Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0019782

Physical Location & Seq

Genomic Coordinates Reverse (-)

11596995 .. 11597471

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG136100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAATATTCCGGCCTGTCACACAACCAAGTCTTTGAAGCTGCGGAGATCTACCTTCCAACCAAGATTGGTCCCTCCAACGACTGTCTCCAAGCCAGCAAAACACCTCGACAGAAGAAAATCCAACTTGCCATGGAAAAGGATCAAGAAGTTGAAGACACCTTCGAAAACATCAAACTCAACTGGCGTTACTCGTGCGTTGAACTGTTTAACAACAACAACAGCTACCCTACAATGTAACTCATCAGGTATTCACAAGCGTCACTTTGAGCTAACATTCCACAAGAACCACAAAGCAAAAGTGACCGAGTCTTACTTGCCATATGTGCTCGAGCAGGCTAAAGCAATCAAAGAAAAGGAAAACATTGTGAAGCTTTATACCCGTCACGGTAATGTTAACTATGCTTACGGTACCCGTCACGGTAATGTTACCTATGCTTATGGTGGTAGTGGTGATGGCATGGAGTTGGGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

158

Amino Acids

17.78

Weight (kDa)

10.25

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019782)

Species	Orthologous Gene IDs
malus_domestica	MD05G1250700.v1.1
rosa_chinensis	RchiOBHm_Chr2g0099881
rosa_laevigata	RLG00000016919
rosa_rugosa	Rorug02G0083700
rosa_samantha	Rh2BG136100 Rh2CG137800 Rh2DG138200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	410
AccB1I	GGYRCC	1 cut(s)	410
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	1 cut(s)	149
AfaI	GTAC	1 cut(s)	412
AgsI	TTSAA	3 cut(s)	37, 154, 202
AluBI	AGCT	4 cut(s)	40, 224, 271, 373
AluI	AGCT	4 cut(s)	40, 224, 271, 373
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	1 cut(s)	149
Ama87I	CYCGRG	1 cut(s)	329
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	40
Asp718I	GGTACC	1 cut(s)	410
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	464
AsuII	TTCGAA	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	70
BanI	GGYRCC	1 cut(s)	410
BauI	CACGAG	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	449
BcoDI	GTCTC	1 cut(s)	91
BglII	AGATCT	1 cut(s)	47
BisI	GCNGC	1 cut(s)	41
BlsI	GCNGC	1 cut(s)	42
Bme18I	GGWCC	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	2 cut(s)	72, 412
BpiI	GAAGAC	1 cut(s)	161
Bpu14I	TTCGAA	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	27
BshFI	GGCC	1 cut(s)	14
BshNI	GGYRCC	1 cut(s)	410
BsiHKAI	GWGCWC	1 cut(s)	330
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	14
BsoBI	CYCGRG	1 cut(s)	329
Bsp119I	TTCGAA	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	2 cut(s)	47, 141
Bsp19I	CCATGG	1 cut(s)	131
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	1 cut(s)	14
BspLI	GGNNCC	2 cut(s)	72, 412
BspPI	GGATC	1 cut(s)	149
BspT104I	TTCGAA	1 cut(s)	164
BspT107I	GGYRCC	1 cut(s)	410
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	131
BssMI	GATC	2 cut(s)	47, 141
BssSI	CACGAG	1 cut(s)	192
BssT1I	CCWWGG	1 cut(s)	131
Bst2BI	CACGAG	1 cut(s)	192
Bst4CI	ACNGT	5 cut(s)	85, 206, 389, 410, 422
BstBI	TTCGAA	1 cut(s)	164
BstC8I	GCNNGC	2 cut(s)	96, 336
BstDSI	CCRYGG	1 cut(s)	131
BstKTI	GATC	2 cut(s)	50, 144
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	2 cut(s)	47, 141
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstV1I	GCAGC	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	14
BtgI	CCRYGG	1 cut(s)	131
Cac8I	GCNNGC	2 cut(s)	96, 336
Cfr13I	GGNCC	1 cut(s)	70
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	411
CviAII	CATG	2 cut(s)	132, 460
CviJI	RGCY	7 cut(s)	14, 40, 94, 224, 271, 338, 373
CviKI_1	RGCY	7 cut(s)	14, 40, 94, 224, 271, 338, 373
CviQI	GTAC	1 cut(s)	411
DpnI	GATC	2 cut(s)	49, 143
DpnII	GATC	2 cut(s)	47, 141
Eco130I	CCWWGG	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	70
Eco88I	CYCGRG	1 cut(s)	329
EcoT14I	CCWWGG	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	2 cut(s)	135, 463
FaiI	YATR	8 cut(s)	133, 322, 324, 378, 402, 435, 441, 461
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	2 cut(s)	131, 459
FauNDI	CATATG	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	41
GluI	GCNGC	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	1 cut(s)	11
HgaI	GACGC	1 cut(s)	248
Hin1II	CATG	2 cut(s)	135, 463
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	1 cut(s)	308
HpaI	GTTAAC	1 cut(s)	397
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	1 cut(s)	397
HpyAV	CCTTC	2 cut(s)	64, 171
HpyCH4III	ACNGT	5 cut(s)	85, 206, 389, 410, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
Hsp92II	CATG	2 cut(s)	135, 463
KpnI	GGTACC	1 cut(s)	414
KspAI	GTTAAC	1 cut(s)	397
Kzo9I	GATC	2 cut(s)	47, 141
LpnPI	CCDG	6 cut(s)	24, 28, 108, 168, 231, 320
Lsp1109I	GCAGC	1 cut(s)	27
MaeIII	GTNAC	8 cut(s)	17, 187, 236, 260, 301, 383, 416, 427
MalI	GATC	2 cut(s)	49, 143
MboI	GATC	2 cut(s)	47, 141
MboII	GAAGA	2 cut(s)	126, 166
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	330
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	3 cut(s)	82, 101, 147
MnlI	CCTC	2 cut(s)	84, 116
MseI	TTAA	2 cut(s)	209, 396
MslI	CAYNNNNRTG	2 cut(s)	390, 423
MspI	CCGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	325
NcoI	CCATGG	1 cut(s)	131
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	2 cut(s)	47, 141
NlaIII	CATG	2 cut(s)	135, 463
NlaIV	GGNNCC	2 cut(s)	72, 412
NmuCI	GTSAC	5 cut(s)	17, 260, 301, 383, 416
NspV	TTCGAA	1 cut(s)	164
PaeR7I	CTCGAG	1 cut(s)	329
PflFI	GACNNNGTC	1 cut(s)	307
PkrI	GCNGC	1 cut(s)	42
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	72, 412
PspPI	GGNCC	1 cut(s)	70
PspXI	VCTCGAGB	1 cut(s)	329
PsuI	RGATCY	1 cut(s)	47
PsyI	GACNNNGTC	1 cut(s)	307
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
RseI	CAYNNNNRTG	2 cut(s)	390, 423
SaqAI	TTAA	2 cut(s)	209, 396
SatI	GCNGC	1 cut(s)	41
Sau3AI	GATC	2 cut(s)	47, 141
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	9 cut(s)	42, 56, 108, 163, 226, 250, 273, 375, 434
Sfr274I	CTCGAG	1 cut(s)	329
SfuI	TTCGAA	1 cut(s)	164
SinI	GGWCC	1 cut(s)	70
SlaI	CTCGAG	1 cut(s)	329
SmiMI	CAYNNNNRTG	2 cut(s)	390, 423
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
SsiI	CCGC	1 cut(s)	43
SspI	AATATT	1 cut(s)	7
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	5 cut(s)	85, 206, 389, 410, 422
TaqI	TCGA	3 cut(s)	108, 164, 330
TaqII	GACCGA	1 cut(s)	320
Tru1I	TTAA	2 cut(s)	209, 396
Tru9I	TTAA	2 cut(s)	209, 396
TseFI	GTSAC	5 cut(s)	17, 260, 301, 383, 416
TseI	GCWGC	1 cut(s)	40
Tsp45I	GTSAC	5 cut(s)	17, 260, 301, 383, 416
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	70
XhoI	CTCGAG	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.