MD05G1264500.v1.1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0019780
Physical Location & Seq
Forward (+)
39962647 .. 39963958
1312 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1264500.v1.1.491

Sequence Viewer

Length: 426 bp
ATGAATAATGCTGCATTCTATAGTTCCCTTTTCGCTTGTCCTAAAATAAACACCGTCTTTGCTTTTCAGGAGAAAACCTTTCTGAAAAAGCTGAAGTTTCGTCTTAATGCACCTACTCCATATGTCTCCATGTTAAGATTTCTCAAGGCTGCTCGGTCAGAAACAAAGGAAGCGTTAAGGTTCAAGCCCTCTTTTCTGTGCGCAGCAGCCCTATCTGTCGCAAGGTGCACCCTGCAGATTACTCCGGCTTGGACCCCGCTCGTTACGAAGTATCCCAAATCAGAGATGCTCTTAAGATTTCACAAAGCTGCAAGAGTGGGAAGCTTGAAGGTCACATACGAAAAGTACTCTAGCCCTGATCTCAGTGGTGTTGCAGCGATAAAACCATTGAAGACGCTTCCACTCCGATTCATCTTAGAGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

142

Amino Acids

15.87

Weight (kDa)

10.18

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_C PF02984 57 - 129 6.1e-08 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019780)

Species Orthologous Gene IDs
malus_domestica MD05G1235800.v1.1 MD05G1236200.v1.1 MD05G1264500.v1.1
pyrus_communis pycom05g23800
rosa_chinensis RchiOBHm_Chr7g0194171
rosa_rugosa Rorug07G0114800 Rorug07G0114900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 202
AccBSI CCGCTC 1 cut(s) 259
AciI CCGC 1 cut(s) 257
AcuI CTGAAG 1 cut(s) 113
AfaI GTAC 1 cut(s) 347
AflII CTTAAG 1 cut(s) 292
AgsI TTSAA 3 cut(s) 184, 328, 391
AluBI AGCT 3 cut(s) 91, 308, 324
AluI AGCT 3 cut(s) 91, 308, 324
Alw21I GWGCWC 1 cut(s) 230
Alw26I GTCTC 1 cut(s) 130
Alw44I GTGCAC 1 cut(s) 226
ApaLI GTGCAC 1 cut(s) 226
ApeKI GCWGC 6 cut(s) 11, 149, 203, 206, 308, 374
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 252
AvaII GGWCC 1 cut(s) 252
BaeGI GKGCMC 1 cut(s) 230
BarI GAAGNNNNNNTAC 2 cut(s) 320, 352
BbsI GAAGAC 1 cut(s) 398
Bbv12I GWGCWC 1 cut(s) 230
BbvI GCAGC 5 cut(s) 136, 215, 218, 295, 386
BciVI GTATCC 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 130
BfaI CTAG 1 cut(s) 351
BfmI CTRYAG 2 cut(s) 19, 233
BfrI CTTAAG 1 cut(s) 292
BfuI GTATCC 1 cut(s) 282
BisI GCNGC 6 cut(s) 12, 150, 204, 207, 309, 375
BlsI GCNGC 6 cut(s) 13, 151, 205, 208, 310, 376
BmcAI AGTACT 1 cut(s) 347
Bme18I GGWCC 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 254
BmsI GCATC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 376
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 5 cut(s) 136, 215, 218, 295, 386
BsiHKAI GWGCWC 1 cut(s) 230
BsiSI CCGG 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 130
BsmI GAATGC 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 1 cut(s) 358
BspACI CCGC 1 cut(s) 257
BspCNI CTCAG 1 cut(s) 375
BspLI GGNNCC 1 cut(s) 254
BspMAI CTGCAG 1 cut(s) 237
BspTI CTTAAG 1 cut(s) 292
BsrBI CCGCTC 1 cut(s) 259
BssMI GATC 1 cut(s) 358
Bst4CI ACNGT 1 cut(s) 55
BstAFI CTTAAG 1 cut(s) 292
BstDEI CTNAG 2 cut(s) 362, 415
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 1 cut(s) 361
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 1 cut(s) 358
BstSFI CTRYAG 2 cut(s) 19, 233
BstSLI GKGCMC 1 cut(s) 230
BstV1I GCAGC 5 cut(s) 136, 215, 218, 295, 386
BstV2I GAAGAC 1 cut(s) 398
BsuI GTATCC 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 370
CfoI GCGC 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 252
CseI GACGC 1 cut(s) 403
Csp6I GTAC 1 cut(s) 346
CviAII CATG 1 cut(s) 130
CviJI RGCY 8 cut(s) 91, 149, 187, 209, 248, 308, 324, 354
CviKI_1 RGCY 8 cut(s) 91, 149, 187, 209, 248, 308, 324, 354
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 2 cut(s) 362, 415
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
Eco47I GGWCC 1 cut(s) 252
Eco57I CTGAAG 1 cut(s) 113
FaeI CATG 1 cut(s) 133
FaiI YATR 5 cut(s) 21, 121, 123, 131, 337
FatI CATG 1 cut(s) 129
FauI CCCGC 1 cut(s) 264
FauNDI CATATG 1 cut(s) 121
Fnu4HI GCNGC 6 cut(s) 12, 150, 204, 207, 309, 375
Fsp4HI GCNGC 6 cut(s) 12, 150, 204, 207, 309, 375
FspBI CTAG 1 cut(s) 351
FspI TGCGCA 1 cut(s) 202
GlaI GCGC 1 cut(s) 202
GluI GCNGC 6 cut(s) 12, 150, 204, 207, 309, 375
HapII CCGG 1 cut(s) 245
HgaI GACGC 1 cut(s) 403
HhaI GCGC 1 cut(s) 203
Hin1II CATG 1 cut(s) 133
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HindIII AAGCTT 1 cut(s) 322
HinfI GANTC 1 cut(s) 408
HpaII CCGG 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 228
Hpy188I TCNGA 4 cut(s) 84, 160, 283, 407
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 1 cut(s) 228
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 6 cut(s) 14, 110, 228, 235, 311, 374
HpyF3I CTNAG 2 cut(s) 362, 415
Hsp92II CATG 1 cut(s) 133
HspAI GCGC 1 cut(s) 201
Kzo9I GATC 1 cut(s) 358
LpnPI CCDG 4 cut(s) 53, 245, 258, 369
Lsp1109I GCAGC 5 cut(s) 136, 215, 218, 295, 386
LweI GCATC 1 cut(s) 276
MaeI CTAG 1 cut(s) 351
MaeIII GTNAC 2 cut(s) 262, 331
MalI GATC 1 cut(s) 360
MbiI CCGCTC 1 cut(s) 259
MboI GATC 1 cut(s) 358
MboII GAAGA 1 cut(s) 403
MhlI GDGCHC 1 cut(s) 230
MnlI CCTC 2 cut(s) 199, 412
MseI TTAA 4 cut(s) 105, 134, 176, 293
MspCI CTTAAG 1 cut(s) 292
MspI CCGG 1 cut(s) 245
Mva1269I GAATGC 1 cut(s) 14
NdeI CATATG 1 cut(s) 121
NdeII GATC 1 cut(s) 358
NlaIII CATG 1 cut(s) 133
NlaIV GGNNCC 1 cut(s) 254
NmuCI GTSAC 1 cut(s) 331
NsbI TGCGCA 1 cut(s) 202
PctI GAATGC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 408
PkrI GCNGC 6 cut(s) 13, 151, 205, 208, 310, 376
PspN4I GGNNCC 1 cut(s) 254
PspPI GGNCC 1 cut(s) 252
PstI CTGCAG 1 cut(s) 237
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SaqAI TTAA 4 cut(s) 105, 134, 176, 293
SatI GCNGC 6 cut(s) 12, 150, 204, 207, 309, 375
Sau3AI GATC 1 cut(s) 358
Sau96I GGNCC 1 cut(s) 252
ScaI AGTACT 1 cut(s) 347
SduI GDGCHC 1 cut(s) 230
SetI ASST 8 cut(s) 80, 93, 115, 182, 227, 310, 326, 333
SfaNI GCATC 1 cut(s) 276
SfcI CTRYAG 2 cut(s) 19, 233
SinI GGWCC 1 cut(s) 252
SmlI CTYRAG 2 cut(s) 143, 292
SmoI CTYRAG 2 cut(s) 143, 292
SsiI CCGC 1 cut(s) 257
SspMI CTAG 1 cut(s) 351
TaaI ACNGT 1 cut(s) 55
TaqII GACCGA 1 cut(s) 144
TatI WGTACW 1 cut(s) 345
TfiI GAWTC 1 cut(s) 408
Tru1I TTAA 4 cut(s) 105, 134, 176, 293
Tru9I TTAA 4 cut(s) 105, 134, 176, 293
TscAI CASTG 1 cut(s) 370
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 6 cut(s) 11, 149, 203, 206, 308, 374
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 2 cut(s) 17, 400
TspRI CASTG 1 cut(s) 370
Vha464I CTTAAG 1 cut(s) 292
VneI GTGCAC 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 252
XspI CTAG 1 cut(s) 351
ZrmI AGTACT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.