNGC 6 cut(s) 41, 243, 327, 336, 728, 909
FspBI CTAG 4 cut(s) 747, 878, 1227, 1428
GlaI GCGC 1 cut(s) 151
GluI GCNGC 6 cut(s) 41, 243, 327, 336, 728, 909
GsuI CTGGAG 3 cut(s) 345, 351, 1624
HaeIII GGCC 9 cut(s) 130, 941, 1220, 1315, 1340, 1411, 1426, 1562, 1569
HapII CCGG 1 cut(s) 931
HhaI GCGC 1 cut(s) 152
Hin1II CATG 6 cut(s) 476, 545, 738, 946, 1447, 1659
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HincII GTYRAC 1 cut(s) 1441
HindII GTYRAC 1 cut(s) 1441
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 8 cut(s) 432, 788, 1031, 1076, 1151, 1485, 1580, 1606
HpaI GTTAAC 1 cut(s) 1441
HpaII CCGG 1 cut(s) 931
HphI GGTGA 1 cut(s) 1247
Hpy166II GTNNAC 3 cut(s) 1163, 1170, 1441
Hpy188I TCNGA 5 cut(s) 396, 658, 1030, 1147, 1378
Hpy8I GTNNAC 3 cut(s) 1163, 1170, 1441
HpyAV CCTTC 3 cut(s) 931, 1063, 1351
HpyCH4III ACNGT 4 cut(s) 480, 502, 857, 1167
HpyCH4IV ACGT 3 cut(s) 1159, 1437, 1652
HpyF10VI GCNNNNNNNGC 5 cut(s) 147, 332, 335, 989, 1599
HpyF3I CTNAG 5 cut(s) 275, 314, 1086, 1173, 1353
HpySE526I ACGT 3 cut(s) 1159, 1437, 1652
Hsp92II CATG 6 cut(s) 476, 545, 738, 946, 1447, 1659
HspAI GCGC 1 cut(s) 150
Ksp22I TGATCA 1 cut(s) 862
KspAI GTTAAC 1 cut(s) 1441
Kzo9I GATC 6 cut(s) 68, 81, 171, 381, 862, 1469
LguI GCTCTTC 1 cut(s) 636
LmnI GCTCC 4 cut(s) 255, 323, 332, 606
Lsp1109I GCAGC 6 cut(s) 27, 254, 313, 322, 714, 920
LweI GCATC 5 cut(s) 210, 574, 895, 961, 1492
MaeI CTAG 4 cut(s) 747, 878, 1227, 1428
MaeII ACGT 3 cut(s) 1159, 1437, 1652
MaeIII GTNAC 3 cut(s) 45, 353, 737
MalI GATC 6 cut(s) 70, 83, 173, 383, 864, 1471
MboI GATC 6 cut(s) 68, 81, 171, 381, 862, 1469
MflI RGATCY 2 cut(s) 381, 1469
MhlI GDGCHC 2 cut(s) 603, 1172
MluCI AATT 7 cut(s) 288, 592, 663, 689, 900, 1183, 1532
MlyI GAGTC 3 cut(s) 1160, 1589, 1615
MmeI TCCRAC 3 cut(s) 427, 514, 1497
Mph1103I ATGCAT 1 cut(s) 589
MseI TTAA 5 cut(s) 590, 801, 996, 1308, 1440
MslI CAYNNNNRTG 2 cut(s) 947, 1125
MspA1I CMGCKG 1 cut(s) 830
MspI CCGG 1 cut(s) 931
MspR9I CCNGG 2 cut(s) 154, 363
MvaI CCWGG 2 cut(s) 154, 363
MvnI CGCG 1 cut(s) 1645
MwoI GCNNNNNNNGC 5 cut(s) 147, 332, 335, 989, 1599
NdeII GATC 6 cut(s) 68, 81, 171, 381, 862, 1469
NlaIII CATG 6 cut(s) 476, 545, 738, 946, 1447, 1659
NmuCI GTSAC 1 cut(s) 45
NruI TCGCGA 1 cut(s) 1645
NsiI ATGCAT 1 cut(s) 589
NspV TTCGAA 1 cut(s) 639
PceI AGGCCT 1 cut(s) 1426
PciSI GCTCTTC 1 cut(s) 636
PcsI WCGNNNNNNNCGW 2 cut(s) 77, 1649
PfeI GAWTC 5 cut(s) 432, 788, 1031, 1076, 1485
PflMI CCANNNNNTGG 1 cut(s) 349
PfoI TCCNGGA 1 cut(s) 361
PkrI GCNGC 6 cut(s) 42, 244, 328, 337, 729, 910
Ple19I CGATCG 2 cut(s) 71, 84
PleI GAGTC 3 cut(s) 1159, 1588, 1614
PpsI GAGTC 3 cut(s) 1159, 1588, 1614
PsiI TTATAA 2 cut(s) 257, 773
Psp6I CCWGG 2 cut(s) 152, 361
PspGI CCWGG 2 cut(s) 152, 361
PspPI GGNCC 3 cut(s) 1130, 1338, 1410
PstI CTGCAG 2 cut(s) 45, 244
PsuI RGATCY 2 cut(s) 381, 1469
PvuI CGATCG 2 cut(s) 71, 84
PvuII CAGCTG 1 cut(s) 830
RruI TCGCGA 1 cut(s) 1645
RsaI GTAC 5 cut(s) 309, 347, 410, 1114, 1289
RsaNI GTAC 5 cut(s) 308, 346, 409, 1113, 1288
RseI CAYNNNNRTG 2 cut(s) 947, 1125
SapI GCTCTTC 1 cut(s) 636
SaqAI TTAA 5 cut(s) 590, 801, 996, 1308, 1440
SatI GCNGC 6 cut(s) 41, 243, 327, 336, 728, 909
Sau3AI GATC 6 cut(s) 68, 81, 171, 381, 862, 1469
Sau96I GGNCC 3 cut(s) 1130, 1338, 1410
ScaI AGTACT 1 cut(s) 347
SchI GAGTC 3 cut(s) 1160, 1589, 1615
ScrFI CCNGG 2 cut(s) 154, 363
SduI GDGCHC 2 cut(s) 603, 1172
SfaNI GCATC 5 cut(s) 210, 574, 895, 961, 1492
SfcI CTRYAG 2 cut(s) 41, 240
SfuI TTCGAA 1 cut(s) 639
SinI GGWCC 1 cut(s) 1130
SmiMI CAYNNNNRTG 2 cut(s) 947, 1125
SmlI CTYRAG 1 cut(s) 1477
SmoI CTYRAG 1 cut(s) 1477
Sse9I AATT 7 cut(s) 288, 592, 663, 689, 900, 1183, 1532
SseBI AGGCCT 1 cut(s) 1426
SsiI CCGC 1 cut(s) 1066
SspI AATATT 1 cut(s) 915
SspMI CTAG 4 cut(s) 747, 878, 1227, 1428
StuI AGGCCT 1 cut(s) 1426
StyD4I CCNGG 2 cut(s) 152, 361
StyI CCWWGG 1 cut(s) 1221
TaaI ACNGT 4 cut(s) 480, 502, 857, 1167
TaiI ACGT 3 cut(s) 1162, 1440, 1655
TaqI TCGA 2 cut(s) 639, 1154
TaqII GACCGA 1 cut(s) 795
TasI AATT 7 cut(s) 288, 592, 663, 689, 900, 1183, 1532
TatI WGTACW 3 cut(s) 307, 345, 1287
TfiI GAWTC 5 cut(s) 432, 788, 1031, 1076, 1485
Tru1I TTAA 5 cut(s) 590, 801, 996, 1308, 1440
Tru9I TTAA 5 cut(s) 590, 801, 996, 1308, 1440
TscAI CASTG 2 cut(s) 148, 1172
TseFI GTSAC 1 cut(s) 45
TseI GCWGC 6 cut(s) 40, 242, 326, 335, 727, 908
Tsp45I GTSAC 1 cut(s) 45
TspDTI ATGAA 6 cut(s) 729, 849, 854, 885, 1533, 1539
TspRI CASTG 2 cut(s) 148, 1172
Van91I CCANNNNNTGG 1 cut(s) 349
VneI GTGCAC 1 cut(s) 1168
VpaK11BI GGWCC 1 cut(s) 1130
XapI RAATTY 3 cut(s) 689, 1183, 1532
XcmI CCANNNNNNNNNTGG 2 cut(s) 1106, 1265
XmiI GTMKAC 1 cut(s) 1162
XspI CTAG 4 cut(s) 747, 878, 1227, 1428
ZrmI AGTACT 1 cut(s) 347
Zsp2I ATGCAT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.