Rh5AG156000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0016787
Physical Location & Seq
Reverse (-)
16413580 .. 16415826
2247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG156000.1

Sequence Viewer

Length: 765 bp
ATGAAGTCAGTCCAGAAAGCACAGCAAATTTTCTCTCTCGTCTCAAAACCCACCATCACACAACTCTCAATTCCCTTCTCCTCTTCTTCAACCATTGATTCAATCACTTCACCAAAACCAAAACCAACACAAACTCAAACTCTAACCCAAGAAGACCTCATAAACATCAACCTCCTCCTCCCACGCCTCTGCCTCTCACACCACCTGGACGCCGCAACCCACCTCACCATCACAGCCCTCCTCACAAACCCACCTCTCCAATCCCTCTCTCTCTCCATTCTCATCCACTCCTTCACTTCCCAACCCGACATGGCCCGGCCCATGTCACTTCTGACCCGTCTCCGGCACAACCCACCTTCCCATTCCTATCTCACTCCCATCACAACCATGCTCATTGCCTCTTATTTCAAGAGAAAGAGACCCAGAGAGGCCCTCAAGCTTTTCAACTGGATGGTGAGGCCTGGCTCCCCAGTTGTGCTTGATGAGAGAGTTTGTGGGGTTTTGGTTGGTGGGTTTTGTAGGAATGGGATGGCGCTTGAGGCTTTGAATGTTTTGAGGGCAATGTTGGGTGCGAGTATCGTTCCGGGATGTAATTTGAGGAAGTGGGTTTATAGGGGTTTGTTGAGGGAGGCTAGGATTAGGGAGGCGTTGGAGTTGAATGAGGCTCTGGATTGTGTTGGGGATAGTGAGAAAGGTTGTGTATCTGAGGGTTTTAGAAAGGTTTTTGCTTTGTTGGATCATATGATCGATAGCTGGACAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

254

Amino Acids

28.3

Weight (kDa)

9.38

Isoelectric Point (pI)

38.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016787)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g13150 FvH4_3g13150
malus_domestica MD05G1244600.v1.1
prunus_persica Prupe.4G119000_v2.0.a1
pyrus_communis pycom05g22110
rosa_chinensis RchiOBHm_Chr5g0021391
rosa_laevigata RLG00000032609
rosa_roxburghii Rroxscaffold_1G00057150
rosa_rugosa Rorug05G0066900
rosa_samantha Rh5AG156000 Rh5BG155500 Rh5CG169200 Rh5DG156000
rosa_wichuraiana Rw5G013890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 213
AclWI GGATC 1 cut(s) 744
AcsI RAATTY 1 cut(s) 27
AcyI GRCGYC 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 342
AgsI TTSAA 6 cut(s) 90, 102, 409, 445, 547, 658
AjnI CCWGG 2 cut(s) 204, 460
AluBI AGCT 2 cut(s) 439, 753
AluI AGCT 2 cut(s) 439, 753
Alw26I GTCTC 3 cut(s) 46, 344, 412
AlwI GGATC 1 cut(s) 744
AoxI GGCC 4 cut(s) 312, 317, 429, 458
ApoI RAATTY 1 cut(s) 27
AspLEI GCGC 1 cut(s) 535
AspS9I GGNCC 3 cut(s) 313, 318, 430
AsuC2I CCSGG 2 cut(s) 316, 585
AsuHPI GGTGA 3 cut(s) 102, 217, 466
BbsI GAAGAC 1 cut(s) 159
BccI CCATC 5 cut(s) 62, 236, 386, 445, 523
BciT130I CCWGG 2 cut(s) 206, 462
BcnI CCSGG 2 cut(s) 316, 585
BcoDI GTCTC 3 cut(s) 46, 344, 412
BfaI CTAG 1 cut(s) 633
BfoI RGCGCY 1 cut(s) 536
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme1390I CCNGG 4 cut(s) 206, 316, 462, 585
BmgT120I GGNCC 3 cut(s) 313, 318, 430
BmiI GGNNCC 1 cut(s) 466
BmrFI CCNGG 4 cut(s) 206, 316, 462, 585
BmrI ACTGGG 1 cut(s) 464
BmuI ACTGGG 1 cut(s) 464
BpiI GAAGAC 1 cut(s) 159
BplI GAGNNNNNCTC 2 cut(s) 417, 449
BpuEI CTTGAG 2 cut(s) 419, 557
BpuMI CCSGG 2 cut(s) 316, 585
Bsa29I ATCGAT 1 cut(s) 747
BsaHI GRCGYC 1 cut(s) 210
BsaI GGTCTC 1 cut(s) 412
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse1I ACTGG 2 cut(s) 452, 470
Bse3DI GCAATG 2 cut(s) 393, 567
BseBI CCWGG 2 cut(s) 206, 462
BseCI ATCGAT 1 cut(s) 747
BseGI GGATG 4 cut(s) 282, 456, 534, 593
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMI GCAATG 2 cut(s) 393, 567
BseMII CTCAG 1 cut(s) 696
BseNI ACTGG 2 cut(s) 452, 470
BseRI GAGGAG 4 cut(s) 70, 164, 167, 230
BshFI GGCC 4 cut(s) 314, 319, 431, 460
BshVI ATCGAT 1 cut(s) 747
BsiSI CCGG 3 cut(s) 316, 343, 584
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 3 cut(s) 46, 344, 412
BsmBI CGTCTC 2 cut(s) 46, 344
BsnI GGCC 4 cut(s) 314, 319, 431, 460
Bso31I GGTCTC 1 cut(s) 412
Bsp143I GATC 2 cut(s) 736, 744
BspACI CCGC 1 cut(s) 213
BspANI GGCC 4 cut(s) 314, 319, 431, 460
BspCNI CTCAG 1 cut(s) 697
BspDI ATCGAT 1 cut(s) 747
BspLI GGNNCC 1 cut(s) 466
BspPI GGATC 1 cut(s) 744
BspTNI GGTCTC 1 cut(s) 412
BsrDI GCAATG 2 cut(s) 393, 567
BsrI ACTGG 2 cut(s) 452, 470
BssMI GATC 2 cut(s) 736, 744
BssNI GRCGYC 1 cut(s) 210
Bst2UI CCWGG 2 cut(s) 206, 462
Bst6I CTCTTC 1 cut(s) 88
BstACI GRCGYC 1 cut(s) 210
BstDEI CTNAG 1 cut(s) 705
BstF5I GGATG 4 cut(s) 282, 456, 534, 593
BstH2I RGCGCY 1 cut(s) 536
BstHHI GCGC 1 cut(s) 535
BstKTI GATC 2 cut(s) 739, 747
BstMAI GTCTC 3 cut(s) 46, 344, 412
BstMBI GATC 2 cut(s) 736, 744
BstMWI GCNNNNNNNGC 1 cut(s) 539
BstNI CCWGG 2 cut(s) 206, 462
BstSCI CCNGG 4 cut(s) 204, 314, 460, 583
BstV2I GAAGAC 1 cut(s) 159
Bsu15I ATCGAT 1 cut(s) 747
BsuRI GGCC 4 cut(s) 314, 319, 431, 460
BsuTUI ATCGAT 1 cut(s) 747
BtsCI GGATG 4 cut(s) 282, 456, 534, 593
CfoI GCGC 1 cut(s) 535
Cfr13I GGNCC 3 cut(s) 313, 318, 430
ClaI ATCGAT 1 cut(s) 747
CseI GACGC 1 cut(s) 218
CviAII CATG 3 cut(s) 310, 322, 388
DdeI CTNAG 1 cut(s) 705
DpnI GATC 2 cut(s) 738, 746
DpnII GATC 2 cut(s) 736, 744
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Eco147I AGGCCT 1 cut(s) 460
Eco31I GGTCTC 1 cut(s) 412
EcoO109I RGGNCCY 1 cut(s) 430
EcoRII CCWGG 2 cut(s) 204, 460
Esp3I CGTCTC 2 cut(s) 46, 344
FaeI CATG 3 cut(s) 313, 325, 391
FaiI YATR 7 cut(s) 161, 311, 323, 389, 612, 741, 743
FatI CATG 3 cut(s) 309, 321, 387
FauNDI CATATG 1 cut(s) 741
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 4 cut(s) 269, 463, 541, 600
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 1 cut(s) 633
GlaI GCGC 1 cut(s) 534
GluI GCNGC 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 536
HaeIII GGCC 4 cut(s) 314, 319, 431, 460
HapII CCGG 3 cut(s) 316, 343, 584
HgaI GACGC 1 cut(s) 218
HhaI GCGC 1 cut(s) 535
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 3 cut(s) 313, 325, 391
Hin6I GCGC 1 cut(s) 533
HinP1I GCGC 1 cut(s) 533
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 1 cut(s) 98
HpaII CCGG 3 cut(s) 316, 343, 584
HphI GGTGA 3 cut(s) 102, 217, 466
Hpy188I TCNGA 2 cut(s) 333, 706
Hpy188III TCNNGA 3 cut(s) 13, 409, 668
HpyAV CCTTC 3 cut(s) 85, 301, 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 539
HpyF3I CTNAG 1 cut(s) 705
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 3 cut(s) 313, 325, 391
HspAI GCGC 1 cut(s) 533
Kzo9I GATC 2 cut(s) 736, 744
LmnI GCTCC 1 cut(s) 470
MaeI CTAG 1 cut(s) 633
MaeIII GTNAC 1 cut(s) 324
MalI GATC 2 cut(s) 738, 746
MboI GATC 2 cut(s) 736, 744
MboII GAAGA 3 cut(s) 75, 78, 164
MluCI AATT 3 cut(s) 27, 69, 592
MmeI TCCRAC 2 cut(s) 630, 714
MslI CAYNNNNRTG 1 cut(s) 386
MspI CCGG 3 cut(s) 316, 343, 584
MspR9I CCNGG 4 cut(s) 206, 316, 462, 585
MvaI CCWGG 2 cut(s) 206, 462
MwoI GCNNNNNNNGC 1 cut(s) 539
NciI CCSGG 2 cut(s) 316, 585
NdeI CATATG 1 cut(s) 741
NdeII GATC 2 cut(s) 736, 744
NlaIII CATG 3 cut(s) 313, 325, 391
NlaIV GGNNCC 1 cut(s) 466
NmuCI GTSAC 1 cut(s) 324
PceI AGGCCT 1 cut(s) 460
PfeI GAWTC 1 cut(s) 98
PfoI TCCNGGA 1 cut(s) 583
PkrI GCNGC 1 cut(s) 214
Psp6I CCWGG 2 cut(s) 204, 460
PspGI CCWGG 2 cut(s) 204, 460
PspN4I GGNNCC 1 cut(s) 466
PspPI GGNCC 3 cut(s) 313, 318, 430
RseI CAYNNNNRTG 1 cut(s) 386
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 2 cut(s) 736, 744
Sau96I GGNCC 3 cut(s) 313, 318, 430
ScrFI CCNGG 4 cut(s) 206, 316, 462, 585
SmiMI CAYNNNNRTG 1 cut(s) 386
SmlI CTYRAG 2 cut(s) 434, 536
SmoI CTYRAG 2 cut(s) 434, 536
Sse9I AATT 3 cut(s) 27, 69, 592
SseBI AGGCCT 1 cut(s) 460
SsiI CCGC 1 cut(s) 213
SspMI CTAG 1 cut(s) 633
StuI AGGCCT 1 cut(s) 460
StyD4I CCNGG 4 cut(s) 204, 314, 460, 583
TaqI TCGA 1 cut(s) 747
TasI AATT 3 cut(s) 27, 69, 592
TauI GCSGC 1 cut(s) 215
TfiI GAWTC 1 cut(s) 98
TseFI GTSAC 1 cut(s) 324
Tsp45I GTSAC 1 cut(s) 324
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 27
XspI CTAG 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.