MD05G1250700.v1.1

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0019782
Physical Location & Seq
Forward (+)
38289613 .. 38289927
315 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1250700.v1.1.491

Sequence Viewer

Length: 315 bp
ATGGATCTGGAACAGAAAAGAACGGTTTTGGATGACTTGGACATGTTTGTTGAGAGCAAAGAGTACTACCAAAGGGTGGGATGGGCTTGGAAGCGAGGGTACCTTCTATATGGTCCTCCAAGCACTGAAAAATCACCCCTAGTAGCTGCGATGGCTAATTACCTCAAGTTCGATGTCTACGATTTGCATCTCTCACATTTGAAAACTGATTTGGAATTGAGAAAGGTGTTGCTAGCAACAACAAATAAGTCGATCCTTGGCACTGAGGACATAAAATTTTGCTTTCCACACTCCACGCATGCGGCATTTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

105

Amino Acids

12.07

Weight (kDa)

6.4

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019782)

Species Orthologous Gene IDs
malus_domestica MD05G1250700.v1.1
rosa_chinensis RchiOBHm_Chr2g0099881
rosa_laevigata RLG00000016919
rosa_rugosa Rorug02G0083700
rosa_samantha Rh2BG136100 Rh2CG137800 Rh2DG138200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 99
AccB1I GGYRCC 1 cut(s) 99
AccB7I CCANNNNNTGG 1 cut(s) 76
AccI GTMKAC 1 cut(s) 177
AciI CCGC 1 cut(s) 302
AclWI GGATC 2 cut(s) 12, 247
AcsI RAATTY 1 cut(s) 275
AfaI GTAC 2 cut(s) 65, 101
AfiI CCNNNNNNNGG 1 cut(s) 76
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 1 cut(s) 202
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
AlwI GGATC 2 cut(s) 12, 247
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 275
Asp718I GGTACC 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 126
AsuNHI GCTAGC 1 cut(s) 232
AvaII GGWCC 1 cut(s) 113
BanI GGYRCC 1 cut(s) 99
BarI GAAGNNNNNNTAC 2 cut(s) 83, 115
BbvI GCAGC 1 cut(s) 133
BccI CCATC 2 cut(s) 75, 145
BfaI CTAG 3 cut(s) 140, 233, 313
BisI GCNGC 2 cut(s) 147, 303
BlsI GCNGC 2 cut(s) 148, 304
BmcAI AGTACT 1 cut(s) 65
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 101
BmsI GCATC 1 cut(s) 196
BmtI GCTAGC 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 149
BsaBI GATNNNNATC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse8I GATNNNNATC 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 256
BseGI GGATG 2 cut(s) 37, 86
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 255
BseXI GCAGC 1 cut(s) 133
BshNI GGYRCC 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 76
Bsp143I GATC 2 cut(s) 4, 252
BspACI CCGC 1 cut(s) 302
BspCNI CTCAG 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 101
BspOI GCTAGC 1 cut(s) 236
BspPI GGATC 2 cut(s) 12, 247
BspT107I GGYRCC 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 2 cut(s) 4, 252
BssT1I CCWWGG 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 25
BstC8I GCNNGC 2 cut(s) 234, 300
BstDEI CTNAG 1 cut(s) 264
BstF5I GGATG 2 cut(s) 37, 86
BstKTI GATC 2 cut(s) 7, 255
BstMBI GATC 2 cut(s) 4, 252
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNSI RCATGY 2 cut(s) 46, 302
BstV1I GCAGC 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtgZI GCGATG 1 cut(s) 164
BtsCI GGATG 2 cut(s) 37, 86
BtsIMutI CAGTG 2 cut(s) 123, 261
Cac8I GCNNGC 2 cut(s) 234, 300
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 2 cut(s) 64, 100
CviAII CATG 2 cut(s) 43, 299
CviJI RGCY 3 cut(s) 86, 146, 155
CviKI_1 RGCY 3 cut(s) 86, 146, 155
CviQI GTAC 2 cut(s) 64, 100
DdeI CTNAG 1 cut(s) 264
DpnI GATC 2 cut(s) 6, 254
DpnII GATC 2 cut(s) 4, 252
Eco130I CCWWGG 1 cut(s) 256
Eco47I GGWCC 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 256
FaeI CATG 2 cut(s) 46, 302
FaiI YATR 5 cut(s) 44, 109, 111, 272, 300
FatI CATG 2 cut(s) 42, 298
FblI GTMKAC 1 cut(s) 177
Fnu4HI GCNGC 2 cut(s) 147, 303
FokI GGATG 2 cut(s) 44, 93
Fsp4HI GCNGC 2 cut(s) 147, 303
FspBI CTAG 3 cut(s) 140, 233, 313
GluI GCNGC 2 cut(s) 147, 303
Hin1II CATG 2 cut(s) 46, 302
HphI GGTGA 1 cut(s) 126
Hpy166II GTNNAC 1 cut(s) 178
Hpy188III TCNNGA 1 cut(s) 8
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4V TGCA 1 cut(s) 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 264
Hsp92II CATG 2 cut(s) 46, 302
KpnI GGTACC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 4, 252
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 1 cut(s) 196
MaeI CTAG 3 cut(s) 140, 233, 313
MalI GATC 2 cut(s) 6, 254
MboI GATC 2 cut(s) 4, 252
MflI RGATCY 1 cut(s) 4
MluCI AATT 3 cut(s) 157, 215, 275
MnlI CCTC 4 cut(s) 89, 126, 173, 259
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 2 cut(s) 4, 252
NheI GCTAGC 1 cut(s) 232
NlaIII CATG 2 cut(s) 46, 302
NlaIV GGNNCC 1 cut(s) 101
NspI RCATGY 2 cut(s) 46, 302
PaeI GCATGC 1 cut(s) 302
PciI ACATGT 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 177
PflMI CCANNNNNTGG 1 cut(s) 76
PkrI GCNGC 2 cut(s) 148, 304
PscI ACATGT 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 101
PspPI GGNCC 1 cut(s) 113
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 2 cut(s) 65, 101
RsaNI GTAC 2 cut(s) 64, 100
SatI GCNGC 2 cut(s) 147, 303
Sau3AI GATC 2 cut(s) 4, 252
Sau96I GGNCC 1 cut(s) 113
ScaI AGTACT 1 cut(s) 65
SetI ASST 4 cut(s) 105, 148, 165, 228
SfaNI GCATC 1 cut(s) 196
SinI GGWCC 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
SphI GCATGC 1 cut(s) 302
Sse9I AATT 3 cut(s) 157, 215, 275
SsiI CCGC 1 cut(s) 302
SspMI CTAG 3 cut(s) 140, 233, 313
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 1 cut(s) 25
TaqI TCGA 2 cut(s) 171, 251
TasI AATT 3 cut(s) 157, 215, 275
TatI WGTACW 1 cut(s) 63
TauI GCSGC 1 cut(s) 305
TscAI CASTG 2 cut(s) 130, 268
TseI GCWGC 1 cut(s) 146
TspRI CASTG 2 cut(s) 130, 268
Van91I CCANNNNNTGG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 1 cut(s) 275
XceI RCATGY 2 cut(s) 46, 302
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 3 cut(s) 140, 233, 313
ZrmI AGTACT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.