MD05G1236200.v1.1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0019780
Physical Location & Seq
Reverse (-)
36766564 .. 36771824
5261 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1236200.v1.1.491

Sequence Viewer

Length: 762 bp
ATGACGACTGCAATCAACCGGAAGTTTCCGATTATGTTGATGAGATCTATCAGTATTACTTCTGAGGCACAGAATCAACCTCCAGAAAATTTCATGTCGATTCAGGCAGACATTGCTCCTCATATGCGAGGCATATTGGTCAACTGGTTAATTGAAGTACACTACAAATTCGAGTTAATGCAAGAAACTCTTTATCTCATGGTGACATTGCTTGATCAATATCTTTCCCAAGTCACAATTAAGAAGGATGACATGCAGTTAATTGGTCTCACTGCACTCTTGTTGGCATCAAAGTATGAGGACTTTTGGCATCCAAGGGTCAAAGATAGCATCTCAGCTGAGACATACACGAGAGCACAGGTGCTTGGAATGCTTGAACACTTGGCATTCTACCTTATCGAGTTGTGCTTAGTTGAATATGAACCGTTAAGGTTCAAGCCCTCGTTGCTGTGCGCAGCAGCAGCCCTATATGTTGCAAGGTGCACCCTGCAGATTACTCCGGCTTGGACTCCGCTGCTCTGCAAACACACTCGTTATGAAACTGCAGAGATGGTCTTAATATTTCACAAAGCTGCAAGAGTGGGAAGTTTGAAGGTCACATATGAAAAGTACTCTAGCCTTGATCTCAGAGGTGTTGCAGCGATAAAACCATTGGAGACGCTTCCACTTCGATTCAGCTCAGGGCTGGTTTGGTATTGCTGTGCTTTGAAAAAAAGCTGCTGTGAGAATAAGTGGCTGTGCTGTGAGAATAAGCGGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

254

Amino Acids

29.13

Weight (kDa)

8.46

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 19 - 128 2.3e-31 Cyclin, N-terminal domain
Cyclin_C PF02984 124 - 217 1e-17 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019780)

Species Orthologous Gene IDs
malus_domestica MD05G1235800.v1.1 MD05G1236200.v1.1 MD05G1264500.v1.1
pyrus_communis pycom05g23800
rosa_chinensis RchiOBHm_Chr7g0194171
rosa_rugosa Rorug07G0114800 Rorug07G0114900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 454
AciI CCGC 2 cut(s) 512, 754
AcsI RAATTY 2 cut(s) 88, 167
AfaI GTAC 2 cut(s) 159, 611
AgsI TTSAA 6 cut(s) 155, 377, 416, 436, 592, 709
AluBI AGCT 4 cut(s) 338, 572, 678, 717
AluI AGCT 4 cut(s) 338, 572, 678, 717
Alw21I GWGCWC 2 cut(s) 358, 485
Alw26I GTCTC 3 cut(s) 272, 335, 650
Alw44I GTGCAC 1 cut(s) 481
ApaLI GTGCAC 1 cut(s) 481
ApeKI GCWGC 7 cut(s) 455, 458, 461, 514, 572, 638, 717
ApoI RAATTY 2 cut(s) 88, 167
AspLEI GCGC 1 cut(s) 455
AsuHPI GGTGA 1 cut(s) 214
BaeGI GKGCMC 1 cut(s) 485
BauI CACGAG 1 cut(s) 349
Bbv12I GWGCWC 2 cut(s) 358, 485
BbvI GCAGC 7 cut(s) 467, 470, 473, 501, 559, 650, 704
BccI CCATC 1 cut(s) 544
BclI TGATCA 1 cut(s) 214
BcoDI GTCTC 3 cut(s) 272, 335, 650
BfaI CTAG 1 cut(s) 615
BfmI CTRYAG 2 cut(s) 488, 543
BglII AGATCT 1 cut(s) 44
BisI GCNGC 8 cut(s) 456, 459, 462, 515, 573, 639, 718, 755
BlsI GCNGC 8 cut(s) 457, 460, 463, 516, 574, 640, 719, 756
BmcAI AGTACT 1 cut(s) 611
BmsI GCATC 3 cut(s) 296, 319, 339
BpmI CTGGAG 1 cut(s) 66
Bpu10I CCTNAGC 1 cut(s) 679
BsaBI GATNNNNATC 1 cut(s) 219
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 314
BsaWI WCCGGW 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 149
Bse3DI GCAATG 2 cut(s) 111, 206
Bse8I GATNNNNATC 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 314
BseGI GGATG 2 cut(s) 253, 310
BseJI GATNNNNATC 1 cut(s) 219
BseMI GCAATG 2 cut(s) 111, 206
BseMII CTCAG 5 cut(s) 54, 330, 348, 640, 693
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 485
BseXI GCAGC 7 cut(s) 467, 470, 473, 501, 559, 650, 704
BsgI GTGCAG 1 cut(s) 258
BsiHKAI GWGCWC 2 cut(s) 358, 485
BsiSI CCGG 2 cut(s) 19, 500
BsmAI GTCTC 3 cut(s) 272, 335, 650
BsmBI CGTCTC 1 cut(s) 650
BsmI GAATGC 2 cut(s) 375, 386
Bso31I GGTCTC 1 cut(s) 272
Bsp1286I GDGCHC 2 cut(s) 358, 485
Bsp143I GATC 3 cut(s) 44, 214, 622
BspACI CCGC 2 cut(s) 512, 754
BspCNI CTCAG 5 cut(s) 55, 331, 347, 639, 692
BspMAI CTGCAG 2 cut(s) 492, 547
BspTNI GGTCTC 1 cut(s) 272
BsrDI GCAATG 2 cut(s) 111, 206
BsrI ACTGG 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 314
BssMI GATC 3 cut(s) 44, 214, 622
BssSI CACGAG 1 cut(s) 349
BssT1I CCWWGG 1 cut(s) 314
Bst2BI CACGAG 1 cut(s) 349
Bst4CI ACNGT 1 cut(s) 426
BstAPI GCANNNNNTGC 1 cut(s) 113
BstDEI CTNAG 6 cut(s) 63, 334, 339, 409, 626, 679
BstF5I GGATG 2 cut(s) 253, 310
BstHHI GCGC 1 cut(s) 455
BstKTI GATC 3 cut(s) 47, 217, 625
BstMAI GTCTC 3 cut(s) 272, 335, 650
BstMBI GATC 3 cut(s) 44, 214, 622
BstMWI GCNNNNNNNGC 4 cut(s) 113, 370, 445, 461
BstNSI RCATGY 1 cut(s) 256
BstSFI CTRYAG 2 cut(s) 488, 543
BstSLI GKGCMC 1 cut(s) 485
BstV1I GCAGC 7 cut(s) 467, 470, 473, 501, 559, 650, 704
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BtsCI GGATG 2 cut(s) 253, 310
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 270
CfoI GCGC 1 cut(s) 455
CseI GACGC 1 cut(s) 667
Csp6I GTAC 2 cut(s) 158, 610
CviAII CATG 3 cut(s) 94, 199, 253
CviQI GTAC 2 cut(s) 158, 610
DdeI CTNAG 6 cut(s) 63, 334, 339, 409, 626, 679
DpnI GATC 3 cut(s) 46, 216, 624
DpnII GATC 3 cut(s) 44, 214, 622
Eco130I CCWWGG 1 cut(s) 314
Eco31I GGTCTC 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 314
ErhI CCWWGG 1 cut(s) 314
Esp3I CGTCTC 1 cut(s) 650
FaeI CATG 3 cut(s) 97, 202, 256
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FatI CATG 3 cut(s) 93, 198, 252
FauNDI CATATG 2 cut(s) 123, 601
FbaI TGATCA 1 cut(s) 214
Fnu4HI GCNGC 8 cut(s) 456, 459, 462, 515, 573, 639, 718, 755
FokI GGATG 2 cut(s) 260, 297
Fsp4HI GCNGC 8 cut(s) 456, 459, 462, 515, 573, 639, 718, 755
FspBI CTAG 1 cut(s) 615
FspI TGCGCA 1 cut(s) 454
GlaI GCGC 1 cut(s) 454
GluI GCNGC 8 cut(s) 456, 459, 462, 515, 573, 639, 718, 755
GsuI CTGGAG 1 cut(s) 66
HapII CCGG 2 cut(s) 19, 500
HgaI GACGC 1 cut(s) 667
HhaI GCGC 1 cut(s) 455
Hin1II CATG 3 cut(s) 97, 202, 256
Hin6I GCGC 1 cut(s) 453
HinP1I GCGC 1 cut(s) 453
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 4 cut(s) 73, 100, 508, 672
HpaII CCGG 2 cut(s) 19, 500
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 3 cut(s) 142, 160, 483
Hpy188I TCNGA 3 cut(s) 30, 64, 629
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 3 cut(s) 142, 160, 483
HpyAV CCTTC 2 cut(s) 238, 586
HpyCH4III ACNGT 1 cut(s) 426
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 370, 445, 461
HpyF3I CTNAG 6 cut(s) 63, 334, 339, 409, 626, 679
Hsp92II CATG 3 cut(s) 97, 202, 256
HspAI GCGC 1 cut(s) 453
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 3 cut(s) 44, 214, 622
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 9 cut(s) 32, 89, 96, 130, 344, 500, 513, 666, 671
Lsp1109I GCAGC 7 cut(s) 467, 470, 473, 501, 559, 650, 704
LweI GCATC 3 cut(s) 296, 319, 339
MaeI CTAG 1 cut(s) 615
MaeIII GTNAC 3 cut(s) 202, 232, 595
MalI GATC 3 cut(s) 46, 216, 624
MboI GATC 3 cut(s) 44, 214, 622
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 2 cut(s) 358, 485
MluCI AATT 5 cut(s) 88, 150, 167, 237, 261
MlyI GAGTC 1 cut(s) 502
MnlI CCTC 7 cut(s) 58, 90, 122, 129, 292, 451, 623
MseI TTAA 6 cut(s) 149, 176, 240, 260, 428, 557
MspA1I CMGCKG 2 cut(s) 338, 514
MspI CCGG 2 cut(s) 19, 500
Mva1269I GAATGC 2 cut(s) 375, 386
MwoI GCNNNNNNNGC 4 cut(s) 113, 370, 445, 461
NdeI CATATG 2 cut(s) 123, 601
NdeII GATC 3 cut(s) 44, 214, 622
NlaIII CATG 3 cut(s) 97, 202, 256
NmuCI GTSAC 3 cut(s) 202, 232, 595
NsbI TGCGCA 1 cut(s) 454
NspI RCATGY 1 cut(s) 256
PctI GAATGC 2 cut(s) 375, 386
PfeI GAWTC 3 cut(s) 73, 100, 672
PkrI GCNGC 8 cut(s) 457, 460, 463, 516, 574, 640, 719, 756
PleI GAGTC 1 cut(s) 502
PpsI GAGTC 1 cut(s) 502
PstI CTGCAG 2 cut(s) 492, 547
PsuI RGATCY 1 cut(s) 44
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 2 cut(s) 159, 611
RsaNI GTAC 2 cut(s) 158, 610
SaqAI TTAA 6 cut(s) 149, 176, 240, 260, 428, 557
SatI GCNGC 8 cut(s) 456, 459, 462, 515, 573, 639, 718, 755
Sau3AI GATC 3 cut(s) 44, 214, 622
ScaI AGTACT 1 cut(s) 611
SchI GAGTC 1 cut(s) 502
SduI GDGCHC 2 cut(s) 358, 485
SfaNI GCATC 3 cut(s) 296, 319, 339
SfcI CTRYAG 2 cut(s) 488, 543
Sse9I AATT 5 cut(s) 88, 150, 167, 237, 261
SsiI CCGC 2 cut(s) 512, 754
SspI AATATT 1 cut(s) 561
SspMI CTAG 1 cut(s) 615
StyI CCWWGG 1 cut(s) 314
TaaI ACNGT 1 cut(s) 426
TaqI TCGA 4 cut(s) 98, 171, 399, 670
TasI AATT 5 cut(s) 88, 150, 167, 237, 261
TatI WGTACW 2 cut(s) 157, 609
TauI GCSGC 1 cut(s) 757
TfiI GAWTC 3 cut(s) 73, 100, 672
Tru1I TTAA 6 cut(s) 149, 176, 240, 260, 428, 557
Tru9I TTAA 6 cut(s) 149, 176, 240, 260, 428, 557
TscAI CASTG 1 cut(s) 277
TseFI GTSAC 3 cut(s) 202, 232, 595
TseI GCWGC 7 cut(s) 455, 458, 461, 514, 572, 638, 717
Tsp45I GTSAC 3 cut(s) 202, 232, 595
TspDTI ATGAA 4 cut(s) 82, 435, 552, 618
TspRI CASTG 1 cut(s) 277
VneI GTGCAC 1 cut(s) 481
XapI RAATTY 2 cut(s) 88, 167
XceI RCATGY 1 cut(s) 256
XspI CTAG 1 cut(s) 615
ZrmI AGTACT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.