MD05G1235800.v1.1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0019780
Physical Location & Seq
Reverse (-)
36743661 .. 36746525
2865 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1235800.v1.1.491

Sequence Viewer

Length: 363 bp
ATGGAGAAAGCCTTTCTGAAAAAGCCGAAGTTTCGTCTTAATGCACCTATTCCATATGTCTTCATGTTAAGATTTCTCAAGGCTGCTCAGTCAGAAACAAAGCTTGAACACTTGGCATTCTACCTTATTGAGTTGTGCTTAGTTGAATATGAACCGTTAAGGTTCAAGCCCTCATGGCTGTGCGCAGCAGCCCTATATGTTGCAAGGTGCACCCTGCAGATTACTCCGGCTTGGACTCCGCTGCTCTGCAAACACACTCGTTATGAAGTATCCCAAATCAGAGATGGTCTTAAGATTTCACAAAGCTGCAAGAGTGGGAAGTTTGAAGGTCACATACGAAGACCTTGGACATATCAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

121

Amino Acids

14.13

Weight (kDa)

9.61

Isoelectric Point (pI)

46.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_C PF02984 16 - 98 4.3e-25 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019780)

Species Orthologous Gene IDs
malus_domestica MD05G1235800.v1.1 MD05G1236200.v1.1 MD05G1264500.v1.1
pyrus_communis pycom05g23800
rosa_chinensis RchiOBHm_Chr7g0194171
rosa_rugosa Rorug07G0114800 Rorug07G0114900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 184
AciI CCGC 1 cut(s) 239
AflII CTTAAG 1 cut(s) 290
AgsI TTSAA 4 cut(s) 107, 146, 166, 326
AluBI AGCT 2 cut(s) 103, 306
AluI AGCT 2 cut(s) 103, 306
Alw21I GWGCWC 1 cut(s) 212
Alw44I GTGCAC 1 cut(s) 208
ApaLI GTGCAC 1 cut(s) 208
ApeKI GCWGC 5 cut(s) 83, 185, 188, 241, 306
AspLEI GCGC 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 212
BarI GAAGNNNNNNTAC 2 cut(s) 318, 350
BbsI GAAGAC 2 cut(s) 52, 346
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 5 cut(s) 70, 197, 200, 228, 293
BccI CCATC 1 cut(s) 278
BciVI GTATCC 1 cut(s) 280
BfmI CTRYAG 1 cut(s) 215
BfrI CTTAAG 1 cut(s) 290
BfuI GTATCC 1 cut(s) 280
BglI GCCNNNNNGGC 1 cut(s) 175
BisI GCNGC 5 cut(s) 84, 186, 189, 242, 307
BlsI GCNGC 5 cut(s) 85, 187, 190, 243, 308
BpiI GAAGAC 2 cut(s) 52, 346
BpuEI CTTGAG 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 344
BseDI CCNNGG 1 cut(s) 344
BseMII CTCAG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 212
BseXI GCAGC 5 cut(s) 70, 197, 200, 228, 293
BsiHKAI GWGCWC 1 cut(s) 212
BsiSI CCGG 1 cut(s) 227
BsmI GAATGC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 212
BspACI CCGC 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 100
BspMAI CTGCAG 1 cut(s) 219
BspTI CTTAAG 1 cut(s) 290
BssECI CCNNGG 1 cut(s) 344
BssT1I CCWWGG 1 cut(s) 344
Bst4CI ACNGT 1 cut(s) 156
BstAFI CTTAAG 1 cut(s) 290
BstDEI CTNAG 2 cut(s) 87, 139
BstHHI GCGC 1 cut(s) 185
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstSFI CTRYAG 1 cut(s) 215
BstSLI GKGCMC 1 cut(s) 212
BstV1I GCAGC 5 cut(s) 70, 197, 200, 228, 293
BstV2I GAAGAC 2 cut(s) 52, 346
BsuI GTATCC 1 cut(s) 280
CfoI GCGC 1 cut(s) 185
CviAII CATG 2 cut(s) 64, 174
CviJI RGCY 9 cut(s) 11, 25, 83, 103, 169, 178, 191, 230, 306
CviKI_1 RGCY 9 cut(s) 11, 25, 83, 103, 169, 178, 191, 230, 306
DdeI CTNAG 2 cut(s) 87, 139
Eco130I CCWWGG 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 344
ErhI CCWWGG 1 cut(s) 344
FaeI CATG 2 cut(s) 67, 177
FatI CATG 2 cut(s) 63, 173
FauNDI CATATG 1 cut(s) 55
Fnu4HI GCNGC 5 cut(s) 84, 186, 189, 242, 307
Fsp4HI GCNGC 5 cut(s) 84, 186, 189, 242, 307
FspI TGCGCA 1 cut(s) 184
GlaI GCGC 1 cut(s) 184
GluI GCNGC 5 cut(s) 84, 186, 189, 242, 307
HapII CCGG 1 cut(s) 227
HhaI GCGC 1 cut(s) 185
Hin1II CATG 2 cut(s) 67, 177
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 1 cut(s) 235
HpaII CCGG 1 cut(s) 227
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 3 cut(s) 18, 94, 281
Hpy8I GTNNAC 1 cut(s) 210
HpyAV CCTTC 1 cut(s) 320
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4V TGCA 6 cut(s) 44, 203, 210, 217, 249, 309
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 2 cut(s) 87, 139
Hsp92II CATG 2 cut(s) 67, 177
HspAI GCGC 1 cut(s) 183
LpnPI CCDG 2 cut(s) 227, 240
Lsp1109I GCAGC 5 cut(s) 70, 197, 200, 228, 293
MaeIII GTNAC 1 cut(s) 329
MboII GAAGA 2 cut(s) 52, 351
MhlI GDGCHC 1 cut(s) 212
MlyI GAGTC 1 cut(s) 229
MnlI CCTC 1 cut(s) 181
MseI TTAA 4 cut(s) 39, 68, 158, 291
MslI CAYNNNNRTG 1 cut(s) 178
MspA1I CMGCKG 1 cut(s) 241
MspCI CTTAAG 1 cut(s) 290
MspI CCGG 1 cut(s) 227
Mva1269I GAATGC 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 175
NdeI CATATG 1 cut(s) 55
NlaIII CATG 2 cut(s) 67, 177
NmuCI GTSAC 1 cut(s) 329
NsbI TGCGCA 1 cut(s) 184
PctI GAATGC 1 cut(s) 116
PkrI GCNGC 5 cut(s) 85, 187, 190, 243, 308
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
PstI CTGCAG 1 cut(s) 219
RseI CAYNNNNRTG 1 cut(s) 178
SaqAI TTAA 4 cut(s) 39, 68, 158, 291
SatI GCNGC 5 cut(s) 84, 186, 189, 242, 307
SchI GAGTC 1 cut(s) 229
SduI GDGCHC 1 cut(s) 212
SetI ASST 8 cut(s) 49, 105, 126, 164, 209, 308, 331, 346
SfcI CTRYAG 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 178
SmlI CTYRAG 2 cut(s) 77, 290
SmoI CTYRAG 2 cut(s) 77, 290
SsiI CCGC 1 cut(s) 239
StyI CCWWGG 1 cut(s) 344
TaaI ACNGT 1 cut(s) 156
Tru1I TTAA 4 cut(s) 39, 68, 158, 291
Tru9I TTAA 4 cut(s) 39, 68, 158, 291
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 5 cut(s) 83, 185, 188, 241, 306
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 3 cut(s) 52, 165, 279
Vha464I CTTAAG 1 cut(s) 290
VneI GTGCAC 1 cut(s) 208
XcmI CCANNNNNNNNNTGG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.