Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008736

Physical Location & Seq

Genomic Coordinates Forward (+)

20645238 .. 20652312

Gene Structure 7075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG188100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGAGGATATAGGGCTATACAAGCAAGGCTTGAAATGGCTGCAGTCTCAGAAGCACGTTTATTTTAGATCGAAAATAGCTGTCAGTGGATATAGAGATAAAATGGGGATGTTTGCAGAGCGGCATTGGCCGATGGTGTGCAGTGGGTGCTCCAGAATGGGGCGGCTGTTGCTCTTGTTGTTGTGTTATTGGAGGGACTGTGTTGTAAGAGGCTTTCGGTCATTTATAGGGTTTGGTTCTGCAGCTTTGCTTCTTATAATGTGGAGTTGCTTTCTCAGTTTGACTTCCATGTCTTGCTTGGTTTATGTGCTTCTCAGTATGGGAGTCGCTGGAGCTGCTGTTCATTACTTGGGATACACTCCCGGAATTTTTATTGTAGGGCTCTTCGCTATTCTGATCTTATGGATGTATGCTAACTTTTGGATAACAGGAACATTATTTATAGTTGGAGGTTATTTGTTCTCCCTTAATCATGCACGGTTGGTGGTCTTGATGGCAACCGTATATGCTATTTATTGTGTCAAAGTACAAGTTGGATGGCATGGGGTTCTGCTCGCAATAAACCTTGCCTTCTTCTCCAACGATGTATTAAATTATATTCTCCAATGGTGTGATAAGGTGACTGAGAGCCCACATTTTGAAGAGCAGAAACAATCAGAAGAAGTAATGGAAGATGACTTTTCTACAGAGTGTGATTACTCTATTCCTACTGATGAACCTGAAAAGGTGCACTCATGTAAATCATCGAGCAAGCCAGCTACTTCAGCTGTCATTAATATTGAGAAAGAATCCTGTTCTAGTAGTAAGGTGGTCAAAGAGGAAACAAGTTCAGCCGATGAGATGCAAAAAATACTAAGCAGTATTAATCATTATGAAGCACTGGGATTTCCTCGCCACCAGAAAATTGATGCTGCAACTTTGAAAAAGGAATACCGGAAGAAGGCCATGCTTGTGCATCCTGATAAAAATATGGGAAGTGCACTAGCAAGTGAGTCATTTAAGAGACTTCAATGTGCATATGAGGTTCTTTCGGATTCCATAAAGAAAAGAGATTATGATGAGCAATTACGGAAGGAAGAATCAAAGACTAAGAGTGTGTGCCAGACCTCTTATGCTACTTCAGCTCAGGACCGTCCAGGTTATTGTTCTGAAGAGTCGCGACGTATACAATGCACCAAGTGTGGAAATTCTCATATATGGGTGTGCACCAATAGAAGTAAGACCAAGGCTAGATGGTGTCAGGTCAGACATTATATTGTTATATTTTATTTTTTCAAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ Jiv90

Protein Analysis

427

Amino Acids

48.82

Weight (kDa)

8.74

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	289 - 353	5.6e-18	DnaJ domain
Jiv90	PF14901	385 - 414	2.7e-07	Cleavage inducing molecular chaperone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16680 AT1G79030 AT1G79030
fragaria_vesca	FvH4_3g16080
malus_domestica	MD05G1214400.v1.1 MD05G1214800.v1.1 MD10G1197900.v1.1
prunus_persica	Prupe.4G144000_v2.0.a1 Prupe.4G144000_v2.0.a1 Prupe.4G144000_v2.0.a1
pyrus_communis	pycom05g19790 pycom10g17060
rosa_chinensis	RchiOBHm_Chr5g0027051
rosa_laevigata	RLG00000032985
rosa_multiflora	Rmu_sc0000882.1_g000022 Rmu_sc0006065.1_g000030
rosa_roxburghii	Rroxscaffold_1G00052440
rosa_rugosa	Rorug05G0096800
rosa_samantha	Rh5AG190500 Rh5BG188100 Rh5CG207900 Rh5DG189900
rosa_wichuraiana	Rw5G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AasI	GACNNNNNNGTC	1 cut(s)	289
AccBSI	CCGCTC	1 cut(s)	121
AccI	GTMKAC	1 cut(s)	1165
AccII	CGCG	1 cut(s)	1159
AciI	CCGC	2 cut(s)	121, 163
AcoI	YGGCCR	1 cut(s)	128
AcsI	RAATTY	3 cut(s)	366, 1186, 1277
AcuI	CTGAAG	3 cut(s)	747, 1104, 1170
AdeI	CACNNNGTG	1 cut(s)	1179
AfaI	GTAC	1 cut(s)	528
AfiI	CCNNNNNNNGG	2 cut(s)	159, 940
AgsI	TTSAA	5 cut(s)	34, 641, 922, 1010, 1276
AjnI	CCWGG	1 cut(s)	1135
AloI	GAACNNNNNNTCC	2 cut(s)	324, 356
AluBI	AGCT	6 cut(s)	80, 245, 335, 758, 767, 1124
AluI	AGCT	6 cut(s)	80, 245, 335, 758, 767, 1124
Alw21I	GWGCWC	4 cut(s)	152, 732, 982, 1208
Alw26I	GTCTC	2 cut(s)	51, 997
Alw44I	GTGCAC	3 cut(s)	728, 978, 1204
AoxI	GGCC	2 cut(s)	128, 942
ApaLI	GTGCAC	3 cut(s)	728, 978, 1204
ApeKI	GCWGC	4 cut(s)	40, 242, 335, 911
ApoI	RAATTY	3 cut(s)	366, 1186, 1277
AseI	ATTAAT	2 cut(s)	774, 864
AspS9I	GGNCC	1 cut(s)	1129
AsuC2I	CCSGG	1 cut(s)	363
AsuHPI	GGTGA	1 cut(s)	631
AvaII	GGWCC	1 cut(s)	1129
BaeGI	GKGCMC	3 cut(s)	732, 982, 1208
BanII	GRGCYC	2 cut(s)	384, 632
Bbv12I	GWGCWC	4 cut(s)	152, 732, 982, 1208
BbvI	GCAGC	4 cut(s)	27, 254, 322, 898
BccI	CCATC	4 cut(s)	127, 487, 531, 1227
BciT130I	CCWGG	1 cut(s)	1137
BciVI	GTATCC	1 cut(s)	347
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	51, 997
BfaI	CTAG	3 cut(s)	798, 983, 1230
BfmI	CTRYAG	3 cut(s)	41, 240, 684
BfuI	GTATCC	1 cut(s)	347
BisI	GCNGC	6 cut(s)	41, 122, 164, 243, 336, 912
BlsI	GCNGC	6 cut(s)	42, 123, 165, 244, 337, 913
Bme1390I	CCNGG	2 cut(s)	363, 1137
Bme18I	GGWCC	1 cut(s)	1129
BmgT120I	GGNCC	1 cut(s)	1129
BmrFI	CCNGG	2 cut(s)	363, 1137
BmrI	ACTGGG	1 cut(s)	890
BmsI	GCATC	3 cut(s)	831, 898, 964
BmuI	ACTGGG	1 cut(s)	890
BpmI	CTGGAG	2 cut(s)	136, 351
Bpu10I	CCTNAGC	1 cut(s)	1125
BpuMI	CCSGG	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	1224
BsaWI	WCCGGW	1 cut(s)	933
BsaXI	ACNNNNNCTCC	4 cut(s)	184, 214, 324, 354
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 940
Bse1I	ACTGG	1 cut(s)	885
BseBI	CCWGG	1 cut(s)	1137
BseDI	CCNNGG	1 cut(s)	1224
BseGI	GGATG	4 cut(s)	114, 411, 542, 955
BseLI	CCNNNNNNNGG	2 cut(s)	159, 940
BseMII	CTCAG	5 cut(s)	62, 289, 328, 615, 1139
BseNI	ACTGG	1 cut(s)	885
BseSI	GKGCMC	3 cut(s)	732, 982, 1208
BseXI	GCAGC	4 cut(s)	27, 254, 322, 898
BsgI	GTGCAG	1 cut(s)	160
Bsh1236I	CGCG	1 cut(s)	1159
BshFI	GGCC	2 cut(s)	130, 944
BsiHKAI	GWGCWC	4 cut(s)	152, 732, 982, 1208
BsiSI	CCGG	2 cut(s)	363, 934
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	2 cut(s)	159, 940
BsmAI	GTCTC	2 cut(s)	51, 997
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	130, 944
Bsp1286I	GDGCHC	6 cut(s)	152, 384, 632, 732, 982, 1208
Bsp143I	GATC	2 cut(s)	68, 396
Bsp68I	TCGCGA	1 cut(s)	1159
BspACI	CCGC	2 cut(s)	121, 163
BspANI	GGCC	2 cut(s)	130, 944
BspCNI	CTCAG	5 cut(s)	61, 288, 327, 616, 1138
BspFNI	CGCG	1 cut(s)	1159
BspMAI	CTGCAG	2 cut(s)	45, 244
BspQI	GCTCTTC	2 cut(s)	389, 636
BsrBI	CCGCTC	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	885
BssECI	CCNNGG	1 cut(s)	1224
BssMI	GATC	2 cut(s)	68, 396
BssNAI	GTATAC	1 cut(s)	1166
BssT1I	CCWWGG	1 cut(s)	1224
Bst1107I	GTATAC	1 cut(s)	1166
Bst2UI	CCWGG	1 cut(s)	1137
Bst4CI	ACNGT	4 cut(s)	200, 480, 502, 1133
Bst6I	CTCTTC	3 cut(s)	389, 636, 1146
BstAPI	GCANNNNNTGC	1 cut(s)	147
BstC8I	GCNNGC	3 cut(s)	555, 752, 756
BstDEI	CTNAG	7 cut(s)	48, 275, 314, 624, 854, 1089, 1125
BstF5I	GGATG	4 cut(s)	114, 411, 542, 955
BstFNI	CGCG	1 cut(s)	1159
BstKTI	GATC	2 cut(s)	71, 399
BstMAI	GTCTC	2 cut(s)	51, 997
BstMBI	GATC	2 cut(s)	68, 396
BstMWI	GCNNNNNNNGC	7 cut(s)	22, 127, 147, 169, 335, 764, 1121
BstNI	CCWGG	1 cut(s)	1137
BstSCI	CCNGG	2 cut(s)	361, 1135
BstSFI	CTRYAG	3 cut(s)	41, 240, 684
BstSLI	GKGCMC	3 cut(s)	732, 982, 1208
BstUI	CGCG	1 cut(s)	1159
BstV1I	GCAGC	4 cut(s)	27, 254, 322, 898
BstZ17I	GTATAC	1 cut(s)	1166
BsuI	GTATCC	1 cut(s)	347
BsuRI	GGCC	2 cut(s)	130, 944
BtsCI	GGATG	4 cut(s)	114, 411, 542, 955
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	3 cut(s)	91, 148, 878
BtuMI	TCGCGA	1 cut(s)	1159
Cac8I	GCNNGC	3 cut(s)	555, 752, 756
Cfr13I	GGNCC	1 cut(s)	1129
Csp6I	GTAC	1 cut(s)	527
CviAII	CATG	5 cut(s)	289, 473, 542, 735, 946
CviQI	GTAC	1 cut(s)	527
DdeI	CTNAG	7 cut(s)	48, 275, 314, 624, 854, 1089, 1125
DpnI	GATC	2 cut(s)	70, 398
DpnII	GATC	2 cut(s)	68, 396
DraIII	CACNNNGTG	1 cut(s)	1179
DrdI	GACNNNNNNGTC	1 cut(s)	289
DseDI	GACNNNNNNGTC	1 cut(s)	289
EaeI	YGGCCR	1 cut(s)	128
Eam1104I	CTCTTC	3 cut(s)	389, 636, 1146
EarI	CTCTTC	3 cut(s)	389, 636, 1146
Eco130I	CCWWGG	1 cut(s)	1224
Eco24I	GRGCYC	2 cut(s)	384, 632
Eco47I	GGWCC	1 cut(s)	1129
Eco57I	CTGAAG	3 cut(s)	747, 1104, 1170
EcoRII	CCWGG	1 cut(s)	1135
EcoT14I	CCWWGG	1 cut(s)	1224
EcoT38I	GRGCYC	2 cut(s)	384, 632
ErhI	CCWWGG	1 cut(s)	1224
FaeI	CATG	5 cut(s)	292, 476, 545, 738, 949
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	5 cut(s)	288, 472, 541, 734, 945
FauNDI	CATATG	1 cut(s)	1018
FblI	GTMKAC	1 cut(s)	1165
Fnu4HI	GCNGC	6 cut(s)	41, 122, 164, 243, 336, 912
FokI	GGATG	4 cut(s)	121, 418, 549, 942
FriOI	GRGCYC	2 cut(s)	384, 632
Fsp4HI	GCNGC	6 cut(s)	41, 122, 164, 243, 336, 912
FspBI	CTAG	3 cut(s)	798, 983, 1230
GluI	GCNGC	6 cut(s)	41, 122, 164, 243, 336, 912
GsuI	CTGGAG	2 cut(s)	136, 351
HaeIII	GGCC	2 cut(s)	130, 944
HapII	CCGG	2 cut(s)	363, 934
Hin1II	CATG	5 cut(s)	292, 476, 545, 738, 949
HinfI	GANTC	6 cut(s)	324, 788, 992, 1034, 1079, 1154
HpaII	CCGG	2 cut(s)	363, 934
HphI	GGTGA	1 cut(s)	631
Hpy166II	GTNNAC	4 cut(s)	730, 980, 1166, 1206
Hpy188I	TCNGA	6 cut(s)	51, 396, 658, 1033, 1150, 1247
Hpy188III	TCNNGA	5 cut(s)	153, 490, 959, 1127, 1158
Hpy8I	GTNNAC	4 cut(s)	730, 980, 1166, 1206
Hpy99I	CGWCG	1 cut(s)	1164
HpyAV	CCTTC	3 cut(s)	580, 934, 1066
HpyCH4III	ACNGT	4 cut(s)	200, 480, 502, 1133
HpyCH4IV	ACGT	2 cut(s)	57, 1162
HpyF10VI	GCNNNNNNNGC	7 cut(s)	22, 127, 147, 169, 335, 764, 1121
HpyF3I	CTNAG	7 cut(s)	48, 275, 314, 624, 854, 1089, 1125
HpySE526I	ACGT	2 cut(s)	57, 1162
Hsp92II	CATG	5 cut(s)	292, 476, 545, 738, 949
Kzo9I	GATC	2 cut(s)	68, 396
LguI	GCTCTTC	2 cut(s)	389, 636
LmnI	GCTCC	2 cut(s)	155, 332
Lsp1109I	GCAGC	4 cut(s)	27, 254, 322, 898
LweI	GCATC	3 cut(s)	831, 898, 964
MaeI	CTAG	3 cut(s)	798, 983, 1230
MaeII	ACGT	2 cut(s)	57, 1162
MaeIII	GTNAC	1 cut(s)	619
MalI	GATC	2 cut(s)	70, 398
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	2 cut(s)	68, 396
MboII	GAAGA	8 cut(s)	376, 565, 653, 671, 683, 949, 1088, 1163
MhlI	GDGCHC	6 cut(s)	152, 384, 632, 732, 982, 1208
MluCI	AATT	6 cut(s)	366, 592, 903, 1064, 1186, 1277
MlyI	GAGTC	3 cut(s)	333, 1001, 1163
MmeI	TCCRAC	3 cut(s)	427, 514, 603
MnlI	CCTC	7 cut(s)	186, 203, 443, 811, 900, 1015, 1117
MseI	TTAA	6 cut(s)	468, 590, 774, 864, 999, 1282
MslI	CAYNNNNRTG	1 cut(s)	950
MspA1I	CMGCKG	1 cut(s)	767
MspI	CCGG	2 cut(s)	363, 934
MspR9I	CCNGG	2 cut(s)	363, 1137
MvaI	CCWGG	1 cut(s)	1137
MvnI	CGCG	1 cut(s)	1159
MwoI	GCNNNNNNNGC	7 cut(s)	22, 127, 147, 169, 335, 764, 1121
NciI	CCSGG	1 cut(s)	363
NdeI	CATATG	1 cut(s)	1018
NdeII	GATC	2 cut(s)	68, 396
NlaIII	CATG	5 cut(s)	292, 476, 545, 738, 949
NmuCI	GTSAC	1 cut(s)	619
NruI	TCGCGA	1 cut(s)	1159
PciSI	GCTCTTC	2 cut(s)	389, 636
PfeI	GAWTC	3 cut(s)	788, 1034, 1079
PfoI	TCCNGGA	1 cut(s)	361
PkrI	GCNGC	6 cut(s)	42, 123, 165, 244, 337, 913
PleI	GAGTC	3 cut(s)	332, 1000, 1162
PpsI	GAGTC	3 cut(s)	332, 1000, 1162
PshBI	ATTAAT	2 cut(s)	774, 864
PsiI	TTATAA	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	1135
PspGI	CCWGG	1 cut(s)	1135
PspPI	GGNCC	1 cut(s)	1129
PstI	CTGCAG	2 cut(s)	45, 244
PvuII	CAGCTG	1 cut(s)	767
RruI	TCGCGA	1 cut(s)	1159
RsaI	GTAC	1 cut(s)	528
RsaNI	GTAC	1 cut(s)	527
RseI	CAYNNNNRTG	1 cut(s)	950
SapI	GCTCTTC	2 cut(s)	389, 636
SaqAI	TTAA	6 cut(s)	468, 590, 774, 864, 999, 1282
SatI	GCNGC	6 cut(s)	41, 122, 164, 243, 336, 912
Sau3AI	GATC	2 cut(s)	68, 396
Sau96I	GGNCC	1 cut(s)	1129
SchI	GAGTC	3 cut(s)	333, 1001, 1163
ScrFI	CCNGG	2 cut(s)	363, 1137
SduI	GDGCHC	6 cut(s)	152, 384, 632, 732, 982, 1208
SfaNI	GCATC	3 cut(s)	831, 898, 964
SfcI	CTRYAG	3 cut(s)	41, 240, 684
SinI	GGWCC	1 cut(s)	1129
SmiMI	CAYNNNNRTG	1 cut(s)	950
Sse9I	AATT	6 cut(s)	366, 592, 903, 1064, 1186, 1277
SsiI	CCGC	2 cut(s)	121, 163
SspI	AATATT	1 cut(s)	778
SspMI	CTAG	3 cut(s)	798, 983, 1230
StyD4I	CCNGG	2 cut(s)	361, 1135
StyI	CCWWGG	1 cut(s)	1224
TaaI	ACNGT	4 cut(s)	200, 480, 502, 1133
TaiI	ACGT	2 cut(s)	60, 1165
TaqI	TCGA	2 cut(s)	71, 746
TaqII	GACCGA	1 cut(s)	207
TasI	AATT	6 cut(s)	366, 592, 903, 1064, 1186, 1277
TatI	WGTACW	1 cut(s)	526
TauI	GCSGC	2 cut(s)	124, 166
TfiI	GAWTC	3 cut(s)	788, 1034, 1079
Tru1I	TTAA	6 cut(s)	468, 590, 774, 864, 999, 1282
Tru9I	TTAA	6 cut(s)	468, 590, 774, 864, 999, 1282
TscAI	CASTG	3 cut(s)	91, 148, 885
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	4 cut(s)	40, 242, 335, 911
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	3 cut(s)	332, 729, 888
TspGWI	ACGGA	1 cut(s)	1084
TspRI	CASTG	3 cut(s)	91, 148, 885
VneI	GTGCAC	3 cut(s)	728, 978, 1204
VpaK11BI	GGWCC	1 cut(s)	1129
VspI	ATTAAT	2 cut(s)	774, 864
XapI	RAATTY	3 cut(s)	366, 1186, 1277
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	1165
XspI	CTAG	3 cut(s)	798, 983, 1230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.