RchiOBHm_Chr2g0099881

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0019782
Physical Location & Seq
Reverse (-)
11923942 .. 11924712
771 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47458

Sequence Viewer

Length: 771 bp
ATGAATATTCCGGCCTGTCACACAACCAAGTCTTTGAAGCTGCGGAGATCTACCTTCCAACCAAGATTGGTCCCTCCAACGACTGTCTCCAAGCCAGCAAAACACCTCGACAGAAGAAAATCCAACTTGCCATGGAAAAGGATCAAGAAGTTGAAGACACCTTCGAAAACATCATACTCAACTGGCGTTACTCGTGCGTTGAACTGTTTAACAACAACAACAGCTACCCTACAATGTAACTCATCAGGTATTCACAAGCGTCACTTTGAGCTAGCATTCCACAAGAACCACAAAGCAAAAGTGACCGAGTCTTACTTGCCATATGTGCTCGAGCAGGCTAAAGCTATCAAAGAAAAGGAAAACATTGTGAAGCTTTATACCCGTCACGGTAATGTTAACTATGCTTATGGTAGCCGTCACGGTAATGTTAACTATGCTTATGGTGGTAGTGGTGATGGCATAGAGTTAGGCATTTGGCGTTCGATAAGTCTGGAGCACCCAGCTACGTTTGAGACAATGGCGATGGAGCCCGAGCTTAAGAGAACAGTTATAGAGGATCTCGATAGGTTTGTGAGGAGGAAGAATTTTTATAGGAAGGTTGGGAAGGCTTGGAAAAGAGGTTACTTGTTGTATGGTCCACCTGGTACTGGCAAATCCAGCTTGGTTGCGGCCATGGCGAATTATCTCAAGTTTGATGTTTATGATTTGGAGCTTGCTTCTGTCAGTGGCAACGCTCAATTGAGGAATGTGTTGCTATCTACTACAAATTAA

Protein Analysis

256

Amino Acids

28.96

Weight (kDa)

10.09

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 208 - 242 1.3e-06 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019782)

Species Orthologous Gene IDs
malus_domestica MD05G1250700.v1.1
rosa_chinensis RchiOBHm_Chr2g0099881
rosa_laevigata RLG00000016919
rosa_rugosa Rorug02G0083700
rosa_samantha Rh2BG136100 Rh2CG137800 Rh2DG138200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 43, 668
AclWI GGATC 2 cut(s) 149, 564
AcoI YGGCCR 1 cut(s) 669
AcsI RAATTY 1 cut(s) 583
AfaI GTAC 1 cut(s) 646
AfiI CCNNNNNNNGG 1 cut(s) 647
AflII CTTAAG 1 cut(s) 536
AgsI TTSAA 3 cut(s) 37, 154, 202
AjnI CCWGG 1 cut(s) 640
AluBI AGCT 9 cut(s) 40, 224, 271, 344, 373, 503, 535, 660, 712
AluI AGCT 9 cut(s) 40, 224, 271, 344, 373, 503, 535, 660, 712
Alw21I GWGCWC 2 cut(s) 330, 498
Alw26I GTCTC 2 cut(s) 91, 506
AlwI GGATC 2 cut(s) 149, 564
Ama87I CYCGRG 2 cut(s) 329, 530
AoxI GGCC 2 cut(s) 12, 669
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 583
AspS9I GGNCC 2 cut(s) 70, 635
AsuHPI GGTGA 1 cut(s) 464
AsuII TTCGAA 1 cut(s) 164
AsuNHI GCTAGC 1 cut(s) 271
AvaI CYCGRG 2 cut(s) 329, 530
AvaII GGWCC 2 cut(s) 70, 635
BanII GRGCYC 1 cut(s) 531
BauI CACGAG 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 161
Bbv12I GWGCWC 2 cut(s) 330, 498
BbvI GCAGC 1 cut(s) 27
BccI CCATC 2 cut(s) 449, 517
BceAI ACGGC 1 cut(s) 399
BciT130I CCWGG 1 cut(s) 642
BcoDI GTCTC 2 cut(s) 91, 506
BfaI CTAG 1 cut(s) 272
BfrI CTTAAG 1 cut(s) 536
BglII AGATCT 1 cut(s) 47
BisI GCNGC 2 cut(s) 41, 669
BlsI GCNGC 2 cut(s) 42, 670
Bme1390I CCNGG 1 cut(s) 642
Bme18I GGWCC 2 cut(s) 70, 635
BmeT110I CYCGRG 2 cut(s) 329, 530
BmgT120I GGNCC 2 cut(s) 70, 635
BmiI GGNNCC 2 cut(s) 72, 528
BmrFI CCNGG 1 cut(s) 642
BmtI GCTAGC 1 cut(s) 275
BpiI GAAGAC 1 cut(s) 161
BpmI CTGGAG 1 cut(s) 512
Bpu14I TTCGAA 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 671
BsaJI CCNNGG 2 cut(s) 131, 672
Bsc4I CCNNNNNNNGG 1 cut(s) 647
Bse1I ACTGG 2 cut(s) 187, 652
BseBI CCWGG 1 cut(s) 642
BseDI CCNNGG 2 cut(s) 131, 672
BseLI CCNNNNNNNGG 1 cut(s) 647
BseNI ACTGG 2 cut(s) 187, 652
BseRI GAGGAG 1 cut(s) 589
BseXI GCAGC 1 cut(s) 27
BseYI CCCAGC 1 cut(s) 499
BshFI GGCC 2 cut(s) 14, 671
BsiHKAI GWGCWC 2 cut(s) 330, 498
BsiHKCI CYCGRG 2 cut(s) 329, 530
BsiSI CCGG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 647
BsmAI GTCTC 2 cut(s) 91, 506
BsmFI GGGAC 1 cut(s) 56
BsmI GAATGC 1 cut(s) 275
BsnI GGCC 2 cut(s) 14, 671
BsoBI CYCGRG 2 cut(s) 329, 530
Bsp119I TTCGAA 1 cut(s) 164
Bsp1286I GDGCHC 3 cut(s) 330, 498, 531
Bsp143I GATC 3 cut(s) 47, 141, 556
Bsp19I CCATGG 2 cut(s) 131, 672
BspACI CCGC 2 cut(s) 43, 668
BspANI GGCC 2 cut(s) 14, 671
BspLI GGNNCC 2 cut(s) 72, 528
BspOI GCTAGC 1 cut(s) 275
BspPI GGATC 2 cut(s) 149, 564
BspT104I TTCGAA 1 cut(s) 164
BspTI CTTAAG 1 cut(s) 536
BsrI ACTGG 2 cut(s) 187, 652
BssECI CCNNGG 2 cut(s) 131, 672
BssMI GATC 3 cut(s) 47, 141, 556
BssSI CACGAG 1 cut(s) 192
BssT1I CCWWGG 2 cut(s) 131, 672
Bst2BI CACGAG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 642
Bst4CI ACNGT 5 cut(s) 85, 206, 389, 422, 547
BstAFI CTTAAG 1 cut(s) 536
BstBI TTCGAA 1 cut(s) 164
BstC8I GCNNGC 4 cut(s) 96, 273, 336, 714
BstDSI CCRYGG 2 cut(s) 131, 672
BstKTI GATC 3 cut(s) 50, 144, 559
BstMAI GTCTC 2 cut(s) 91, 506
BstMBI GATC 3 cut(s) 47, 141, 556
BstMWI GCNNNNNNNGC 3 cut(s) 325, 657, 674
BstNI CCWGG 1 cut(s) 642
BstSCI CCNGG 1 cut(s) 640
BstV1I GCAGC 1 cut(s) 27
BstV2I GAAGAC 1 cut(s) 161
BstX2I RGATCY 2 cut(s) 47, 556
BstYI RGATCY 2 cut(s) 47, 556
BsuRI GGCC 2 cut(s) 14, 671
BtgI CCRYGG 2 cut(s) 131, 672
BtgZI GCGATG 1 cut(s) 536
BtsIMutI CAGTG 1 cut(s) 730
Cac8I GCNNGC 4 cut(s) 96, 273, 336, 714
Cfr13I GGNCC 2 cut(s) 70, 635
CseI GACGC 1 cut(s) 248
CsiI ACCWGGT 1 cut(s) 640
Csp6I GTAC 1 cut(s) 645
CviAII CATG 2 cut(s) 132, 673
CviQI GTAC 1 cut(s) 645
DpnI GATC 3 cut(s) 49, 143, 558
DpnII GATC 3 cut(s) 47, 141, 556
EaeI YGGCCR 1 cut(s) 669
Eco130I CCWWGG 2 cut(s) 131, 672
Eco24I GRGCYC 1 cut(s) 531
Eco47I GGWCC 2 cut(s) 70, 635
Eco88I CYCGRG 2 cut(s) 329, 530
EcoRII CCWGG 1 cut(s) 640
EcoT14I CCWWGG 2 cut(s) 131, 672
EcoT38I GRGCYC 1 cut(s) 531
ErhI CCWWGG 2 cut(s) 131, 672
FaeI CATG 2 cut(s) 135, 676
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FaqI GGGAC 1 cut(s) 56
FatI CATG 2 cut(s) 131, 672
FauNDI CATATG 1 cut(s) 322
Fnu4HI GCNGC 2 cut(s) 41, 669
FriOI GRGCYC 1 cut(s) 531
Fsp4HI GCNGC 2 cut(s) 41, 669
FspBI CTAG 1 cut(s) 272
GluI GCNGC 2 cut(s) 41, 669
GsaI CCCAGC 1 cut(s) 503
GsuI CTGGAG 1 cut(s) 512
HaeIII GGCC 2 cut(s) 14, 671
HapII CCGG 1 cut(s) 11
HgaI GACGC 1 cut(s) 248
Hin1II CATG 2 cut(s) 135, 676
HincII GTYRAC 2 cut(s) 397, 430
HindII GTYRAC 2 cut(s) 397, 430
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 1 cut(s) 308
HpaI GTTAAC 2 cut(s) 397, 430
HpaII CCGG 1 cut(s) 11
HphI GGTGA 1 cut(s) 464
Hpy166II GTNNAC 3 cut(s) 397, 430, 638
Hpy188III TCNNGA 3 cut(s) 145, 491, 560
Hpy8I GTNNAC 3 cut(s) 397, 430, 638
HpyAV CCTTC 4 cut(s) 64, 171, 589, 598
HpyCH4III ACNGT 5 cut(s) 85, 206, 389, 422, 547
HpyCH4IV ACGT 1 cut(s) 506
HpyF10VI GCNNNNNNNGC 3 cut(s) 325, 657, 674
HpySE526I ACGT 1 cut(s) 506
Hsp92II CATG 2 cut(s) 135, 676
KspAI GTTAAC 2 cut(s) 397, 430
Kzo9I GATC 3 cut(s) 47, 141, 556
LmnI GCTCC 3 cut(s) 493, 526, 709
Lsp1109I GCAGC 1 cut(s) 27
MabI ACCWGGT 1 cut(s) 640
MaeI CTAG 1 cut(s) 272
MaeII ACGT 1 cut(s) 506
MaeIII GTNAC 8 cut(s) 17, 187, 236, 260, 301, 383, 416, 620
MalI GATC 3 cut(s) 49, 143, 558
MboI GATC 3 cut(s) 47, 141, 556
MboII GAAGA 3 cut(s) 126, 166, 592
MfeI CAATTG 1 cut(s) 737
MflI RGATCY 2 cut(s) 47, 556
MhlI GDGCHC 3 cut(s) 330, 498, 531
MluCI AATT 4 cut(s) 583, 679, 737, 766
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 3 cut(s) 82, 101, 147
MnlI CCTC 7 cut(s) 84, 116, 547, 567, 570, 611, 735
MseI TTAA 5 cut(s) 209, 396, 429, 537, 769
MslI CAYNNNNRTG 2 cut(s) 390, 423
MspCI CTTAAG 1 cut(s) 536
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 642
MunI CAATTG 1 cut(s) 737
Mva1269I GAATGC 1 cut(s) 275
MvaI CCWGG 1 cut(s) 642
MwoI GCNNNNNNNGC 3 cut(s) 325, 657, 674
NcoI CCATGG 2 cut(s) 131, 672
NdeI CATATG 1 cut(s) 322
NdeII GATC 3 cut(s) 47, 141, 556
NheI GCTAGC 1 cut(s) 271
NlaIII CATG 2 cut(s) 135, 676
NlaIV GGNNCC 2 cut(s) 72, 528
NmuCI GTSAC 5 cut(s) 17, 260, 301, 383, 416
NspV TTCGAA 1 cut(s) 164
PaeR7I CTCGAG 1 cut(s) 329
PctI GAATGC 1 cut(s) 275
PflFI GACNNNGTC 1 cut(s) 307
PkrI GCNGC 2 cut(s) 42, 670
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
Psp6I CCWGG 1 cut(s) 640
PspFI CCCAGC 1 cut(s) 499
PspGI CCWGG 1 cut(s) 640
PspN4I GGNNCC 2 cut(s) 72, 528
PspPI GGNCC 2 cut(s) 70, 635
PspXI VCTCGAGB 1 cut(s) 329
PsuI RGATCY 2 cut(s) 47, 556
PsyI GACNNNGTC 1 cut(s) 307
RsaI GTAC 1 cut(s) 646
RsaNI GTAC 1 cut(s) 645
RseI CAYNNNNRTG 2 cut(s) 390, 423
SaqAI TTAA 5 cut(s) 209, 396, 429, 537, 769
SatI GCNGC 2 cut(s) 41, 669
Sau3AI GATC 3 cut(s) 47, 141, 556
Sau96I GGNCC 2 cut(s) 70, 635
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 642
SduI GDGCHC 3 cut(s) 330, 498, 531
SexAI ACCWGGT 1 cut(s) 640
Sfr274I CTCGAG 1 cut(s) 329
SfuI TTCGAA 1 cut(s) 164
SinI GGWCC 2 cut(s) 70, 635
SlaI CTCGAG 1 cut(s) 329
SmiMI CAYNNNNRTG 2 cut(s) 390, 423
SmlI CTYRAG 3 cut(s) 329, 536, 686
SmoI CTYRAG 3 cut(s) 329, 536, 686
Sse9I AATT 4 cut(s) 583, 679, 737, 766
SsiI CCGC 2 cut(s) 43, 668
SspI AATATT 1 cut(s) 7
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 1 cut(s) 640
StyI CCWWGG 2 cut(s) 131, 672
TaaI ACNGT 5 cut(s) 85, 206, 389, 422, 547
TaiI ACGT 1 cut(s) 509
TaqI TCGA 5 cut(s) 108, 164, 330, 482, 561
TaqII GACCGA 1 cut(s) 320
TasI AATT 4 cut(s) 583, 679, 737, 766
TauI GCSGC 1 cut(s) 671
Tru1I TTAA 5 cut(s) 209, 396, 429, 537, 769
Tru9I TTAA 5 cut(s) 209, 396, 429, 537, 769
TscAI CASTG 1 cut(s) 730
TseFI GTSAC 5 cut(s) 17, 260, 301, 383, 416
TseI GCWGC 1 cut(s) 40
Tsp45I GTSAC 5 cut(s) 17, 260, 301, 383, 416
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 730
Tth111I GACNNNGTC 1 cut(s) 307
Vha464I CTTAAG 1 cut(s) 536
VpaK11BI GGWCC 2 cut(s) 70, 635
XapI RAATTY 1 cut(s) 583
XhoI CTCGAG 1 cut(s) 329
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.