pycom05g23800

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0019780
Physical Location & Seq
Forward (+)
25552851 .. 25553331
481 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g23800.1

Sequence Viewer

Length: 240 bp
ATGGTGACATTGCTCGATCAACATCTTTCCCAAGTTACAATTAAGAAGGATGACATGCAGTTAGTTGGTATCACTGCACTCTTGTTGGCATCAAAATATGAGGACTTTTGGCATCCAAGGGTAAATATCAATATCTCAACTCATATGCATTTTTTTACTCGGATTAATTCAACCTACTCCATATGTCTTCATGTTAAGATTTCTCAAGGCTGCTCAGTCAGAAACAAAGGCATTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

80

Amino Acids

9.09

Weight (kDa)

9.14

Isoelectric Point (pI)

30.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 2 - 42 7.7e-10 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019780)

Species Orthologous Gene IDs
malus_domestica MD05G1235800.v1.1 MD05G1236200.v1.1 MD05G1264500.v1.1
pyrus_communis pycom05g23800
rosa_chinensis RchiOBHm_Chr7g0194171
rosa_rugosa Rorug07G0114800 Rorug07G0114900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 171
ApeKI GCWGC 1 cut(s) 210
AseI ATTAAT 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 197
BisI GCNGC 1 cut(s) 211
BlsI GCNGC 1 cut(s) 212
BmsI GCATC 2 cut(s) 98, 121
BpiI GAAGAC 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 189
BsaBI GATNNNNATC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 116
Bse3DI GCAATG 1 cut(s) 8
Bse8I GATNNNNATC 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 116
BseGI GGATG 2 cut(s) 55, 112
BseJI GATNNNNATC 1 cut(s) 21
BseMI GCAATG 1 cut(s) 8
BseMII CTCAG 1 cut(s) 228
BseXI GCAGC 1 cut(s) 197
BsgI GTGCAG 1 cut(s) 60
BsmI GAATGC 1 cut(s) 231
Bsp143I GATC 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 8
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 116
BstDEI CTNAG 1 cut(s) 214
BstF5I GGATG 2 cut(s) 55, 112
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstNSI RCATGY 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 197
BstV2I GAAGAC 1 cut(s) 179
BtsCI GGATG 2 cut(s) 55, 112
BtsI GCAGTG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 72
CviAII CATG 2 cut(s) 55, 191
CviJI RGCY 1 cut(s) 210
CviKI_1 RGCY 1 cut(s) 210
DdeI CTNAG 1 cut(s) 214
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 116
EcoT22I ATGCAT 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 116
FaeI CATG 2 cut(s) 58, 194
FaiI YATR 7 cut(s) 56, 99, 144, 146, 182, 184, 192
FatI CATG 2 cut(s) 54, 190
FauNDI CATATG 2 cut(s) 144, 182
Fnu4HI GCNGC 1 cut(s) 211
FokI GGATG 2 cut(s) 62, 99
Fsp4HI GCNGC 1 cut(s) 211
GluI GCNGC 1 cut(s) 211
Hin1II CATG 2 cut(s) 58, 194
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 162, 221
HpyAV CCTTC 1 cut(s) 40
HpyCH4V TGCA 3 cut(s) 58, 77, 148
HpyF3I CTNAG 1 cut(s) 214
Hsp92II CATG 2 cut(s) 58, 194
Kzo9I GATC 1 cut(s) 16
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 2 cut(s) 98, 121
MaeIII GTNAC 2 cut(s) 4, 34
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 1 cut(s) 179
MluCI AATT 2 cut(s) 39, 166
MnlI CCTC 1 cut(s) 94
Mph1103I ATGCAT 1 cut(s) 150
MseI TTAA 3 cut(s) 42, 165, 195
Mva1269I GAATGC 1 cut(s) 231
NdeI CATATG 2 cut(s) 144, 182
NdeII GATC 1 cut(s) 16
NlaIII CATG 2 cut(s) 58, 194
NmuCI GTSAC 1 cut(s) 4
NsiI ATGCAT 1 cut(s) 150
NspI RCATGY 1 cut(s) 58
PctI GAATGC 1 cut(s) 231
PkrI GCNGC 1 cut(s) 212
PshBI ATTAAT 1 cut(s) 165
SaqAI TTAA 3 cut(s) 42, 165, 195
SatI GCNGC 1 cut(s) 211
Sau3AI GATC 1 cut(s) 16
SetI ASST 1 cut(s) 176
SfaNI GCATC 2 cut(s) 98, 121
SgeI CNNG 8 cut(s) 26, 44, 67, 94, 129, 171, 203, 218
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
Sse9I AATT 2 cut(s) 39, 166
StyI CCWWGG 1 cut(s) 116
TaqI TCGA 1 cut(s) 15
TasI AATT 2 cut(s) 39, 166
Tru1I TTAA 3 cut(s) 42, 165, 195
Tru9I TTAA 3 cut(s) 42, 165, 195
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 1 cut(s) 210
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 179
TspRI CASTG 1 cut(s) 79
VspI ATTAAT 1 cut(s) 165
XceI RCATGY 1 cut(s) 58
Zsp2I ATGCAT 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.