Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0014376

Physical Location & Seq

Genomic Coordinates Reverse (-)

28800594 .. 28801775

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g27950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGATAATGCGTGTAGTTAATTTTTTGGATTTGAAAAAACCTGAGTTTCCGGAATTCGATATTGTCAATTTGTTCGAGCGGATGCTTAGGAATTTTTGTAGTTTCGAGGGAATTGAAGGAGATAAGAGGGAGAGAATGAGAAAACAGGGGATATTTCTGCTAAATTGTGCAAAGAAGTGGTTTTTGACAACCGGGCGTAGGCCGCTTCCGATGGTGGCGGCAGTGTTGGCTCTTGTGGCGGAGTTGAATGGCGTTGGGGTTAGGATTGAGGATTTGGCTAAGGAAATTCATGCTGTTGTCCACACTTGTAAATTGCGATATAGGGAGCTTTTAGAGGCGCTTGTGAAGGTTGCGCAGGCCTTGCCTTGGGGGAAGGATATTACAGTTAAGAATGTGATTAAGAATGCACCGTTTGTCATTCAGTATATGGAGAGGAAGTCGATGTCAGAGCCGAGTGGGAAAAAGGATTTGGTGGGCGGCATTTGTTTTGATTTGGGAAATGTTAGAGAATATTTGAGGAATGATAGTGGATACGCAAGTGACTTCTGTTTTGAAGACGATTTTGATACAGAAATGGATAATTTAAAGCTTTCACATGAGTCTCGGTACTTTGAGGTGGAAGATGGTGGGTGCAAATTGGGTGTTGAGGATATGGATTCGTTGAAGCTTTCACATGAATGCTTATCAATGATTTACTCAAAGTTTTCAGATGAGGTTGACAATGTTAAGTCCTCTAAGGGATTTGAAGAAGTTCGTGGAACAAAAAAGAGGCAAGGTTTTGCGCTCCATGCTTGTGCTGAGTGGTGGAATGGACAGTCGGAAATGAGCAAGAGGCTTCTGCTTAAGGAGATATTGGAGAAAGATGTAGGATTGGATGCTATACCTCCGTCTTTTGTTAATGGTTGTGTAGCTGTTAAGAGGAGGAAAGAAAAGATAAATGCTGCCAAGCAGCGAATTGATAGAATTATGTGTCCATCAAATGCTCGTTCAGGTGACAGCAGCGACATTTGCATTTCTGAAGAGGTACATACTAGGAAGAAGAGAAAGAGAGGACGTGGCATTGATTGGGAAGATTTAATTATTGAAACCCTCCTCCTTCATAAAGTAAAAGAGGAGGAAATCGAGAAGGGGTGGTACAATGTATTACTGGAATTATATGTATTTAACTCTGGGGTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000126 GO:0001016 GO:0001032 GO:0001067 GO:0001085 GO:0001091 GO:0001093 GO:0001098 GO:0001099 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006359 GO:0006950 GO:0006979 GO:0007275 GO:0008134 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009846 GO:0009856 GO:0009889 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019899 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034599 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044706 GO:0044798 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070063 GO:0070887 GO:0080090 GO:0090576 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TF_Zn_Ribbon

Protein Analysis

394

Amino Acids

45.08

Weight (kDa)

7.04

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRF2-like_C_cyclin_rpt	PF21886	41 - 134	2.1e-07	BRF2-like, C-terminal cyclin repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35540
fragaria_vesca	FvH4_6g24910
malus_domestica	MD05G1301900.v1.1
prunus_persica	Prupe.4G060500_v2.0.a1
pyrus_communis	pycom05g27950
rosa_chinensis	RchiOBHm_Chr5g0010711
rosa_laevigata	RLG00000031773
rosa_multiflora	Rmu_sc0007447.1_g000001
rosa_roxburghii	Rroxscaffold_1G00065680
rosa_rugosa	Rorug04G0451700 Rorug04G0451800
rosa_samantha	Rh5AG083500 Rh5BG078700 Rh5CG091500 Rh5DG078900
rosa_wichuraiana	Rw0G000630 Rw0G022330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	354
AccBSI	CCGCTC	1 cut(s)	79
AccIII	TCCGGA	1 cut(s)	49
AciI	CCGC	5 cut(s)	79, 203, 218, 239, 477
AcsI	RAATTY	3 cut(s)	53, 91, 285
AcuI	CTGAAG	1 cut(s)	1038
AfaI	GTAC	3 cut(s)	608, 1026, 1136
AfiI	CCNNNNNNNGG	2 cut(s)	198, 366
AflII	CTTAAG	1 cut(s)	842
AgsI	TTSAA	7 cut(s)	34, 116, 247, 554, 664, 746, 1085
AjiI	CACGTC	1 cut(s)	1055
AjuI	GAANNNNNNNTTGG	2 cut(s)	452, 484
AluBI	AGCT	4 cut(s)	328, 589, 667, 911
AluI	AGCT	4 cut(s)	328, 589, 667, 911
Alw26I	GTCTC	1 cut(s)	606
Aor13HI	TCCGGA	1 cut(s)	49
AoxI	GGCC	2 cut(s)	200, 357
ApeKI	GCWGC	3 cut(s)	941, 949, 999
ApoI	RAATTY	3 cut(s)	53, 91, 285
ArsI	GACNNNNNNTTYG	2 cut(s)	533, 565
Asp700I	GAANNNNTTC	1 cut(s)	750
AspLEI	GCGC	3 cut(s)	340, 355, 784
AsuC2I	CCSGG	1 cut(s)	193
AsuHPI	GGTGA	1 cut(s)	1004
BaeI	ACNNNNGTAYC	2 cut(s)	523, 556
BarI	GAAGNNNNNNTAC	2 cut(s)	1118, 1150
BbsI	GAAGAC	1 cut(s)	561
BbvI	GCAGC	3 cut(s)	928, 961, 1011
BccI	CCATC	3 cut(s)	205, 617, 982
BciVI	GTATCC	1 cut(s)	524
BcnI	CCSGG	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	606
BfaI	CTAG	1 cut(s)	1032
BfoI	RGCGCY	1 cut(s)	341
BfrI	CTTAAG	1 cut(s)	842
BfuI	GTATCC	1 cut(s)	524
BisI	GCNGC	6 cut(s)	203, 219, 478, 942, 950, 1000
BlsI	GCNGC	6 cut(s)	204, 220, 479, 943, 951, 1001
Bme1390I	CCNGG	1 cut(s)	193
BmgBI	CACGTC	1 cut(s)	1055
BmrFI	CCNGG	1 cut(s)	193
BmsI	GCATC	2 cut(s)	72, 865
BpiI	GAAGAC	1 cut(s)	561
Bpu10I	CCTNAGC	2 cut(s)	86, 279
BpuMI	CCSGG	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	365
BsaWI	WCCGGW	1 cut(s)	49
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 366
Bse1I	ACTGG	1 cut(s)	1152
BseAI	TCCGGA	1 cut(s)	49
BseDI	CCNNGG	1 cut(s)	365
BseGI	GGATG	2 cut(s)	87, 880
BseLI	CCNNNNNNNGG	2 cut(s)	198, 366
BseMII	CTCAG	2 cut(s)	33, 789
BseNI	ACTGG	1 cut(s)	1152
BseRI	GAGGAG	3 cut(s)	934, 1082, 1127
BseXI	GCAGC	3 cut(s)	928, 961, 1011
BshFI	GGCC	2 cut(s)	202, 359
BsiSI	CCGG	2 cut(s)	50, 192
BslI	CCNNNNNNNGG	2 cut(s)	198, 366
BsmAI	GTCTC	1 cut(s)	606
BsmI	GAATGC	2 cut(s)	409, 683
BsnI	GGCC	2 cut(s)	202, 359
Bsp13I	TCCGGA	1 cut(s)	49
BspACI	CCGC	5 cut(s)	79, 203, 218, 239, 477
BspANI	GGCC	2 cut(s)	202, 359
BspCNI	CTCAG	2 cut(s)	34, 790
BspEI	TCCGGA	1 cut(s)	49
BspTI	CTTAAG	1 cut(s)	842
BsrBI	CCGCTC	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	1152
BssECI	CCNNGG	1 cut(s)	365
BssT1I	CCWWGG	1 cut(s)	365
Bst4CI	ACNGT	3 cut(s)	385, 411, 816
Bst6I	CTCTTC	2 cut(s)	1014, 1034
BstAFI	CTTAAG	1 cut(s)	842
BstAPI	GCANNNNNTGC	1 cut(s)	361
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	5 cut(s)	42, 86, 279, 735, 798
BstF5I	GGATG	2 cut(s)	87, 880
BstH2I	RGCGCY	1 cut(s)	341
BstHHI	GCGC	3 cut(s)	340, 355, 784
BstMAI	GTCTC	1 cut(s)	606
BstMWI	GCNNNNNNNGC	6 cut(s)	202, 227, 236, 361, 788, 1008
BstSCI	CCNGG	1 cut(s)	191
BstV1I	GCAGC	3 cut(s)	928, 961, 1011
BstV2I	GAAGAC	1 cut(s)	561
BsuI	GTATCC	1 cut(s)	524
BsuRI	GGCC	2 cut(s)	202, 359
BtrI	CACGTC	1 cut(s)	1055
BtsCI	GGATG	2 cut(s)	87, 880
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	357
CfoI	GCGC	3 cut(s)	340, 355, 784
Csp6I	GTAC	3 cut(s)	607, 1025, 1135
CviAII	CATG	4 cut(s)	290, 596, 674, 788
CviQI	GTAC	3 cut(s)	607, 1025, 1135
DdeI	CTNAG	5 cut(s)	42, 86, 279, 735, 798
DraI	TTTAAA	1 cut(s)	585
Eam1104I	CTCTTC	2 cut(s)	1014, 1034
EarI	CTCTTC	2 cut(s)	1014, 1034
EciI	GGCGGA	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	365
Eco147I	AGGCCT	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	1038
EcoRI	GAATTC	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	365
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	4 cut(s)	293, 599, 677, 791
FatI	CATG	4 cut(s)	289, 595, 673, 787
Fnu4HI	GCNGC	6 cut(s)	203, 219, 478, 942, 950, 1000
FokI	GGATG	2 cut(s)	94, 887
Fsp4HI	GCNGC	6 cut(s)	203, 219, 478, 942, 950, 1000
FspBI	CTAG	1 cut(s)	1032
FspI	TGCGCA	1 cut(s)	354
GlaI	GCGC	3 cut(s)	339, 354, 783
GluI	GCNGC	6 cut(s)	203, 219, 478, 942, 950, 1000
HaeII	RGCGCY	1 cut(s)	341
HaeIII	GGCC	2 cut(s)	202, 359
HapII	CCGG	2 cut(s)	50, 192
HhaI	GCGC	3 cut(s)	340, 355, 784
Hin1II	CATG	4 cut(s)	293, 599, 677, 791
Hin6I	GCGC	3 cut(s)	338, 353, 782
HinP1I	GCGC	3 cut(s)	338, 353, 782
HincII	GTYRAC	1 cut(s)	718
HindII	GTYRAC	1 cut(s)	718
HindIII	AAGCTT	2 cut(s)	587, 665
HinfI	GANTC	2 cut(s)	599, 656
HpaII	CCGG	2 cut(s)	50, 192
HphI	GGTGA	1 cut(s)	1004
Hpy166II	GTNNAC	2 cut(s)	301, 718
Hpy188I	TCNGA	5 cut(s)	210, 448, 709, 820, 1018
Hpy188III	TCNNGA	2 cut(s)	50, 1123
Hpy8I	GTNNAC	2 cut(s)	301, 718
HpyAV	CCTTC	5 cut(s)	110, 340, 367, 1106, 1120
HpyCH4III	ACNGT	3 cut(s)	385, 411, 816
HpyCH4IV	ACGT	1 cut(s)	1054
HpyCH4V	TGCA	4 cut(s)	170, 407, 633, 1011
HpyF10VI	GCNNNNNNNGC	6 cut(s)	202, 227, 236, 361, 788, 1008
HpyF3I	CTNAG	5 cut(s)	42, 86, 279, 735, 798
HpySE526I	ACGT	1 cut(s)	1054
Hsp92II	CATG	4 cut(s)	293, 599, 677, 791
HspAI	GCGC	3 cut(s)	338, 353, 782
Kpn2I	TCCGGA	1 cut(s)	49
LmnI	GCTCC	2 cut(s)	325, 789
LpnPI	CCDG	8 cut(s)	54, 63, 131, 205, 341, 975, 1133, 1155
Lsp1109I	GCAGC	3 cut(s)	928, 961, 1011
LweI	GCATC	2 cut(s)	72, 865
MaeI	CTAG	1 cut(s)	1032
MaeII	ACGT	1 cut(s)	1054
MaeIII	GTNAC	2 cut(s)	539, 992
MbiI	CCGCTC	1 cut(s)	79
MboII	GAAGA	7 cut(s)	566, 632, 758, 1031, 1048, 1051, 1082
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	1 cut(s)	798
MroI	TCCGGA	1 cut(s)	49
MroXI	GAANNNNTTC	1 cut(s)	750
MslI	CAYNNNNRTG	2 cut(s)	676, 792
MspCI	CTTAAG	1 cut(s)	842
MspI	CCGG	2 cut(s)	50, 192
MspR9I	CCNGG	1 cut(s)	193
Mva1269I	GAATGC	2 cut(s)	409, 683
MwoI	GCNNNNNNNGC	6 cut(s)	202, 227, 236, 361, 788, 1008
NciI	CCSGG	1 cut(s)	193
NlaIII	CATG	4 cut(s)	293, 599, 677, 791
NmeAIII	GCCGAG	1 cut(s)	477
NmuCI	GTSAC	2 cut(s)	539, 992
NsbI	TGCGCA	1 cut(s)	354
PceI	AGGCCT	1 cut(s)	359
PctI	GAATGC	2 cut(s)	409, 683
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	1 cut(s)	656
PkrI	GCNGC	6 cut(s)	204, 220, 479, 943, 951, 1001
PleI	GAGTC	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	607
RsaI	GTAC	3 cut(s)	608, 1026, 1136
RsaNI	GTAC	3 cut(s)	607, 1025, 1135
RseI	CAYNNNNRTG	2 cut(s)	676, 792
SatI	GCNGC	6 cut(s)	203, 219, 478, 942, 950, 1000
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	1 cut(s)	193
SfaNI	GCATC	2 cut(s)	72, 865
SmiMI	CAYNNNNRTG	2 cut(s)	676, 792
SmlI	CTYRAG	1 cut(s)	842
SmoI	CTYRAG	1 cut(s)	842
SseBI	AGGCCT	1 cut(s)	359
SsiI	CCGC	5 cut(s)	79, 203, 218, 239, 477
SspI	AATATT	1 cut(s)	512
SspMI	CTAG	1 cut(s)	1032
StuI	AGGCCT	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	3 cut(s)	385, 411, 816
TaiI	ACGT	1 cut(s)	1057
TaqI	TCGA	5 cut(s)	57, 75, 105, 440, 1122
TauI	GCSGC	3 cut(s)	205, 221, 480
TfiI	GAWTC	1 cut(s)	656
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	2 cut(s)	539, 992
TseI	GCWGC	3 cut(s)	941, 949, 999
Tsp45I	GTSAC	2 cut(s)	539, 992
TspDTI	ATGAA	3 cut(s)	278, 690, 1088
TspGWI	ACGGA	1 cut(s)	876
TspRI	CASTG	1 cut(s)	228
Vha464I	CTTAAG	1 cut(s)	842
XapI	RAATTY	3 cut(s)	53, 91, 285
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	1 cut(s)	1032

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.