MD05G1244600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0016787
Physical Location & Seq
Forward (+)
37693059 .. 37695478
2420 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1244600.v1.1.491

Sequence Viewer

Length: 1038 bp
ATGAAATCAGTTCAGAAACCATTGCAAATCCTCTCCCGTGCCTCAAAATTCACAACCACACCGCTCTCATTTTCCATCTCCTCTTCAGTTTCTGAGTCAATCACTGCACCAAAACCAACCAAACAACCCCAACCTGAAAGCCTAACCCAAGAAGATCACACAAAGATCAACCTCCTCCTCCCGCGCCTCTGCCTCTTGAACCACCTCGACACGGCGACCCACCTCGCTATCACCGCCCTGCTCACAAACTCACCTCTCGAATCCATTTCTCTCTCCGTCCTCATCCACTCCTTCACTTCCCAACCCGACCTGGCCCGACCCATGTCGCTTTTGACCCGCCTCAGACACAACCCGCCTTCGCATCCCCACCTTACGCCCATCGCAACCATGCTCATTGCCTCATACTTTAAGAAAAACAGACCCAGAGAGGCATTCAAGATGTTCAGCTGGTTGGTGAGGCCAGGGTCCCAGTGTGTGCTCGATGAGAGAGTTTGTGAGGTTTTGGTTAATGGGTTTTGTAGGAAAGGGATGGTTTGTGAGGGTTTGAAGGTTCTGAGGGCAATGCTGGGTGCGAATATCGTGCCGGGAGGCGGTGTGAGGAAGTGGGTTTATAGGGGGTTGTTGAGGGAGGCTAGGATTAAGGAGGCAGTGGAGTTGAATGAGGCTTTAGGGTGTGTCAGGGTTGGGGCGAATGGTGATGAATCAGAGGGTGTGAAGAAGGTTTTGGCTTTGTTGGATCACATGATTTTCAGTTTAAGGCGTGGCATTTTTGTGAAGATTGTTGCTTCCTGCGTGCAAGACGGTAGCAGGATTCTTGAGGAGCTCCTGTATCTGCTGTTGCAGTTGCATTCCACAGCTGAAGACTTCCGGAGCTGCAAACTCGGTCCTGCATCTTGCACAGGGTCTGTCCATTCATATTCCATTTTCATCTTCTGTTCTAAAAAGCAGTCGAGCAGAAAGCATTGCCCCTTTGTCCGCTTTAGAAATGGTGCTTACTGCTTGGTACCAGCATGGTCGAAGAATGGCGTTGAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

346

Amino Acids

38.29

Weight (kDa)

9.6

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016787)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g13150 FvH4_3g13150
malus_domestica MD05G1244600.v1.1
prunus_persica Prupe.4G119000_v2.0.a1
pyrus_communis pycom05g22110
rosa_chinensis RchiOBHm_Chr5g0021391
rosa_laevigata RLG00000032609
rosa_roxburghii Rroxscaffold_1G00057150
rosa_rugosa Rorug05G0066900
rosa_samantha Rh5AG156000 Rh5BG155500 Rh5CG169200 Rh5DG156000
rosa_wichuraiana Rw5G013890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1003
AccB1I GGYRCC 1 cut(s) 1003
AccBSI CCGCTC 1 cut(s) 64
AccII CGCG 1 cut(s) 184
AccIII TCCGGA 1 cut(s) 867
AciI CCGC 7 cut(s) 62, 182, 234, 337, 353, 591, 976
AclWI GGATC 1 cut(s) 744
AcsI RAATTY 1 cut(s) 47
AcuI CTGAAG 2 cut(s) 69, 879
AfaI GTAC 1 cut(s) 1005
AfiI CCNNNNNNNGG 2 cut(s) 211, 590
AgsI TTSAA 4 cut(s) 199, 436, 547, 658
AjnI CCWGG 2 cut(s) 309, 460
AjuI GAANNNNNNNTTGG 2 cut(s) 707, 739
AluBI AGCT 4 cut(s) 447, 823, 857, 873
AluI AGCT 4 cut(s) 447, 823, 857, 873
Alw21I GWGCWC 2 cut(s) 480, 825
AlwI GGATC 1 cut(s) 744
AlwNI CAGNNNCTG 2 cut(s) 92, 905
Aor13HI TCCGGA 1 cut(s) 867
AoxI GGCC 2 cut(s) 312, 458
ApeKI GCWGC 1 cut(s) 873
ApoI RAATTY 1 cut(s) 47
Asp718I GGTACC 1 cut(s) 1003
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 3 cut(s) 313, 465, 884
AsuC2I CCSGG 1 cut(s) 585
AsuHPI GGTGA 4 cut(s) 223, 243, 466, 707
AvaII GGWCC 2 cut(s) 465, 884
BanI GGYRCC 1 cut(s) 1003
BanII GRGCYC 1 cut(s) 825
BbsI GAAGAC 1 cut(s) 867
Bbv12I GWGCWC 2 cut(s) 480, 825
BbvI GCAGC 1 cut(s) 860
BccI CCATC 3 cut(s) 83, 386, 523
BceAI ACGGC 1 cut(s) 228
BcgI CGANNNNNNTGC 2 cut(s) 562, 596
BciT130I CCWGG 2 cut(s) 311, 462
BcnI CCSGG 1 cut(s) 585
BfaI CTAG 1 cut(s) 633
BisI GCNGC 1 cut(s) 874
BlsI GCNGC 1 cut(s) 875
Bme1390I CCNGG 3 cut(s) 311, 462, 585
Bme18I GGWCC 2 cut(s) 465, 884
BmgT120I GGNCC 3 cut(s) 313, 465, 884
BmiI GGNNCC 3 cut(s) 466, 467, 1005
BmrFI CCNGG 3 cut(s) 311, 462, 585
BmrI ACTGGG 1 cut(s) 463
BmsI GCATC 2 cut(s) 370, 899
BmuI ACTGGG 1 cut(s) 463
BoxI GACNNNNGTC 1 cut(s) 322
BpiI GAAGAC 1 cut(s) 867
BpuEI CTTGAG 1 cut(s) 836
BpuMI CCSGG 1 cut(s) 585
BsaJI CCNNGG 1 cut(s) 461
BsaWI WCCGGW 1 cut(s) 867
BsaXI ACNNNNNCTCC 4 cut(s) 579, 609, 812, 842
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 590
Bse1I ACTGG 1 cut(s) 469
Bse3DI GCAATG 4 cut(s) 20, 393, 567, 961
BseAI TCCGGA 1 cut(s) 867
BseBI CCWGG 2 cut(s) 311, 462
BseDI CCNNGG 1 cut(s) 461
BseGI GGATG 3 cut(s) 282, 361, 534
BseLI CCNNNNNNNGG 2 cut(s) 211, 590
BseMI GCAATG 4 cut(s) 20, 393, 567, 961
BseMII CTCAG 3 cut(s) 84, 355, 545
BseNI ACTGG 1 cut(s) 469
BseRI GAGGAG 4 cut(s) 70, 164, 167, 833
BseXI GCAGC 1 cut(s) 860
BseYI CCCAGC 1 cut(s) 565
BsgI GTGCAG 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 184
BshFI GGCC 2 cut(s) 314, 460
BshNI GGYRCC 1 cut(s) 1003
BsiHKAI GWGCWC 2 cut(s) 480, 825
BsiSI CCGG 2 cut(s) 584, 868
BslFI GGGAC 1 cut(s) 451
BslI CCNNNNNNNGG 2 cut(s) 211, 590
BsmFI GGGAC 1 cut(s) 451
BsmI GAATGC 2 cut(s) 431, 847
BsnI GGCC 2 cut(s) 314, 460
Bsp1286I GDGCHC 2 cut(s) 480, 825
Bsp13I TCCGGA 1 cut(s) 867
Bsp143I GATC 3 cut(s) 154, 165, 736
BspACI CCGC 7 cut(s) 62, 182, 234, 337, 353, 591, 976
BspANI GGCC 2 cut(s) 314, 460
BspCNI CTCAG 3 cut(s) 85, 354, 546
BspEI TCCGGA 1 cut(s) 867
BspFNI CGCG 1 cut(s) 184
BspLI GGNNCC 3 cut(s) 466, 467, 1005
BspPI GGATC 1 cut(s) 744
BspT107I GGYRCC 1 cut(s) 1003
BsrBI CCGCTC 1 cut(s) 64
BsrDI GCAATG 4 cut(s) 20, 393, 567, 961
BsrI ACTGG 1 cut(s) 469
BssECI CCNNGG 1 cut(s) 461
BssMI GATC 3 cut(s) 154, 165, 736
Bst2UI CCWGG 2 cut(s) 311, 462
Bst4CI ACNGT 1 cut(s) 803
Bst6I CTCTTC 1 cut(s) 88
BstC8I GCNNGC 1 cut(s) 794
BstDEI CTNAG 3 cut(s) 93, 341, 554
BstF5I GGATG 3 cut(s) 282, 361, 534
BstFNI CGCG 1 cut(s) 184
BstHHI GCGC 1 cut(s) 186
BstKTI GATC 3 cut(s) 157, 168, 739
BstMBI GATC 3 cut(s) 154, 165, 736
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 2 cut(s) 311, 462
BstPAI GACNNNNGTC 1 cut(s) 322
BstSCI CCNGG 3 cut(s) 309, 460, 583
BstUI CGCG 1 cut(s) 184
BstV1I GCAGC 1 cut(s) 860
BstV2I GAAGAC 1 cut(s) 867
BsuRI GGCC 2 cut(s) 314, 460
BtgZI GCGATG 1 cut(s) 364
BtsCI GGATG 3 cut(s) 282, 361, 534
BtsI GCAGTG 2 cut(s) 102, 654
BtsIMutI CAGTG 3 cut(s) 102, 476, 654
Cac8I GCNNGC 1 cut(s) 794
CaiI CAGNNNCTG 2 cut(s) 92, 905
CfoI GCGC 1 cut(s) 186
Cfr13I GGNCC 3 cut(s) 313, 465, 884
Csp6I GTAC 1 cut(s) 1004
CviAII CATG 4 cut(s) 322, 388, 742, 1011
CviQI GTAC 1 cut(s) 1004
DdeI CTNAG 3 cut(s) 93, 341, 554
DpnI GATC 3 cut(s) 156, 167, 738
DpnII GATC 3 cut(s) 154, 165, 736
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Ecl136II GAGCTC 1 cut(s) 823
Eco24I GRGCYC 1 cut(s) 825
Eco47I GGWCC 2 cut(s) 465, 884
Eco53kI GAGCTC 1 cut(s) 823
Eco57I CTGAAG 2 cut(s) 69, 879
EcoICRI GAGCTC 1 cut(s) 823
EcoO109I RGGNCCY 1 cut(s) 465
EcoRII CCWGG 2 cut(s) 309, 460
EcoT38I GRGCYC 1 cut(s) 825
FaeI CATG 4 cut(s) 325, 391, 745, 1014
FaiI YATR 7 cut(s) 323, 389, 403, 612, 743, 916, 1012
FaqI GGGAC 1 cut(s) 451
FatI CATG 4 cut(s) 321, 387, 741, 1010
FauI CCCGC 3 cut(s) 189, 344, 360
Fnu4HI GCNGC 1 cut(s) 874
FokI GGATG 3 cut(s) 269, 348, 541
FriOI GRGCYC 1 cut(s) 825
Fsp4HI GCNGC 1 cut(s) 874
FspBI CTAG 1 cut(s) 633
GlaI GCGC 1 cut(s) 185
GluI GCNGC 1 cut(s) 874
GsaI CCCAGC 1 cut(s) 569
HaeIII GGCC 2 cut(s) 314, 460
HapII CCGG 2 cut(s) 584, 868
HhaI GCGC 1 cut(s) 186
Hin1II CATG 4 cut(s) 325, 391, 745, 1014
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HinfI GANTC 4 cut(s) 95, 260, 701, 811
HpaII CCGG 2 cut(s) 584, 868
HphI GGTGA 4 cut(s) 223, 243, 466, 707
Hpy188I TCNGA 5 cut(s) 15, 94, 344, 555, 706
Hpy188III TCNNGA 5 cut(s) 196, 257, 436, 815, 868
HpyAV CCTTC 4 cut(s) 301, 366, 541, 712
HpyCH4III ACNGT 1 cut(s) 803
HpyCH4V TGCA 8 cut(s) 25, 107, 796, 841, 847, 876, 890, 897
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 3 cut(s) 93, 341, 554
Hsp92II CATG 4 cut(s) 325, 391, 745, 1014
HspAI GCGC 1 cut(s) 184
KflI GGGWCCC 1 cut(s) 465
Kpn2I TCCGGA 1 cut(s) 867
KpnI GGTACC 1 cut(s) 1007
Kzo9I GATC 3 cut(s) 154, 165, 736
LmnI GCTCC 3 cut(s) 820, 828, 870
Lsp1109I GCAGC 1 cut(s) 860
LweI GCATC 2 cut(s) 370, 899
MaeI CTAG 1 cut(s) 633
MalI GATC 3 cut(s) 156, 167, 738
MbiI CCGCTC 1 cut(s) 64
MboI GATC 3 cut(s) 154, 165, 736
MboII GAAGA 7 cut(s) 75, 164, 727, 787, 872, 922, 1030
MhlI GDGCHC 2 cut(s) 480, 825
MluCI AATT 1 cut(s) 47
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 714
MroI TCCGGA 1 cut(s) 867
MseI TTAA 4 cut(s) 408, 507, 639, 755
MslI CAYNNNNRTG 1 cut(s) 770
MspA1I CMGCKG 2 cut(s) 447, 857
MspI CCGG 2 cut(s) 584, 868
MspR9I CCNGG 3 cut(s) 311, 462, 585
Mva1269I GAATGC 2 cut(s) 431, 847
MvaI CCWGG 2 cut(s) 311, 462
MvnI CGCG 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 233
NciI CCSGG 1 cut(s) 585
NdeII GATC 3 cut(s) 154, 165, 736
NlaIII CATG 4 cut(s) 325, 391, 745, 1014
NlaIV GGNNCC 3 cut(s) 466, 467, 1005
PctI GAATGC 2 cut(s) 431, 847
PfeI GAWTC 3 cut(s) 260, 701, 811
PkrI GCNGC 1 cut(s) 875
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PpuMI RGGWCCY 1 cut(s) 465
PshAI GACNNNNGTC 1 cut(s) 322
Psp124BI GAGCTC 1 cut(s) 825
Psp5II RGGWCCY 1 cut(s) 465
Psp6I CCWGG 2 cut(s) 309, 460
PspFI CCCAGC 1 cut(s) 565
PspGI CCWGG 2 cut(s) 309, 460
PspN4I GGNNCC 3 cut(s) 466, 467, 1005
PspPI GGNCC 3 cut(s) 313, 465, 884
PspPPI RGGWCCY 1 cut(s) 465
PstNI CAGNNNCTG 2 cut(s) 92, 905
PvuII CAGCTG 2 cut(s) 447, 857
RsaI GTAC 1 cut(s) 1005
RsaNI GTAC 1 cut(s) 1004
RseI CAYNNNNRTG 1 cut(s) 770
SacI GAGCTC 1 cut(s) 825
SaqAI TTAA 4 cut(s) 408, 507, 639, 755
SatI GCNGC 1 cut(s) 874
Sau3AI GATC 3 cut(s) 154, 165, 736
Sau96I GGNCC 3 cut(s) 313, 465, 884
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 3 cut(s) 311, 462, 585
SduI GDGCHC 2 cut(s) 480, 825
SfaNI GCATC 2 cut(s) 370, 899
SinI GGWCC 2 cut(s) 465, 884
SmiMI CAYNNNNRTG 1 cut(s) 770
SmlI CTYRAG 1 cut(s) 815
SmoI CTYRAG 1 cut(s) 815
Sse9I AATT 1 cut(s) 47
SsiI CCGC 7 cut(s) 62, 182, 234, 337, 353, 591, 976
SspMI CTAG 1 cut(s) 633
SstI GAGCTC 1 cut(s) 825
StyD4I CCNGG 3 cut(s) 309, 460, 583
TaaI ACNGT 1 cut(s) 803
TaqI TCGA 5 cut(s) 207, 258, 480, 950, 1016
TaqII GACCGA 1 cut(s) 872
TasI AATT 1 cut(s) 47
TfiI GAWTC 3 cut(s) 260, 701, 811
Tru1I TTAA 4 cut(s) 408, 507, 639, 755
Tru9I TTAA 4 cut(s) 408, 507, 639, 755
TscAI CASTG 3 cut(s) 109, 476, 654
TseI GCWGC 1 cut(s) 873
TspDTI ATGAA 4 cut(s) 17, 714, 903, 916
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 3 cut(s) 109, 476, 654
VpaK11BI GGWCC 2 cut(s) 465, 884
XapI RAATTY 1 cut(s) 47
XspI CTAG 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.