MD05G1301900.v1.1

Transcription factor IIIB 50 kDa

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
43441599 .. 43444209
2611 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1301900.v1.1.491

Sequence Viewer

Length: 1653 bp
ATGCCCGTCTGCAGCAATTGCCGCGGCAAAACCTTCGTCCGCGATGACGTCACCGAAAACCTCTCCTGCTCCACCTGCGGCAAGCTCCAAGAGTACGACAACTACGTCCACCAATACGGCGGCGTCTCCGGCCCCACCGGCACCTTCGTCTCCGTCGGCACCACCGGCTCGGGCAACGTTTACAGCTACAAAGAGACGAAAGTTTACGAAGCCCTAAAATTTATCGAATCCATGTCGCTCCGCCTCGGCCTCTCCACCGCCGAGGCCGACGCCGTCAAAGCCATGGCTAGGGAAGTCACGGTAGGTGAGTACGGCCAAGGTAATTGGTTCAATATTTTCGTTGGTGCTTGCGCGTATGTTGCCATGAGAAGGGACAATAAGTCCTTGCCGATCGCCGAGGTCGTTTCGGTGATCGGCGGCACGGATGTTTATGAATTGGGTAGGATGATAATGCGTATAGTTAATTTTTTGGATTTGAAAAAACCCGAGTTTCCGGAATTCGATATTGTCAATTTGTTCGAGCGGACGCTGAGGAATTCGTATAGTTTCGAGGGAATTGAAGGAGATAAGAGGGAGAGAATGAGAAAACAGGGGATATTTCTGCTAAATTGTGCAAAGAAGTGGTTTTTGACAACCGGGCGTAGGCCGCTTCCGATGGTGGCGGCGGTGTTGGCTCTTGTGGCGGAGTTGAATGGTGTTGGGGTTAGGATTGAGGACTTGGCTAAGGAGATTCATGCTGTTGTCCATACTTGTAAATTGCGGTACAGGGAGCTTTTAGAGGCGCTTGTGAAGGTTGCACAGGCCTTGCCTTGGGGGAAGGATGTTACGGTTAAGAATGTAATTAAGAATGCGCCGTTTGTCATTCAGTATATGGAGAGGAAGTTGATGTCGGAGCCGAGTGGGAAAAAGGATTTGGTGGGCGGCATTTGTTTGGATTTGGGAGATGTTAGAGAATATTTGAGGAATGATAGTGGATACGCAAGTGATTTCTGTTTTGAAGATGATTTTGATACAGAAATGGATAAGTTAAAGCTTTCACATGAGTCTCGGTACTTTGAGGTGGAAGATGGTGGGTGCAAATTGGGGGTTGAGGAAATGGATGCGCTGAAGCTTTCACATGAATGCTTATCAATGATTTACTCAAAGTTTTCGGATGAGGTTGACAATGTTAAGTCCTCTAAGGGGTTTGAAGAAGTTCGTGGAACAAAAAAGAGGCGAGGTTTTGCGCTCCATGCTTGTGCTGAGTGGTGGAATGGACAGTCGGAAATGAGCAAGAGGCTTCTGCTTAAGGAGATATTGGAGAAAGATGTAGGATTGGATGCTATACCTCCGTCTTTTGTTAATGGTTGTGTAGCAGTTAAGAGGAGGAAAGAAAAGATAAATGCTGCCAAGCAGCGAATTGATAGAATTATGTGTCCATCAAATGCTCGTTCAGGTGACAGCAGCGACATTTGCATTTCTGAAGAGGTACATACTAGGAAGAAGAGAAAGAGAGGACGAGGCATTGATTGGGAAGATTTAATTATTGAAACCCTCCTCCTTCATAAAGTAAAAGAGGAGGAAATCGAGAAGGGGTGGTACAGTGTACTACTGGAATTATATGTATTTAACTCTGGGGTTGTGATACCACAATCTGAAACGTTATCAAAATAA

Protein Analysis

551

Amino Acids

62.03

Weight (kDa)

6.75

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRF2-like_C_cyclin_rpt PF21886 187 - 282 2.5e-07 BRF2-like, C-terminal cyclin repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014376)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G35540
fragaria_vesca FvH4_6g24910
malus_domestica MD05G1301900.v1.1
prunus_persica Prupe.4G060500_v2.0.a1
pyrus_communis pycom05g27950
rosa_chinensis RchiOBHm_Chr5g0010711
rosa_laevigata RLG00000031773
rosa_multiflora Rmu_sc0007447.1_g000001
rosa_roxburghii Rroxscaffold_1G00065680
rosa_rugosa Rorug04G0451700 Rorug04G0451800
rosa_samantha Rh5AG083500 Rh5BG078700 Rh5CG091500 Rh5DG078900
rosa_wichuraiana Rw0G000630 Rw0G022330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 83
AasI GACNNNNNNGTC 1 cut(s) 104
AatII GACGTC 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 83
AccB1I GGYRCC 2 cut(s) 140, 158
AccBSI CCGCTC 1 cut(s) 523
AccII CGCG 3 cut(s) 24, 42, 353
AccIII TCCGGA 1 cut(s) 493
AclI AACGTT 2 cut(s) 177, 1640
AcoI YGGCCR 1 cut(s) 313
AcsI RAATTY 3 cut(s) 218, 497, 535
AcuI CTGAAG 2 cut(s) 1127, 1482
AcyI GRCGYC 3 cut(s) 48, 123, 270
AfaI GTAC 7 cut(s) 95, 311, 764, 1052, 1470, 1580, 1587
AfiI CCNNNNNNNGG 5 cut(s) 288, 369, 642, 810, 1182
AflII CTTAAG 1 cut(s) 1286
AgsI TTSAA 7 cut(s) 331, 478, 560, 691, 998, 1190, 1529
AhdI GACNNNNNGTC 1 cut(s) 379
AjuI GAANNNNNNNTTGG 2 cut(s) 896, 928
AluBI AGCT 5 cut(s) 85, 186, 772, 1033, 1111
AluI AGCT 5 cut(s) 85, 186, 772, 1033, 1111
Alw26I GTCTC 4 cut(s) 130, 154, 188, 1050
Ama87I CYCGRG 2 cut(s) 169, 485
Aor13HI TCCGGA 1 cut(s) 493
AoxI GGCC 6 cut(s) 130, 247, 264, 313, 644, 801
ApeKI GCWGC 4 cut(s) 12, 1385, 1393, 1443
ApoI RAATTY 3 cut(s) 218, 497, 535
ArsI GACNNNNNNTTYG 2 cut(s) 21, 53
Asp700I GAANNNNTTC 1 cut(s) 1194
AspLEI GCGC 5 cut(s) 353, 784, 853, 1105, 1228
AspS9I GGNCC 1 cut(s) 131
AsuC2I CCSGG 1 cut(s) 637
AsuHPI GGTGA 4 cut(s) 43, 317, 421, 1448
AvaI CYCGRG 2 cut(s) 169, 485
BaeI ACNNNNGTAYC 2 cut(s) 967, 1000
BanI GGYRCC 2 cut(s) 140, 158
BarI GAAGNNNNNNTAC 2 cut(s) 1562, 1594
BbvCI CCTCAGC 1 cut(s) 530
BbvI GCAGC 4 cut(s) 24, 1372, 1405, 1455
BccI CCATC 3 cut(s) 649, 1061, 1426
BceAI ACGGC 4 cut(s) 133, 257, 328, 838
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BciVI GTATCC 1 cut(s) 968
BcnI CCSGG 1 cut(s) 637
BcoDI GTCTC 4 cut(s) 130, 154, 188, 1050
BfaI CTAG 2 cut(s) 288, 1476
BfmI CTRYAG 1 cut(s) 10
BfoI RGCGCY 1 cut(s) 785
BfrI CTTAAG 1 cut(s) 1286
BfuAI ACCTGC 1 cut(s) 83
BfuI GTATCC 1 cut(s) 968
BglI GCCNNNNNGGC 1 cut(s) 138
Bme1390I CCNGG 1 cut(s) 637
BmeRI GACNNNNNGTC 1 cut(s) 379
BmeT110I CYCGRG 2 cut(s) 169, 485
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 4 cut(s) 133, 142, 160, 894
BmrFI CCNGG 1 cut(s) 637
BmsI GCATC 2 cut(s) 1090, 1309
Bpu10I CCTNAGC 2 cut(s) 530, 723
BpuMI CCSGG 1 cut(s) 637
BsaHI GRCGYC 3 cut(s) 48, 123, 270
BsaJI CCNNGG 7 cut(s) 22, 244, 261, 282, 316, 396, 809
BsaWI WCCGGW 1 cut(s) 493
BsaXI ACNNNNNCTCC 2 cut(s) 866, 896
Bsc4I CCNNNNNNNGG 5 cut(s) 288, 369, 642, 810, 1182
Bse118I RCCGGY 2 cut(s) 137, 164
Bse1I ACTGG 1 cut(s) 1596
BseAI TCCGGA 1 cut(s) 493
BseDI CCNNGG 7 cut(s) 22, 244, 261, 282, 316, 396, 809
BseGI GGATG 6 cut(s) 430, 450, 826, 1105, 1159, 1324
BseLI CCNNNNNNNGG 5 cut(s) 288, 369, 642, 810, 1182
BseMII CTCAG 2 cut(s) 521, 1233
BseNI ACTGG 1 cut(s) 1596
BseRI GAGGAG 3 cut(s) 1378, 1526, 1571
BseXI GCAGC 4 cut(s) 24, 1372, 1405, 1455
Bsh1236I CGCG 3 cut(s) 24, 42, 353
Bsh1285I CGRYCG 1 cut(s) 393
BshFI GGCC 6 cut(s) 132, 249, 266, 315, 646, 803
BshNI GGYRCC 2 cut(s) 140, 158
BsiEI CGRYCG 1 cut(s) 393
BsiHKCI CYCGRG 2 cut(s) 169, 485
BsiSI CCGG 5 cut(s) 129, 138, 165, 494, 636
BslFI GGGAC 1 cut(s) 386
BslI CCNNNNNNNGG 5 cut(s) 288, 369, 642, 810, 1182
BsmAI GTCTC 4 cut(s) 130, 154, 188, 1050
BsmBI CGTCTC 3 cut(s) 130, 154, 188
BsmFI GGGAC 1 cut(s) 386
BsmI GAATGC 2 cut(s) 853, 1127
BsnI GGCC 6 cut(s) 132, 249, 266, 315, 646, 803
BsoBI CYCGRG 2 cut(s) 169, 485
Bsp13I TCCGGA 1 cut(s) 493
Bsp143I GATC 2 cut(s) 390, 411
Bsp19I CCATGG 1 cut(s) 282
BspANI GGCC 6 cut(s) 132, 249, 266, 315, 646, 803
BspCNI CTCAG 2 cut(s) 522, 1234
BspEI TCCGGA 1 cut(s) 493
BspFNI CGCG 3 cut(s) 24, 42, 353
BspLI GGNNCC 4 cut(s) 133, 142, 160, 894
BspMAI CTGCAG 1 cut(s) 14
BspMI ACCTGC 1 cut(s) 83
BspT107I GGYRCC 2 cut(s) 140, 158
BspTI CTTAAG 1 cut(s) 1286
BsrBI CCGCTC 1 cut(s) 523
BsrFI RCCGGY 2 cut(s) 137, 164
BsrI ACTGG 1 cut(s) 1596
BssAI RCCGGY 2 cut(s) 137, 164
BssECI CCNNGG 7 cut(s) 22, 244, 261, 282, 316, 396, 809
BssMI GATC 2 cut(s) 390, 411
BssNI GRCGYC 3 cut(s) 48, 123, 270
BssT1I CCWWGG 3 cut(s) 282, 316, 809
Bst4CI ACNGT 4 cut(s) 301, 829, 1260, 1583
Bst6I CTCTTC 2 cut(s) 1458, 1478
BstACI GRCGYC 3 cut(s) 48, 123, 270
BstAFI CTTAAG 1 cut(s) 1286
BstAPI GCANNNNNTGC 1 cut(s) 18
BstC8I GCNNGC 2 cut(s) 83, 349
BstDEI CTNAG 4 cut(s) 530, 723, 1179, 1242
BstDSI CCRYGG 2 cut(s) 22, 282
BstF5I GGATG 6 cut(s) 430, 450, 826, 1105, 1159, 1324
BstFNI CGCG 3 cut(s) 24, 42, 353
BstH2I RGCGCY 1 cut(s) 785
BstHHI GCGC 5 cut(s) 353, 784, 853, 1105, 1228
BstKTI GATC 2 cut(s) 393, 414
BstMAI GTCTC 4 cut(s) 130, 154, 188, 1050
BstMBI GATC 2 cut(s) 390, 411
BstMCI CGRYCG 1 cut(s) 393
BstSCI CCNGG 1 cut(s) 635
BstSFI CTRYAG 1 cut(s) 10
BstUI CGCG 3 cut(s) 24, 42, 353
BstV1I GCAGC 4 cut(s) 24, 1372, 1405, 1455
BsuI GTATCC 1 cut(s) 968
BsuRI GGCC 6 cut(s) 132, 249, 266, 315, 646, 803
BtgI CCRYGG 2 cut(s) 22, 282
BtgZI GCGATG 1 cut(s) 57
BtsCI GGATG 6 cut(s) 430, 450, 826, 1105, 1159, 1324
BtsIMutI CAGTG 1 cut(s) 1588
BveI ACCTGC 1 cut(s) 83
Cac8I GCNNGC 2 cut(s) 83, 349
CfoI GCGC 5 cut(s) 353, 784, 853, 1105, 1228
Cfr10I RCCGGY 2 cut(s) 137, 164
Cfr13I GGNCC 1 cut(s) 131
Cfr42I CCGCGG 1 cut(s) 25
CseI GACGC 3 cut(s) 112, 278, 535
Csp6I GTAC 7 cut(s) 94, 310, 763, 1051, 1469, 1579, 1586
CviAII CATG 7 cut(s) 232, 283, 364, 734, 1040, 1118, 1232
CviQI GTAC 7 cut(s) 94, 310, 763, 1051, 1469, 1579, 1586
DdeI CTNAG 4 cut(s) 530, 723, 1179, 1242
DpnI GATC 2 cut(s) 392, 413
DpnII GATC 2 cut(s) 390, 411
DrdI GACNNNNNNGTC 1 cut(s) 104
DriI GACNNNNNGTC 1 cut(s) 379
DseDI GACNNNNNNGTC 1 cut(s) 104
EaeI YGGCCR 1 cut(s) 313
Eam1104I CTCTTC 2 cut(s) 1458, 1478
Eam1105I GACNNNNNGTC 1 cut(s) 379
EarI CTCTTC 2 cut(s) 1458, 1478
EciI GGCGGA 2 cut(s) 230, 698
Eco130I CCWWGG 3 cut(s) 282, 316, 809
Eco147I AGGCCT 1 cut(s) 803
Eco57I CTGAAG 2 cut(s) 1127, 1482
Eco88I CYCGRG 2 cut(s) 169, 485
EcoRI GAATTC 2 cut(s) 497, 535
EcoT14I CCWWGG 3 cut(s) 282, 316, 809
ErhI CCWWGG 3 cut(s) 282, 316, 809
Esp3I CGTCTC 3 cut(s) 130, 154, 188
FaeI CATG 7 cut(s) 235, 286, 367, 737, 1043, 1121, 1235
FaqI GGGAC 1 cut(s) 386
FatI CATG 7 cut(s) 231, 282, 363, 733, 1039, 1117, 1231
FokI GGATG 6 cut(s) 437, 457, 833, 1112, 1166, 1331
FspBI CTAG 2 cut(s) 288, 1476
GlaI GCGC 5 cut(s) 352, 783, 852, 1104, 1227
HaeII RGCGCY 1 cut(s) 785
HaeIII GGCC 6 cut(s) 132, 249, 266, 315, 646, 803
HapII CCGG 5 cut(s) 129, 138, 165, 494, 636
HgaI GACGC 3 cut(s) 112, 278, 535
HhaI GCGC 5 cut(s) 353, 784, 853, 1105, 1228
Hin1I GRCGYC 3 cut(s) 48, 123, 270
Hin1II CATG 7 cut(s) 235, 286, 367, 737, 1043, 1121, 1235
Hin6I GCGC 5 cut(s) 351, 782, 851, 1103, 1226
HinP1I GCGC 5 cut(s) 351, 782, 851, 1103, 1226
HincII GTYRAC 1 cut(s) 1162
HindII GTYRAC 1 cut(s) 1162
HindIII AAGCTT 2 cut(s) 1031, 1109
HinfI GANTC 3 cut(s) 227, 730, 1043
HpaII CCGG 5 cut(s) 129, 138, 165, 494, 636
HphI GGTGA 4 cut(s) 43, 317, 421, 1448
Hpy166II GTNNAC 5 cut(s) 109, 181, 205, 1162, 1586
Hpy188I TCNGA 6 cut(s) 654, 892, 1153, 1264, 1462, 1636
Hpy188III TCNNGA 2 cut(s) 494, 1567
Hpy8I GTNNAC 5 cut(s) 109, 181, 205, 1162, 1586
Hpy99I CGWCG 2 cut(s) 158, 272
HpyAV CCTTC 8 cut(s) 43, 154, 363, 554, 784, 811, 1550, 1564
HpyCH4III ACNGT 4 cut(s) 301, 829, 1260, 1583
HpyCH4IV ACGT 4 cut(s) 48, 105, 177, 1640
HpyCH4V TGCA 5 cut(s) 12, 614, 797, 1077, 1455
HpyF3I CTNAG 4 cut(s) 530, 723, 1179, 1242
HpySE526I ACGT 4 cut(s) 48, 105, 177, 1640
Hsp92I GRCGYC 3 cut(s) 48, 123, 270
Hsp92II CATG 7 cut(s) 235, 286, 367, 737, 1043, 1121, 1235
HspAI GCGC 5 cut(s) 351, 782, 851, 1103, 1226
Kpn2I TCCGGA 1 cut(s) 493
KspI CCGCGG 1 cut(s) 25
Kzo9I GATC 2 cut(s) 390, 411
LmnI GCTCC 6 cut(s) 74, 90, 243, 769, 892, 1233
Lsp1109I GCAGC 4 cut(s) 24, 1372, 1405, 1455
LweI GCATC 2 cut(s) 1090, 1309
MaeI CTAG 2 cut(s) 288, 1476
MaeII ACGT 4 cut(s) 48, 105, 177, 1640
MaeIII GTNAC 4 cut(s) 49, 295, 823, 1436
MalI GATC 2 cut(s) 392, 413
MbiI CCGCTC 1 cut(s) 523
MboI GATC 2 cut(s) 390, 411
MboII GAAGA 7 cut(s) 1010, 1076, 1202, 1475, 1492, 1495, 1526
MfeI CAATTG 1 cut(s) 16
MlyI GAGTC 1 cut(s) 1052
MmeI TCCRAC 2 cut(s) 870, 1242
MroI TCCGGA 1 cut(s) 493
MroXI GAANNNNTTC 1 cut(s) 1194
MslI CAYNNNNRTG 2 cut(s) 1120, 1236
MspA1I CMGCKG 1 cut(s) 24
MspCI CTTAAG 1 cut(s) 1286
MspI CCGG 5 cut(s) 129, 138, 165, 494, 636
MspR9I CCNGG 1 cut(s) 637
MunI CAATTG 1 cut(s) 16
Mva1269I GAATGC 2 cut(s) 853, 1127
MvnI CGCG 3 cut(s) 24, 42, 353
NciI CCSGG 1 cut(s) 637
NcoI CCATGG 1 cut(s) 282
NdeII GATC 2 cut(s) 390, 411
NlaIII CATG 7 cut(s) 235, 286, 367, 737, 1043, 1121, 1235
NlaIV GGNNCC 4 cut(s) 133, 142, 160, 894
NmeAIII GCCGAG 4 cut(s) 225, 286, 421, 921
NmuCI GTSAC 3 cut(s) 49, 295, 1436
PaqCI CACCTGC 1 cut(s) 83
PceI AGGCCT 1 cut(s) 803
PcsI WCGNNNNNNNCGW 2 cut(s) 102, 399
PctI GAATGC 2 cut(s) 853, 1127
PdmI GAANNNNTTC 1 cut(s) 1194
PfeI GAWTC 2 cut(s) 227, 730
PflFI GACNNNGTC 1 cut(s) 272
Ple19I CGATCG 1 cut(s) 393
PleI GAGTC 1 cut(s) 1051
PpsI GAGTC 1 cut(s) 1051
Psp1406I AACGTT 2 cut(s) 177, 1640
PspN4I GGNNCC 4 cut(s) 133, 142, 160, 894
PspPI GGNCC 1 cut(s) 131
PstI CTGCAG 1 cut(s) 14
PsyI GACNNNGTC 1 cut(s) 272
PvuI CGATCG 1 cut(s) 393
RsaI GTAC 7 cut(s) 95, 311, 764, 1052, 1470, 1580, 1587
RsaNI GTAC 7 cut(s) 94, 310, 763, 1051, 1469, 1579, 1586
RseI CAYNNNNRTG 2 cut(s) 1120, 1236
SacII CCGCGG 1 cut(s) 25
Sau3AI GATC 2 cut(s) 390, 411
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 1 cut(s) 1052
ScrFI CCNGG 1 cut(s) 637
SfaNI GCATC 2 cut(s) 1090, 1309
SfcI CTRYAG 1 cut(s) 10
Sfr303I CCGCGG 1 cut(s) 25
SgrBI CCGCGG 1 cut(s) 25
SmiMI CAYNNNNRTG 2 cut(s) 1120, 1236
SmlI CTYRAG 1 cut(s) 1286
SmoI CTYRAG 1 cut(s) 1286
SseBI AGGCCT 1 cut(s) 803
SspI AATATT 2 cut(s) 334, 956
SspMI CTAG 2 cut(s) 288, 1476
StuI AGGCCT 1 cut(s) 803
StyD4I CCNGG 1 cut(s) 635
StyI CCWWGG 3 cut(s) 282, 316, 809
TaaI ACNGT 4 cut(s) 301, 829, 1260, 1583
TaiI ACGT 4 cut(s) 51, 108, 180, 1643
TaqI TCGA 5 cut(s) 225, 501, 519, 549, 1566
TatI WGTACW 1 cut(s) 1585
TauI GCSGC 8 cut(s) 24, 27, 81, 123, 420, 649, 665, 924
TfiI GAWTC 2 cut(s) 227, 730
TscAI CASTG 1 cut(s) 1588
TseFI GTSAC 3 cut(s) 49, 295, 1436
TseI GCWGC 4 cut(s) 12, 1385, 1393, 1443
Tsp45I GTSAC 3 cut(s) 49, 295, 1436
TspDTI ATGAA 4 cut(s) 447, 722, 1134, 1532
TspGWI ACGGA 3 cut(s) 142, 437, 1320
TspRI CASTG 1 cut(s) 1588
Tth111I GACNNNGTC 1 cut(s) 272
Vha464I CTTAAG 1 cut(s) 1286
XapI RAATTY 3 cut(s) 218, 497, 535
XmnI GAANNNNTTC 1 cut(s) 1194
XspI CTAG 2 cut(s) 288, 1476
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.