Rorug07G0114800

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0019780
Physical Location & Seq
Forward (+)
8947320 .. 8947763
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0114800.1

Sequence Viewer

Length: 444 bp
ATGCTATTGGGGTTACCCTTCTCAGATGACTTGAAGATCTTGTCTCTCCGCAAGGATGTTGGTCTACGTCCTGATGAGGTTGAATTCATTACCAGGGTGGTTACACTGCTGCTGCAGAAAAGTTATAGTCAGTTGATTTCCACTCCAGCTGTAAAACCAATATTGACTGGTTTAAAAGAGGTTCTTTATCCCAACTTAAAGGCAAAGAAGGATATTATTGGCTACAACCTTGCAGCAATGAATCATATCAAGCAATTGCATGATTCAAGATCAAATGCACCACTTCCAGATGCAATCTCCAAGCGTGGTGTAGGTGCAAGTTGGTATGCGAAGACAGAAGAAGGTAAACGTAAAAAAGTTCGAACATGTGAACCGACGTCTGAAATTAGGCCTGGCAACGGAGAGGGTTTGTGCGGGTTTTTAATGGAGCGGTTTGGCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

147

Amino Acids

16.32

Weight (kDa)

9.52

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Utp12 PF04003 2 - 85 1.4e-09 Dip2/Utp12 Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019780)

Species Orthologous Gene IDs
malus_domestica MD05G1235800.v1.1 MD05G1236200.v1.1 MD05G1264500.v1.1
pyrus_communis pycom05g23800
rosa_chinensis RchiOBHm_Chr7g0194171
rosa_rugosa Rorug07G0114800 Rorug07G0114900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 380
AccBSI CCGCTC 1 cut(s) 430
AccI GTMKAC 1 cut(s) 64
AciI CCGC 3 cut(s) 49, 414, 430
AcsI RAATTY 1 cut(s) 83
AcyI GRCGYC 1 cut(s) 377
AfiI CCNNNNNNNGG 1 cut(s) 398
AflIII ACRYGT 1 cut(s) 365
AgsI TTSAA 3 cut(s) 34, 83, 267
AjnI CCWGG 2 cut(s) 92, 391
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 48
AoxI GGCC 1 cut(s) 389
ApeKI GCWGC 3 cut(s) 109, 112, 233
ApoI RAATTY 1 cut(s) 83
AsuII TTCGAA 1 cut(s) 361
BbsI GAAGAC 1 cut(s) 338
BbvI GCAGC 3 cut(s) 96, 99, 245
BciT130I CCWGG 2 cut(s) 94, 393
BcoDI GTCTC 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 113
BglII AGATCT 1 cut(s) 36
BisI GCNGC 3 cut(s) 110, 113, 234
BlsI GCNGC 3 cut(s) 111, 114, 235
Bme1390I CCNGG 2 cut(s) 94, 393
BmrFI CCNGG 2 cut(s) 94, 393
BmsI GCATC 1 cut(s) 280
BpiI GAAGAC 1 cut(s) 338
BpmI CTGGAG 1 cut(s) 129
Bpu14I TTCGAA 1 cut(s) 361
BsaHI GRCGYC 1 cut(s) 377
BsaJI CCNNGG 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 398
Bse1I ACTGG 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 243
BseBI CCWGG 2 cut(s) 94, 393
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMI GCAATG 1 cut(s) 243
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 172
BseXI GCAGC 3 cut(s) 96, 99, 245
BshFI GGCC 1 cut(s) 391
BslI CCNNNNNNNGG 1 cut(s) 398
BsmAI GTCTC 1 cut(s) 48
BsnI GGCC 1 cut(s) 391
Bsp119I TTCGAA 1 cut(s) 361
Bsp143I GATC 2 cut(s) 36, 269
BspACI CCGC 3 cut(s) 49, 414, 430
BspANI GGCC 1 cut(s) 391
BspCNI CTCAG 1 cut(s) 35
BspMAI CTGCAG 1 cut(s) 117
BspT104I TTCGAA 1 cut(s) 361
BsrBI CCGCTC 1 cut(s) 430
BsrDI GCAATG 1 cut(s) 243
BsrI ACTGG 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 2 cut(s) 36, 269
BssNI GRCGYC 1 cut(s) 377
Bst2UI CCWGG 2 cut(s) 94, 393
BstACI GRCGYC 1 cut(s) 377
BstBI TTCGAA 1 cut(s) 361
BstDEI CTNAG 1 cut(s) 22
BstEII GGTNACC 1 cut(s) 12
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 2 cut(s) 39, 272
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 2 cut(s) 36, 269
BstNI CCWGG 2 cut(s) 94, 393
BstNSI RCATGY 1 cut(s) 369
BstPI GGTNACC 1 cut(s) 12
BstSCI CCNGG 2 cut(s) 92, 391
BstSFI CTRYAG 1 cut(s) 113
BstV1I GCAGC 3 cut(s) 96, 99, 245
BstV2I GAAGAC 1 cut(s) 338
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 1 cut(s) 391
BtsCI GGATG 1 cut(s) 61
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 104
CviAII CATG 2 cut(s) 260, 366
CviJI RGCY 3 cut(s) 149, 222, 391
CviKI_1 RGCY 3 cut(s) 149, 222, 391
DdeI CTNAG 1 cut(s) 22
DpnI GATC 2 cut(s) 38, 271
DpnII GATC 2 cut(s) 36, 269
DraI TTTAAA 1 cut(s) 174
Eco147I AGGCCT 1 cut(s) 391
Eco91I GGTNACC 1 cut(s) 12
EcoO65I GGTNACC 1 cut(s) 12
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 2 cut(s) 92, 391
FaeI CATG 2 cut(s) 263, 369
FaiI YATR 6 cut(s) 126, 246, 261, 327, 367, 442
FalI AAGNNNNNCTT 2 cut(s) 168, 200
FatI CATG 2 cut(s) 259, 365
FauI CCCGC 1 cut(s) 407
FblI GTMKAC 1 cut(s) 64
Fnu4HI GCNGC 3 cut(s) 110, 113, 234
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 3 cut(s) 110, 113, 234
GluI GCNGC 3 cut(s) 110, 113, 234
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 1 cut(s) 391
Hin1I GRCGYC 1 cut(s) 377
Hin1II CATG 2 cut(s) 263, 369
HinfI GANTC 2 cut(s) 241, 263
Hpy166II GTNNAC 3 cut(s) 65, 347, 371
Hpy188I TCNGA 2 cut(s) 25, 382
Hpy188III TCNNGA 3 cut(s) 71, 267, 287
Hpy8I GTNNAC 3 cut(s) 65, 347, 371
Hpy99I CGWCG 1 cut(s) 379
HpyAV CCTTC 3 cut(s) 28, 202, 335
HpyCH4IV ACGT 3 cut(s) 67, 349, 377
HpyCH4V TGCA 6 cut(s) 115, 233, 259, 278, 293, 317
HpyF3I CTNAG 1 cut(s) 22
HpySE526I ACGT 3 cut(s) 67, 349, 377
Hsp92I GRCGYC 1 cut(s) 377
Hsp92II CATG 2 cut(s) 263, 369
Kzo9I GATC 2 cut(s) 36, 269
LmnI GCTCC 1 cut(s) 427
LpnPI CCDG 8 cut(s) 79, 84, 106, 153, 159, 300, 378, 405
Lsp1109I GCAGC 3 cut(s) 96, 99, 245
LweI GCATC 1 cut(s) 280
MaeII ACGT 3 cut(s) 67, 349, 377
MaeIII GTNAC 2 cut(s) 12, 100
MalI GATC 2 cut(s) 38, 271
MbiI CCGCTC 1 cut(s) 430
MboI GATC 2 cut(s) 36, 269
MboII GAAGA 3 cut(s) 46, 343, 350
MfeI CAATTG 1 cut(s) 254
MflI RGATCY 1 cut(s) 36
MluCI AATT 3 cut(s) 83, 254, 384
MnlI CCTC 3 cut(s) 70, 172, 397
MseI TTAA 3 cut(s) 173, 197, 422
MspA1I CMGCKG 1 cut(s) 149
MspR9I CCNGG 2 cut(s) 94, 393
MunI CAATTG 1 cut(s) 254
MvaI CCWGG 2 cut(s) 94, 393
NdeII GATC 2 cut(s) 36, 269
NlaIII CATG 2 cut(s) 263, 369
NspI RCATGY 1 cut(s) 369
NspV TTCGAA 1 cut(s) 361
PceI AGGCCT 1 cut(s) 391
PciI ACATGT 1 cut(s) 365
PfeI GAWTC 2 cut(s) 241, 263
PkrI GCNGC 3 cut(s) 111, 114, 235
PscI ACATGT 1 cut(s) 365
Psp6I CCWGG 2 cut(s) 92, 391
PspEI GGTNACC 1 cut(s) 12
PspGI CCWGG 2 cut(s) 92, 391
PstI CTGCAG 1 cut(s) 117
PsuI RGATCY 1 cut(s) 36
PvuII CAGCTG 1 cut(s) 149
SaqAI TTAA 3 cut(s) 173, 197, 422
SatI GCNGC 3 cut(s) 110, 113, 234
Sau3AI GATC 2 cut(s) 36, 269
ScrFI CCNGG 2 cut(s) 94, 393
SetI ASST 9 cut(s) 70, 81, 151, 183, 231, 316, 346, 352, 380
SfaNI GCATC 1 cut(s) 280
SfcI CTRYAG 1 cut(s) 113
SfuI TTCGAA 1 cut(s) 361
Sse9I AATT 3 cut(s) 83, 254, 384
SseBI AGGCCT 1 cut(s) 391
SsiI CCGC 3 cut(s) 49, 414, 430
SspI AATATT 1 cut(s) 162
StuI AGGCCT 1 cut(s) 391
StyD4I CCNGG 2 cut(s) 92, 391
TaiI ACGT 3 cut(s) 70, 352, 380
TaqI TCGA 1 cut(s) 361
TasI AATT 3 cut(s) 83, 254, 384
TfiI GAWTC 2 cut(s) 241, 263
Tru1I TTAA 3 cut(s) 173, 197, 422
Tru9I TTAA 3 cut(s) 173, 197, 422
TscAI CASTG 1 cut(s) 111
TseI GCWGC 3 cut(s) 109, 112, 233
TspDTI ATGAA 2 cut(s) 76, 254
TspGWI ACGGA 1 cut(s) 414
TspRI CASTG 1 cut(s) 111
XapI RAATTY 1 cut(s) 83
XceI RCATGY 1 cut(s) 369
XmiI GTMKAC 1 cut(s) 64
ZraI GACGTC 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.