Rorug02G0083700

respiratory chain complex III assembly

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
6729246 .. 6730769
1524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0083700.1

Sequence Viewer

Length: 1524 bp
ATGGGCAGGATGATGAGAGGTAACTACAATCGTTCTTCTTCTGGCCCTTCAAACTGCGTCAGGAGAACAAGTTCTGCGTCTTCGAACTTCAAGGCATCTAGACAAAAGGTTGCTCCACCAAGAAAAAGAGACGTTCTCCCCGCTCTCATGCAAGACATTCACAGGATCGACACTCAAACACTTAGAAAAAAGCTCCAGGACACAGAAACACCAGGGTCAATAAAGCGCGAGATTAAACGCGAAATAGAAACTAGACAACATGATCAAGATGATGATGCTGCGACTGCTGTGATTGTGGAAAACACACCTCAAGTAGCACCTCAACCTGCAAAAGCCTCTCCTTGGTTAATTGACAAGTTGTATGACAAACGTGGACCGGAGCGAGCCAAGGCGTTGGCCGGAGTAATTGCACTGCTAAACCAAGAGTTGGATCATGAAGACTTGAAAAAGAGTTATGTTGTAGAGCTTTTCTACCGATGCTTGTGCGGTGTAAAGAAGGGTTCCACCAAAGAGGTTCAGTATTCATTGAAAGTTATCGGCTTGCTCTCAATCATCGTCGATTGTCAAGACAAGATGTCTGAAATTTACAGGGAGTTTCTTGCTGTATCTTCCACCACTGCTTGTCTAAAGAAGGCTGGAACCAACACAACAAAGATGTTGGAATGTTTGGGAGTTGTTACCTTTTTCGGTGGAATTAATGCAGAGGAGACTCAAGCTGCAATGAAGGTTATTTGGGACTTCATGATGAATTTCAAATCGGAATCCGGTAGTGATGATGTAAATAACCGAAAGAAGCATTCTTCGGAGATCCTAGTTGCTGCAATATATTCTTGGCTGTTTCTTCTTACTAGCATGGAAAAAGGGGGATTGCACTATTGGACAGGGGCAATTTCCTTCTTCATGAACCTGTTGGACAACTATGATGACACAGTTCATGCGGCAGCATGTGAAGCACTAGCATTGATTTTCGAGATTGATAGCCTTGACAAATTCTGGAATGGAGCAAATGATTCAAGCTTGTCATATTCGCAGTTGAGAGAAACACTCAGGGAGATGATTTTGAAGAAATTGAGCAGTCTAAACATGAACCCACATGTTGTGAAGTATTTCAAGACTCTTGATTTCCCGGGAGCACGTATACCTCTTTGTGAAAAAGAACTGGTATTACCGTCATGGTATCAGTGGATTCAATTCGATTATTTGAGGAGTCTGCTAGGGAATGAGTTTGAAAACTACATGGCCAAGGAAGACAAACTCCAGAACTTTTTTGAGTTCAACCCTTATAGAAACAACAATGTGGGTGGAGAACTATATCAGTCTACGATCGAAAAGAATCAAAAGAGCAGGGAAAAAAATTTCAGGCCAGAAGGAAGAGATCCACAAACACTGACAGCAAAACAAAGGAAGAAAGAGAAAGTTCTGAGAACTTCTTCTCTGGACAAAGAACAGACAAAACAAAGGACCAAACACAGGCAAATGTCAGAGGAATTGAAGTGGGGGTGGGAGGATTCAGTACATAAATGA

Protein Analysis

507

Amino Acids

58.2

Weight (kDa)

8.96

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IFRD PF05004 116 - 358 3.5e-37 Interferon-related developmental regulator (IFRD)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019782)

Species Orthologous Gene IDs
malus_domestica MD05G1250700.v1.1
rosa_chinensis RchiOBHm_Chr2g0099881
rosa_laevigata RLG00000016919
rosa_rugosa Rorug02G0083700
rosa_samantha Rh2BG136100 Rh2CG137800 Rh2DG138200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 334
AccB7I CCANNNNNTGG 1 cut(s) 427
AccBSI CCGCTC 1 cut(s) 143
AccI GTMKAC 2 cut(s) 1138, 1319
AccII CGCG 2 cut(s) 228, 240
AciI CCGC 3 cut(s) 141, 486, 938
AclWI GGATC 4 cut(s) 173, 438, 802, 1370
AcoI YGGCCR 2 cut(s) 396, 1239
AcsI RAATTY 4 cut(s) 582, 748, 989, 1354
AfaI GTAC 1 cut(s) 1515
AfiI CCNNNNNNNGG 3 cut(s) 342, 427, 1470
AflIII ACRYGT 1 cut(s) 1093
AhdI GACNNNNNGTC 1 cut(s) 574
AjnI CCWGG 2 cut(s) 195, 211
AloI GAACNNNNNNTCC 2 cut(s) 55, 87
AluBI AGCT 4 cut(s) 193, 466, 716, 1017
AluI AGCT 4 cut(s) 193, 466, 716, 1017
Alw21I GWGCWC 1 cut(s) 1135
Alw26I GTCTC 2 cut(s) 123, 701
AlwI GGATC 4 cut(s) 173, 438, 802, 1370
Ama87I CYCGRG 1 cut(s) 1126
AoxI GGCC 4 cut(s) 43, 396, 1239, 1361
ApeKI GCWGC 4 cut(s) 278, 716, 818, 941
ApoI RAATTY 4 cut(s) 582, 748, 989, 1354
AseI ATTAAT 1 cut(s) 696
Asp700I GAANNNNTTC 3 cut(s) 70, 1106, 1429
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 3 cut(s) 44, 374, 1461
AsuC2I CCSGG 2 cut(s) 1127, 1128
AsuII TTCGAA 1 cut(s) 83
AvaI CYCGRG 1 cut(s) 1126
AvaII GGWCC 2 cut(s) 374, 1461
BalI TGGCCA 1 cut(s) 1241
BbsI GAAGAC 3 cut(s) 72, 444, 1254
Bbv12I GWGCWC 1 cut(s) 1135
BbvI GCAGC 4 cut(s) 265, 703, 805, 953
BcgI CGANNNNNNTGC 2 cut(s) 465, 499
BciT130I CCWGG 2 cut(s) 197, 213
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 2 cut(s) 1127, 1128
BcoDI GTCTC 2 cut(s) 123, 701
BfaI CTAG 6 cut(s) 99, 252, 812, 849, 956, 1214
BfuAI ACCTGC 1 cut(s) 334
BisI GCNGC 5 cut(s) 279, 717, 819, 939, 942
BlsI GCNGC 5 cut(s) 280, 718, 820, 940, 943
Bme1390I CCNGG 4 cut(s) 197, 213, 1127, 1128
Bme18I GGWCC 2 cut(s) 374, 1461
BmeRI GACNNNNNGTC 1 cut(s) 574
BmeT110I CYCGRG 1 cut(s) 1126
BmgT120I GGNCC 3 cut(s) 44, 374, 1461
BmiI GGNNCC 2 cut(s) 502, 640
BmrFI CCNGG 4 cut(s) 197, 213, 1127, 1128
BmsI GCATC 3 cut(s) 104, 265, 467
BpiI GAAGAC 3 cut(s) 72, 444, 1254
BplI GAGNNNNNCTC 4 cut(s) 120, 152, 1029, 1061
BpmI CTGGAG 2 cut(s) 179, 1241
Bpu14I TTCGAA 1 cut(s) 83
BpuEI CTTGAG 2 cut(s) 294, 696
BpuMI CCSGG 2 cut(s) 1127, 1128
BsaAI YACGTR 1 cut(s) 1136
BsaJI CCNNGG 5 cut(s) 212, 341, 387, 1126, 1242
BsaWI WCCGGW 2 cut(s) 376, 764
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bsc4I CCNNNNNNNGG 3 cut(s) 342, 427, 1470
Bse1I ACTGG 1 cut(s) 1164
Bse3DI GCAATG 1 cut(s) 726
BseBI CCWGG 2 cut(s) 197, 213
BseDI CCNNGG 5 cut(s) 212, 341, 387, 1126, 1242
BseGI GGATG 1 cut(s) 15
BseLI CCNNNNNNNGG 3 cut(s) 342, 427, 1470
BseMI GCAATG 1 cut(s) 726
BseMII CTCAG 2 cut(s) 1060, 1412
BseNI ACTGG 1 cut(s) 1164
BseRI GAGGAG 2 cut(s) 719, 1219
BseXI GCAGC 4 cut(s) 265, 703, 805, 953
Bsh1236I CGCG 2 cut(s) 228, 240
Bsh1285I CGRYCG 1 cut(s) 1326
BshFI GGCC 4 cut(s) 45, 398, 1241, 1363
BsiEI CGRYCG 1 cut(s) 1326
BsiHKAI GWGCWC 1 cut(s) 1135
BsiHKCI CYCGRG 1 cut(s) 1126
BsiSI CCGG 4 cut(s) 377, 399, 765, 1127
BslFI GGGAC 1 cut(s) 749
BslI CCNNNNNNNGG 3 cut(s) 342, 427, 1470
BsmAI GTCTC 2 cut(s) 123, 701
BsmBI CGTCTC 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 749
BsmI GAATGC 1 cut(s) 796
BsnI GGCC 4 cut(s) 45, 398, 1241, 1363
BsoBI CYCGRG 1 cut(s) 1126
Bsp119I TTCGAA 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 1135
Bsp143I GATC 6 cut(s) 165, 262, 430, 807, 1323, 1375
BspACI CCGC 3 cut(s) 141, 486, 938
BspANI GGCC 4 cut(s) 45, 398, 1241, 1363
BspCNI CTCAG 2 cut(s) 1059, 1413
BspFNI CGCG 2 cut(s) 228, 240
BspHI TCATGA 3 cut(s) 433, 741, 900
BspLI GGNNCC 2 cut(s) 502, 640
BspMI ACCTGC 1 cut(s) 334
BspPI GGATC 4 cut(s) 173, 438, 802, 1370
BspT104I TTCGAA 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 726
BsrI ACTGG 1 cut(s) 1164
BssECI CCNNGG 5 cut(s) 212, 341, 387, 1126, 1242
BssMI GATC 6 cut(s) 165, 262, 430, 807, 1323, 1375
BssNAI GTATAC 1 cut(s) 1139
BssT1I CCWWGG 3 cut(s) 341, 387, 1242
Bst1107I GTATAC 1 cut(s) 1139
Bst2UI CCWGG 2 cut(s) 197, 213
Bst4CI ACNGT 2 cut(s) 931, 1170
Bst6I CTCTTC 1 cut(s) 1366
BstBAI YACGTR 1 cut(s) 1136
BstBI TTCGAA 1 cut(s) 83
BstC8I GCNNGC 2 cut(s) 384, 542
BstDEI CTNAG 3 cut(s) 182, 1046, 1421
BstF5I GGATG 1 cut(s) 15
BstFNI CGCG 2 cut(s) 228, 240
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 6 cut(s) 168, 265, 433, 810, 1326, 1378
BstMAI GTCTC 2 cut(s) 123, 701
BstMBI GATC 6 cut(s) 165, 262, 430, 807, 1323, 1375
BstMCI CGRYCG 1 cut(s) 1326
BstMWI GCNNNNNNNGC 2 cut(s) 284, 950
BstNI CCWGG 2 cut(s) 197, 213
BstNSI RCATGY 2 cut(s) 948, 1097
BstSCI CCNGG 4 cut(s) 195, 211, 1125, 1126
BstUI CGCG 2 cut(s) 228, 240
BstV1I GCAGC 4 cut(s) 265, 703, 805, 953
BstV2I GAAGAC 3 cut(s) 72, 444, 1254
BstX2I RGATCY 2 cut(s) 807, 1375
BstXI CCANNNNNNTGG 1 cut(s) 394
BstYI RGATCY 2 cut(s) 807, 1375
BstZ17I GTATAC 1 cut(s) 1139
BsuRI GGCC 4 cut(s) 45, 398, 1241, 1363
BtsCI GGATG 1 cut(s) 15
BtsI GCAGTG 2 cut(s) 410, 615
BtsIMutI CAGTG 4 cut(s) 410, 615, 1187, 1385
BveI ACCTGC 1 cut(s) 334
Cac8I GCNNGC 2 cut(s) 384, 542
CciI TCATGA 3 cut(s) 433, 741, 900
CfoI GCGC 1 cut(s) 228
Cfr13I GGNCC 3 cut(s) 44, 374, 1461
Cfr9I CCCGGG 1 cut(s) 1126
CseI GACGC 2 cut(s) 46, 66
Csp6I GTAC 1 cut(s) 1514
CspCI CAANNNNNGTGG 2 cut(s) 1282, 1317
CviQI GTAC 1 cut(s) 1514
DdeI CTNAG 3 cut(s) 182, 1046, 1421
DpnI GATC 6 cut(s) 167, 264, 432, 809, 1325, 1377
DpnII GATC 6 cut(s) 165, 262, 430, 807, 1323, 1375
DriI GACNNNNNGTC 1 cut(s) 574
EaeI YGGCCR 2 cut(s) 396, 1239
Eam1104I CTCTTC 1 cut(s) 1366
Eam1105I GACNNNNNGTC 1 cut(s) 574
EarI CTCTTC 1 cut(s) 1366
Eco130I CCWWGG 3 cut(s) 341, 387, 1242
Eco47I GGWCC 2 cut(s) 374, 1461
Eco88I CYCGRG 1 cut(s) 1126
EcoRII CCWGG 2 cut(s) 195, 211
EcoT14I CCWWGG 3 cut(s) 341, 387, 1242
ErhI CCWWGG 3 cut(s) 341, 387, 1242
Esp3I CGTCTC 1 cut(s) 123
FaqI GGGAC 1 cut(s) 749
FauI CCCGC 1 cut(s) 148
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 2 cut(s) 1138, 1319
Fnu4HI GCNGC 5 cut(s) 279, 717, 819, 939, 942
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 5 cut(s) 279, 717, 819, 939, 942
FspBI CTAG 6 cut(s) 99, 252, 812, 849, 956, 1214
GlaI GCGC 1 cut(s) 227
GluI GCNGC 5 cut(s) 279, 717, 819, 939, 942
GsuI CTGGAG 2 cut(s) 179, 1241
HaeIII GGCC 4 cut(s) 45, 398, 1241, 1363
HapII CCGG 4 cut(s) 377, 399, 765, 1127
HgaI GACGC 2 cut(s) 46, 66
HhaI GCGC 1 cut(s) 228
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 1015
HinfI GANTC 8 cut(s) 709, 761, 1010, 1114, 1186, 1207, 1333, 1508
HpaII CCGG 4 cut(s) 377, 399, 765, 1127
Hpy166II GTNNAC 3 cut(s) 374, 1139, 1320
Hpy188I TCNGA 5 cut(s) 580, 760, 805, 1422, 1483
Hpy8I GTNNAC 3 cut(s) 374, 1139, 1320
Hpy99I CGWCG 1 cut(s) 560
HpyAV CCTTC 6 cut(s) 57, 490, 625, 718, 904, 1361
HpyCH4III ACNGT 2 cut(s) 931, 1170
HpyCH4IV ACGT 3 cut(s) 132, 370, 1135
HpyCH4V TGCA 7 cut(s) 151, 329, 410, 701, 719, 821, 871
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 950
HpyF3I CTNAG 3 cut(s) 182, 1046, 1421
HpySE526I ACGT 3 cut(s) 132, 370, 1135
HspAI GCGC 1 cut(s) 226
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 6 cut(s) 165, 262, 430, 807, 1323, 1375
LmnI GCTCC 5 cut(s) 118, 198, 379, 1001, 1130
Lsp1109I GCAGC 4 cut(s) 265, 703, 805, 953
LweI GCATC 3 cut(s) 104, 265, 467
MaeI CTAG 6 cut(s) 99, 252, 812, 849, 956, 1214
MaeII ACGT 3 cut(s) 132, 370, 1135
MaeIII GTNAC 2 cut(s) 20, 676
MalI GATC 6 cut(s) 167, 264, 432, 809, 1325, 1377
MbiI CCGCTC 1 cut(s) 143
MboI GATC 6 cut(s) 165, 262, 430, 807, 1323, 1375
MflI RGATCY 2 cut(s) 807, 1375
MhlI GDGCHC 1 cut(s) 1135
MlsI TGGCCA 1 cut(s) 1241
MluNI TGGCCA 1 cut(s) 1241
MlyI GAGTC 3 cut(s) 703, 1108, 1216
MmeI TCCRAC 3 cut(s) 408, 639, 891
Mox20I TGGCCA 1 cut(s) 1241
MroXI GAANNNNTTC 3 cut(s) 70, 1106, 1429
MscI TGGCCA 1 cut(s) 1241
MseI TTAA 3 cut(s) 234, 347, 696
Msp20I TGGCCA 1 cut(s) 1241
MspI CCGG 4 cut(s) 377, 399, 765, 1127
MspR9I CCNGG 4 cut(s) 197, 213, 1127, 1128
Mva1269I GAATGC 1 cut(s) 796
MvaI CCWGG 2 cut(s) 197, 213
MvnI CGCG 2 cut(s) 228, 240
MwoI GCNNNNNNNGC 2 cut(s) 284, 950
NciI CCSGG 2 cut(s) 1127, 1128
NdeII GATC 6 cut(s) 165, 262, 430, 807, 1323, 1375
NlaIV GGNNCC 2 cut(s) 502, 640
NspI RCATGY 2 cut(s) 948, 1097
NspV TTCGAA 1 cut(s) 83
PagI TCATGA 3 cut(s) 433, 741, 900
PciI ACATGT 1 cut(s) 1093
PctI GAATGC 1 cut(s) 796
PdmI GAANNNNTTC 3 cut(s) 70, 1106, 1429
PfeI GAWTC 5 cut(s) 761, 1010, 1186, 1333, 1508
PflMI CCANNNNNTGG 1 cut(s) 427
PfoI TCCNGGA 1 cut(s) 195
PkrI GCNGC 5 cut(s) 280, 718, 820, 940, 943
Ple19I CGATCG 1 cut(s) 1326
PleI GAGTC 3 cut(s) 703, 1108, 1215
PpsI GAGTC 3 cut(s) 703, 1108, 1215
Ppu21I YACGTR 1 cut(s) 1136
PscI ACATGT 1 cut(s) 1093
PshBI ATTAAT 1 cut(s) 696
Psp6I CCWGG 2 cut(s) 195, 211
PspGI CCWGG 2 cut(s) 195, 211
PspN4I GGNNCC 2 cut(s) 502, 640
PspPI GGNCC 3 cut(s) 44, 374, 1461
PsrI GAACNNNNNNTAC 2 cut(s) 1149, 1181
PsuI RGATCY 2 cut(s) 807, 1375
PvuI CGATCG 1 cut(s) 1326
RsaI GTAC 1 cut(s) 1515
RsaNI GTAC 1 cut(s) 1514
SaqAI TTAA 3 cut(s) 234, 347, 696
SatI GCNGC 5 cut(s) 279, 717, 819, 939, 942
Sau3AI GATC 6 cut(s) 165, 262, 430, 807, 1323, 1375
Sau96I GGNCC 3 cut(s) 44, 374, 1461
SchI GAGTC 3 cut(s) 703, 1108, 1216
ScrFI CCNGG 4 cut(s) 197, 213, 1127, 1128
SduI GDGCHC 1 cut(s) 1135
SfaNI GCATC 3 cut(s) 104, 265, 467
SfuI TTCGAA 1 cut(s) 83
SinI GGWCC 2 cut(s) 374, 1461
SmaI CCCGGG 1 cut(s) 1128
SmlI CTYRAG 2 cut(s) 309, 711
SmoI CTYRAG 2 cut(s) 309, 711
SsiI CCGC 3 cut(s) 141, 486, 938
SspMI CTAG 6 cut(s) 99, 252, 812, 849, 956, 1214
StyD4I CCNGG 4 cut(s) 195, 211, 1125, 1126
StyI CCWWGG 3 cut(s) 341, 387, 1242
TaaI ACNGT 2 cut(s) 931, 1170
TaiI ACGT 3 cut(s) 135, 373, 1138
TaqI TCGA 6 cut(s) 83, 168, 558, 969, 1194, 1326
TatI WGTACW 1 cut(s) 1513
TauI GCSGC 1 cut(s) 941
TfiI GAWTC 5 cut(s) 761, 1010, 1186, 1333, 1508
Tru1I TTAA 3 cut(s) 234, 347, 696
Tru9I TTAA 3 cut(s) 234, 347, 696
TscAI CASTG 4 cut(s) 417, 622, 1187, 1392
TseI GCWGC 4 cut(s) 278, 716, 818, 941
TspDTI ATGAA 9 cut(s) 450, 513, 730, 737, 761, 889, 917, 923, 1100
TspMI CCCGGG 1 cut(s) 1126
TspRI CASTG 4 cut(s) 417, 622, 1187, 1392
Van91I CCANNNNNTGG 1 cut(s) 427
VpaK11BI GGWCC 2 cut(s) 374, 1461
VspI ATTAAT 1 cut(s) 696
XapI RAATTY 4 cut(s) 582, 748, 989, 1354
XbaI TCTAGA 1 cut(s) 98
XceI RCATGY 2 cut(s) 948, 1097
XmaI CCCGGG 1 cut(s) 1126
XmiI GTMKAC 2 cut(s) 1138, 1319
XmnI GAANNNNTTC 3 cut(s) 70, 1106, 1429
XspI CTAG 6 cut(s) 99, 252, 812, 849, 956, 1214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.