RLG00000032609

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
16951925 .. 16952695
771 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032609

Sequence Viewer

Length: 771 bp
ATGAAGTCAGTCCAGAAAGCACAGCAAATTTTCTCTCTTGCCTCAAAACCCACCATCACACAACTCTCATTTCCCTTCTCCTCTTCTTCAACCATTGATTCAATCACTTCACCAAAACCAACACAAACTCAAACTCAAACTCAAACTCTAACCCAAGAGGACCTCACAAACATCAACCTCCTCCTCCCCCGCCTCTGCCTCTCACACCACCTGGACACCGCAACCCACCTCACCATCACAGCCCTCCTCACAAACCCACCTCTCCAATCCCTCTCTCTCTCCATTCTCATCCACTCCTTCACTTCCCAACCCGACATGGCCCGGCCCATGTCACTTCTGACCCGCCTCCGCCACAACCCACCTTCCCATTCCTATCTCACTCCCATCACAACCATGCTCATTGCCTCTTATTTCAAGAGAAAGAGACCCAGAGAGGCCCTCAAGCTGTTCAATTGGATGGTGAGACCTGGCTCCCCAGTTGTGCTTGATGAGAGGGTTTGTGGGGTTTTGGTTTGTGGGTTTTGTAGGAATGGGATGGTGCTTGAGGCTTTGAATGTTTTGAGGGCAATGTTGGGTGCGGATATCGTGCCGGGTTGTGGTTTGAGGAAGTGGGTTTATAGGGGTTTGTTGAGAGAGGCTAGGATTAGGGAGGCATTGGATTTGAATGAGGCTTTGGATTGCGTTGGGAATAGTGAGAAAGGTGGTGAATCTGAGGGTTTTAGGAAGGTTTTGGCTTTATTGGATCATATGATTGATAAGTGGACAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

257

Amino Acids

28.58

Weight (kDa)

9.25

Isoelectric Point (pI)

36.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016787)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g13150 FvH4_3g13150
malus_domestica MD05G1244600.v1.1
prunus_persica Prupe.4G119000_v2.0.a1
pyrus_communis pycom05g22110
rosa_chinensis RchiOBHm_Chr5g0021391
rosa_laevigata RLG00000032609
rosa_roxburghii Rroxscaffold_1G00057150
rosa_rugosa Rorug05G0066900
rosa_samantha Rh5AG156000 Rh5BG155500 Rh5CG169200 Rh5DG156000
rosa_wichuraiana Rw5G013890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 190, 219, 343, 349, 578
AclWI GGATC 1 cut(s) 750
AcsI RAATTY 1 cut(s) 27
AfiI CCNNNNNNNGG 1 cut(s) 596
AgsI TTSAA 6 cut(s) 90, 102, 415, 451, 553, 664
AjnI CCWGG 2 cut(s) 210, 466
AjuI GAANNNNNNNTTGG 2 cut(s) 656, 688
AluBI AGCT 1 cut(s) 445
AluI AGCT 1 cut(s) 445
Alw26I GTCTC 2 cut(s) 418, 457
AlwI GGATC 1 cut(s) 750
AoxI GGCC 3 cut(s) 318, 323, 435
ApoI RAATTY 1 cut(s) 27
AspS9I GGNCC 4 cut(s) 160, 319, 324, 436
AsuC2I CCSGG 2 cut(s) 322, 591
AsuHPI GGTGA 4 cut(s) 102, 223, 472, 716
AvaII GGWCC 1 cut(s) 160
BccI CCATC 5 cut(s) 62, 242, 392, 451, 529
BciT130I CCWGG 2 cut(s) 212, 468
BcnI CCSGG 2 cut(s) 322, 591
BcoDI GTCTC 2 cut(s) 418, 457
BfaI CTAG 1 cut(s) 639
Bme1390I CCNGG 4 cut(s) 212, 322, 468, 591
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 4 cut(s) 160, 319, 324, 436
BmiI GGNNCC 1 cut(s) 472
BmrFI CCNGG 4 cut(s) 212, 322, 468, 591
BmrI ACTGGG 1 cut(s) 470
BmuI ACTGGG 1 cut(s) 470
BplI GAGNNNNNCTC 2 cut(s) 423, 455
BpuEI CTTGAG 2 cut(s) 425, 563
BpuMI CCSGG 2 cut(s) 322, 591
BsaI GGTCTC 2 cut(s) 418, 457
Bsc4I CCNNNNNNNGG 1 cut(s) 596
Bse1I ACTGG 1 cut(s) 476
Bse3DI GCAATG 2 cut(s) 399, 573
BseBI CCWGG 2 cut(s) 212, 468
BseGI GGATG 3 cut(s) 288, 462, 540
BseLI CCNNNNNNNGG 1 cut(s) 596
BseMI GCAATG 2 cut(s) 399, 573
BseMII CTCAG 1 cut(s) 702
BseNI ACTGG 1 cut(s) 476
BseRI GAGGAG 4 cut(s) 70, 170, 173, 236
BshFI GGCC 3 cut(s) 320, 325, 437
BsiSI CCGG 2 cut(s) 322, 590
BslI CCNNNNNNNGG 1 cut(s) 596
BsmAI GTCTC 2 cut(s) 418, 457
BsnI GGCC 3 cut(s) 320, 325, 437
Bso31I GGTCTC 2 cut(s) 418, 457
Bsp143I GATC 1 cut(s) 742
BspACI CCGC 5 cut(s) 190, 219, 343, 349, 578
BspANI GGCC 3 cut(s) 320, 325, 437
BspCNI CTCAG 1 cut(s) 703
BspLI GGNNCC 1 cut(s) 472
BspPI GGATC 1 cut(s) 750
BspTNI GGTCTC 2 cut(s) 418, 457
BsrDI GCAATG 2 cut(s) 399, 573
BsrI ACTGG 1 cut(s) 476
BssMI GATC 1 cut(s) 742
Bst2UI CCWGG 2 cut(s) 212, 468
Bst6I CTCTTC 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 711
BstF5I GGATG 3 cut(s) 288, 462, 540
BstKTI GATC 1 cut(s) 745
BstMAI GTCTC 2 cut(s) 418, 457
BstMBI GATC 1 cut(s) 742
BstNI CCWGG 2 cut(s) 212, 468
BstSCI CCNGG 4 cut(s) 210, 320, 466, 589
BsuRI GGCC 3 cut(s) 320, 325, 437
BtsCI GGATG 3 cut(s) 288, 462, 540
Cfr13I GGNCC 4 cut(s) 160, 319, 324, 436
CviAII CATG 3 cut(s) 316, 328, 394
DdeI CTNAG 1 cut(s) 711
DpnI GATC 1 cut(s) 744
DpnII GATC 1 cut(s) 742
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
EciI GGCGGA 1 cut(s) 338
Eco31I GGTCTC 2 cut(s) 418, 457
Eco32I GATATC 1 cut(s) 583
Eco47I GGWCC 1 cut(s) 160
EcoO109I RGGNCCY 2 cut(s) 160, 436
EcoRII CCWGG 2 cut(s) 210, 466
EcoRV GATATC 1 cut(s) 583
FaeI CATG 3 cut(s) 319, 331, 397
FaiI YATR 6 cut(s) 317, 329, 395, 618, 747, 749
FatI CATG 3 cut(s) 315, 327, 393
FauI CCCGC 2 cut(s) 197, 350
FauNDI CATATG 1 cut(s) 747
FokI GGATG 3 cut(s) 275, 469, 547
FspBI CTAG 1 cut(s) 639
HaeIII GGCC 3 cut(s) 320, 325, 437
HapII CCGG 2 cut(s) 322, 590
Hin1II CATG 3 cut(s) 319, 331, 397
HinfI GANTC 2 cut(s) 98, 707
HpaII CCGG 2 cut(s) 322, 590
HphI GGTGA 4 cut(s) 102, 223, 472, 716
Hpy166II GTNNAC 1 cut(s) 762
Hpy188I TCNGA 2 cut(s) 339, 712
Hpy188III TCNNGA 2 cut(s) 13, 415
Hpy8I GTNNAC 1 cut(s) 762
HpyAV CCTTC 4 cut(s) 85, 307, 372, 718
HpyF3I CTNAG 1 cut(s) 711
Hsp92II CATG 3 cut(s) 319, 331, 397
Kzo9I GATC 1 cut(s) 742
LmnI GCTCC 1 cut(s) 476
LpnPI CCDG 9 cut(s) 26, 197, 224, 335, 442, 453, 480, 489, 603
MaeI CTAG 1 cut(s) 639
MaeIII GTNAC 1 cut(s) 330
MalI GATC 1 cut(s) 744
MboI GATC 1 cut(s) 742
MboII GAAGA 2 cut(s) 75, 78
MfeI CAATTG 1 cut(s) 451
MluCI AATT 2 cut(s) 27, 451
MslI CAYNNNNRTG 1 cut(s) 392
MspI CCGG 2 cut(s) 322, 590
MspR9I CCNGG 4 cut(s) 212, 322, 468, 591
MunI CAATTG 1 cut(s) 451
MvaI CCWGG 2 cut(s) 212, 468
NciI CCSGG 2 cut(s) 322, 591
NdeI CATATG 1 cut(s) 747
NdeII GATC 1 cut(s) 742
NlaIII CATG 3 cut(s) 319, 331, 397
NlaIV GGNNCC 1 cut(s) 472
NmuCI GTSAC 1 cut(s) 330
PfeI GAWTC 2 cut(s) 98, 707
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
Psp6I CCWGG 2 cut(s) 210, 466
PspGI CCWGG 2 cut(s) 210, 466
PspN4I GGNNCC 1 cut(s) 472
PspPI GGNCC 4 cut(s) 160, 319, 324, 436
PspPPI RGGWCCY 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 392
Sau3AI GATC 1 cut(s) 742
Sau96I GGNCC 4 cut(s) 160, 319, 324, 436
ScrFI CCNGG 4 cut(s) 212, 322, 468, 591
SinI GGWCC 1 cut(s) 160
SmiMI CAYNNNNRTG 1 cut(s) 392
SmlI CTYRAG 2 cut(s) 440, 542
SmoI CTYRAG 2 cut(s) 440, 542
Sse9I AATT 2 cut(s) 27, 451
SsiI CCGC 5 cut(s) 190, 219, 343, 349, 578
SspMI CTAG 1 cut(s) 639
StyD4I CCNGG 4 cut(s) 210, 320, 466, 589
TasI AATT 2 cut(s) 27, 451
TfiI GAWTC 2 cut(s) 98, 707
TseFI GTSAC 1 cut(s) 330
Tsp45I GTSAC 1 cut(s) 330
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 160
XapI RAATTY 1 cut(s) 27
XspI CTAG 1 cut(s) 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.