Rh2CG137800

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0019782
Physical Location & Seq
Reverse (-)
12155481 .. 12156942
1462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG137800.1

Sequence Viewer

Length: 930 bp
ATGAATATTCCGGCCTGTCACACAACCAAGTCTTTGAAGCTGCGGAGATCTACCTTCCAACCAAGATTGGTCCCTCCAACGACTGTCTCCAAGCCAGCAAAACACCTCGACAGAAGAAAATCCAACTTGCCATGGAAAAGGATCAAGAAGTTGAAGACACCTTCGAAAACATCATACTCAACTGGCGTTACTCGTGCGTTGAACTGTTTAACAACAACAACAGCTACCCTACAATGTAACTCATCAGGTATTCACAAGCGTCACTTTGAGCTAGCATTCCACAAGAACCACAAAGCAAAAGTGACCGAGTCTTACTTGCCATATGTGCTCGAGCAGGCTAAAGCTATCAAAGAAAAGGAAAACATTGTGAAGCTTTATACCCGTCACGGTAATGTTAACTATGCTTATGGTAGCCGTCACGGTAATGTTAACTATGCTTATGGTGGTAGTGGTGATGGCATAGAGTTAGGCATTTGGCGTTCGATAAGTCTGGAGCACCCAGCTACGTTTGAGACAATGGCGATGGAGCCCGAGCTTAAGAGAACAGTTATAGAGGATCTCGATAGGTTTGTGAGGAGGAAGAATTTTTATAGGAAGGTTGGGAAGGCTTGGAAAAGAGGTTACTTGTTGTATGGTCCACCTGGTACTGGCAAATCCAGCTTGGTTGCGGCCATGGCGAATTATCTCAAGTTTGATGTTTATGATTTGGAGCTTGCTTCTATGGTCTGTGGTCGAGCTGTGGCCTGTGGAGATGAGAGAATCATAGTGTTCACCACCAACCATAAGGATGATAAGCTAGACCCTGCGTTGTTGCGCCCTGGTCTACCGGACTTGCACATTCACTTGTCATGTTGCACCCCGAGTGGGTTCACAACCTTGGCATTCAAGAAAGCAACCCTCATCCCCTGTGTGGAGATATTGAAGGCTTGA

Protein Analysis

309

Amino Acids

34.75

Weight (kDa)

9.81

Isoelectric Point (pI)

49.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 208 - 242 2.2e-06 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019782)

Species Orthologous Gene IDs
malus_domestica MD05G1250700.v1.1
rosa_chinensis RchiOBHm_Chr2g0099881
rosa_laevigata RLG00000016919
rosa_rugosa Rorug02G0083700
rosa_samantha Rh2BG136100 Rh2CG137800 Rh2DG138200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 823
AciI CCGC 2 cut(s) 43, 668
AclWI GGATC 2 cut(s) 149, 564
AcoI YGGCCR 1 cut(s) 669
AcsI RAATTY 1 cut(s) 583
AfaI GTAC 1 cut(s) 646
AfiI CCNNNNNNNGG 3 cut(s) 647, 864, 910
AflII CTTAAG 1 cut(s) 536
AgsI TTSAA 5 cut(s) 37, 154, 202, 886, 922
AjnI CCWGG 2 cut(s) 640, 817
Alw21I GWGCWC 2 cut(s) 330, 498
Alw26I GTCTC 2 cut(s) 91, 506
AlwI GGATC 2 cut(s) 149, 564
Ama87I CYCGRG 3 cut(s) 329, 530, 859
AoxI GGCC 3 cut(s) 12, 669, 741
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 583
AspLEI GCGC 1 cut(s) 816
AspS9I GGNCC 2 cut(s) 70, 635
AsuHPI GGTGA 2 cut(s) 464, 763
AsuII TTCGAA 1 cut(s) 164
AsuNHI GCTAGC 1 cut(s) 271
AvaI CYCGRG 3 cut(s) 329, 530, 859
AvaII GGWCC 2 cut(s) 70, 635
BanII GRGCYC 1 cut(s) 531
BauI CACGAG 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 161
Bbv12I GWGCWC 2 cut(s) 330, 498
BbvI GCAGC 1 cut(s) 27
BccI CCATC 2 cut(s) 449, 517
BceAI ACGGC 1 cut(s) 399
BciT130I CCWGG 2 cut(s) 642, 819
BcoDI GTCTC 2 cut(s) 91, 506
BfaI CTAG 2 cut(s) 272, 797
BfrI CTTAAG 1 cut(s) 536
BglII AGATCT 1 cut(s) 47
BisI GCNGC 2 cut(s) 41, 669
BlsI GCNGC 2 cut(s) 42, 670
Bme1390I CCNGG 2 cut(s) 642, 819
Bme18I GGWCC 2 cut(s) 70, 635
BmeT110I CYCGRG 3 cut(s) 329, 530, 859
BmgT120I GGNCC 2 cut(s) 70, 635
BmiI GGNNCC 2 cut(s) 72, 528
BmrFI CCNGG 2 cut(s) 642, 819
BmtI GCTAGC 1 cut(s) 275
BpiI GAAGAC 1 cut(s) 161
BpmI CTGGAG 1 cut(s) 512
Bpu14I TTCGAA 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 671
BsaJI CCNNGG 4 cut(s) 131, 672, 817, 876
BsaWI WCCGGW 1 cut(s) 826
Bsc4I CCNNNNNNNGG 3 cut(s) 647, 864, 910
Bse1I ACTGG 2 cut(s) 187, 652
BseBI CCWGG 2 cut(s) 642, 819
BseDI CCNNGG 4 cut(s) 131, 672, 817, 876
BseGI GGATG 2 cut(s) 793, 900
BseLI CCNNNNNNNGG 3 cut(s) 647, 864, 910
BseNI ACTGG 2 cut(s) 187, 652
BseRI GAGGAG 1 cut(s) 589
BseXI GCAGC 1 cut(s) 27
BseYI CCCAGC 1 cut(s) 499
BshFI GGCC 3 cut(s) 14, 671, 743
BsiHKAI GWGCWC 2 cut(s) 330, 498
BsiHKCI CYCGRG 3 cut(s) 329, 530, 859
BsiSI CCGG 2 cut(s) 11, 827
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 3 cut(s) 647, 864, 910
BsmAI GTCTC 2 cut(s) 91, 506
BsmFI GGGAC 1 cut(s) 56
BsmI GAATGC 2 cut(s) 275, 881
BsnI GGCC 3 cut(s) 14, 671, 743
BsoBI CYCGRG 3 cut(s) 329, 530, 859
Bsp119I TTCGAA 1 cut(s) 164
Bsp1286I GDGCHC 3 cut(s) 330, 498, 531
Bsp143I GATC 3 cut(s) 47, 141, 556
Bsp19I CCATGG 2 cut(s) 131, 672
BspACI CCGC 2 cut(s) 43, 668
BspANI GGCC 3 cut(s) 14, 671, 743
BspLI GGNNCC 2 cut(s) 72, 528
BspOI GCTAGC 1 cut(s) 275
BspPI GGATC 2 cut(s) 149, 564
BspT104I TTCGAA 1 cut(s) 164
BspTI CTTAAG 1 cut(s) 536
BsrI ACTGG 2 cut(s) 187, 652
BssECI CCNNGG 4 cut(s) 131, 672, 817, 876
BssMI GATC 3 cut(s) 47, 141, 556
BssSI CACGAG 1 cut(s) 192
BssT1I CCWWGG 3 cut(s) 131, 672, 876
Bst2BI CACGAG 1 cut(s) 192
Bst2UI CCWGG 2 cut(s) 642, 819
Bst4CI ACNGT 5 cut(s) 85, 206, 389, 422, 547
BstAFI CTTAAG 1 cut(s) 536
BstBI TTCGAA 1 cut(s) 164
BstC8I GCNNGC 4 cut(s) 96, 273, 336, 714
BstDSI CCRYGG 2 cut(s) 131, 672
BstF5I GGATG 2 cut(s) 793, 900
BstHHI GCGC 1 cut(s) 816
BstKTI GATC 3 cut(s) 50, 144, 559
BstMAI GTCTC 2 cut(s) 91, 506
BstMBI GATC 3 cut(s) 47, 141, 556
BstMWI GCNNNNNNNGC 3 cut(s) 325, 657, 674
BstNI CCWGG 2 cut(s) 642, 819
BstSCI CCNGG 2 cut(s) 640, 817
BstV1I GCAGC 1 cut(s) 27
BstV2I GAAGAC 1 cut(s) 161
BstX2I RGATCY 2 cut(s) 47, 556
BstYI RGATCY 2 cut(s) 47, 556
BsuRI GGCC 3 cut(s) 14, 671, 743
BtgI CCRYGG 2 cut(s) 131, 672
BtgZI GCGATG 1 cut(s) 536
BtsCI GGATG 2 cut(s) 793, 900
Cac8I GCNNGC 4 cut(s) 96, 273, 336, 714
CfoI GCGC 1 cut(s) 816
Cfr13I GGNCC 2 cut(s) 70, 635
CseI GACGC 1 cut(s) 248
CsiI ACCWGGT 1 cut(s) 640
Csp6I GTAC 1 cut(s) 645
CviAII CATG 3 cut(s) 132, 673, 849
CviQI GTAC 1 cut(s) 645
DpnI GATC 3 cut(s) 49, 143, 558
DpnII GATC 3 cut(s) 47, 141, 556
EaeI YGGCCR 1 cut(s) 669
Eco130I CCWWGG 3 cut(s) 131, 672, 876
Eco24I GRGCYC 1 cut(s) 531
Eco47I GGWCC 2 cut(s) 70, 635
Eco88I CYCGRG 3 cut(s) 329, 530, 859
EcoRII CCWGG 2 cut(s) 640, 817
EcoT14I CCWWGG 3 cut(s) 131, 672, 876
EcoT38I GRGCYC 1 cut(s) 531
ErhI CCWWGG 3 cut(s) 131, 672, 876
FaeI CATG 3 cut(s) 135, 676, 852
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FaqI GGGAC 1 cut(s) 56
FatI CATG 3 cut(s) 131, 672, 848
FauNDI CATATG 1 cut(s) 322
FblI GTMKAC 1 cut(s) 823
Fnu4HI GCNGC 2 cut(s) 41, 669
FokI GGATG 2 cut(s) 800, 887
FriOI GRGCYC 1 cut(s) 531
Fsp4HI GCNGC 2 cut(s) 41, 669
FspBI CTAG 2 cut(s) 272, 797
GlaI GCGC 1 cut(s) 815
GluI GCNGC 2 cut(s) 41, 669
GsaI CCCAGC 1 cut(s) 503
GsuI CTGGAG 1 cut(s) 512
HaeIII GGCC 3 cut(s) 14, 671, 743
HapII CCGG 2 cut(s) 11, 827
HgaI GACGC 1 cut(s) 248
HhaI GCGC 1 cut(s) 816
Hin1II CATG 3 cut(s) 135, 676, 852
Hin6I GCGC 1 cut(s) 814
HinP1I GCGC 1 cut(s) 814
HincII GTYRAC 2 cut(s) 397, 430
HindII GTYRAC 2 cut(s) 397, 430
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 2 cut(s) 308, 759
HpaI GTTAAC 2 cut(s) 397, 430
HpaII CCGG 2 cut(s) 11, 827
HphI GGTGA 2 cut(s) 464, 763
Hpy166II GTNNAC 6 cut(s) 397, 430, 638, 771, 824, 870
Hpy188III TCNNGA 4 cut(s) 145, 491, 560, 886
Hpy8I GTNNAC 6 cut(s) 397, 430, 638, 771, 824, 870
HpyAV CCTTC 5 cut(s) 64, 171, 589, 598, 916
HpyCH4III ACNGT 5 cut(s) 85, 206, 389, 422, 547
HpyCH4IV ACGT 1 cut(s) 506
HpyCH4V TGCA 2 cut(s) 835, 855
HpyF10VI GCNNNNNNNGC 3 cut(s) 325, 657, 674
HpySE526I ACGT 1 cut(s) 506
Hsp92II CATG 3 cut(s) 135, 676, 852
HspAI GCGC 1 cut(s) 814
KspAI GTTAAC 2 cut(s) 397, 430
Kzo9I GATC 3 cut(s) 47, 141, 556
LmnI GCTCC 3 cut(s) 493, 526, 709
Lsp1109I GCAGC 1 cut(s) 27
MabI ACCWGGT 1 cut(s) 640
MaeI CTAG 2 cut(s) 272, 797
MaeII ACGT 1 cut(s) 506
MaeIII GTNAC 8 cut(s) 17, 187, 236, 260, 301, 383, 416, 620
MalI GATC 3 cut(s) 49, 143, 558
MboI GATC 3 cut(s) 47, 141, 556
MboII GAAGA 3 cut(s) 126, 166, 592
MflI RGATCY 2 cut(s) 47, 556
MhlI GDGCHC 3 cut(s) 330, 498, 531
MluCI AATT 2 cut(s) 583, 679
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 3 cut(s) 82, 101, 147
MnlI CCTC 7 cut(s) 84, 116, 547, 567, 570, 611, 908
MseI TTAA 4 cut(s) 209, 396, 429, 537
MslI CAYNNNNRTG 3 cut(s) 390, 423, 786
MspCI CTTAAG 1 cut(s) 536
MspI CCGG 2 cut(s) 11, 827
MspR9I CCNGG 2 cut(s) 642, 819
Mva1269I GAATGC 2 cut(s) 275, 881
MvaI CCWGG 2 cut(s) 642, 819
MwoI GCNNNNNNNGC 3 cut(s) 325, 657, 674
NcoI CCATGG 2 cut(s) 131, 672
NdeI CATATG 1 cut(s) 322
NdeII GATC 3 cut(s) 47, 141, 556
NheI GCTAGC 1 cut(s) 271
NlaIII CATG 3 cut(s) 135, 676, 852
NlaIV GGNNCC 2 cut(s) 72, 528
NmuCI GTSAC 5 cut(s) 17, 260, 301, 383, 416
NspV TTCGAA 1 cut(s) 164
PaeR7I CTCGAG 1 cut(s) 329
PctI GAATGC 2 cut(s) 275, 881
PfeI GAWTC 1 cut(s) 759
PflFI GACNNNGTC 1 cut(s) 307
PkrI GCNGC 2 cut(s) 42, 670
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
Psp6I CCWGG 2 cut(s) 640, 817
PspFI CCCAGC 1 cut(s) 499
PspGI CCWGG 2 cut(s) 640, 817
PspN4I GGNNCC 2 cut(s) 72, 528
PspPI GGNCC 2 cut(s) 70, 635
PspXI VCTCGAGB 1 cut(s) 329
PsuI RGATCY 2 cut(s) 47, 556
PsyI GACNNNGTC 1 cut(s) 307
RsaI GTAC 1 cut(s) 646
RsaNI GTAC 1 cut(s) 645
RseI CAYNNNNRTG 3 cut(s) 390, 423, 786
SaqAI TTAA 4 cut(s) 209, 396, 429, 537
SatI GCNGC 2 cut(s) 41, 669
Sau3AI GATC 3 cut(s) 47, 141, 556
Sau96I GGNCC 2 cut(s) 70, 635
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 2 cut(s) 642, 819
SduI GDGCHC 3 cut(s) 330, 498, 531
SexAI ACCWGGT 1 cut(s) 640
Sfr274I CTCGAG 1 cut(s) 329
SfuI TTCGAA 1 cut(s) 164
SinI GGWCC 2 cut(s) 70, 635
SlaI CTCGAG 1 cut(s) 329
SmiMI CAYNNNNRTG 3 cut(s) 390, 423, 786
SmlI CTYRAG 3 cut(s) 329, 536, 686
SmoI CTYRAG 3 cut(s) 329, 536, 686
Sse9I AATT 2 cut(s) 583, 679
SsiI CCGC 2 cut(s) 43, 668
SspI AATATT 1 cut(s) 7
SspMI CTAG 2 cut(s) 272, 797
StyD4I CCNGG 2 cut(s) 640, 817
StyI CCWWGG 3 cut(s) 131, 672, 876
TaaI ACNGT 5 cut(s) 85, 206, 389, 422, 547
TaiI ACGT 1 cut(s) 509
TaqI TCGA 6 cut(s) 108, 164, 330, 482, 561, 733
TaqII GACCGA 1 cut(s) 320
TasI AATT 2 cut(s) 583, 679
TauI GCSGC 1 cut(s) 671
TfiI GAWTC 1 cut(s) 759
Tru1I TTAA 4 cut(s) 209, 396, 429, 537
Tru9I TTAA 4 cut(s) 209, 396, 429, 537
TseFI GTSAC 5 cut(s) 17, 260, 301, 383, 416
TseI GCWGC 1 cut(s) 40
Tsp45I GTSAC 5 cut(s) 17, 260, 301, 383, 416
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 307
Vha464I CTTAAG 1 cut(s) 536
VpaK11BI GGWCC 2 cut(s) 70, 635
XapI RAATTY 1 cut(s) 583
XhoI CTCGAG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 823
XspI CTAG 2 cut(s) 272, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.