Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000611

Physical Location & Seq

Genomic Coordinates Reverse (-)

60636442 .. 60638386

Gene Structure 1945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0451700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTTAGTAGACTCAAACCCGCCTCTCCTACACCATTATGGAGCCCTTTTGCACCAGCCATCCGATAAAAATCCTCAACTACATGAAAACCATATCACAGAAGAATGCCAGCTCCCATTGATAGACCTTGAAGGGTTGAAGAGCCATGACGTGAGTTACAGGCTAGCATGCGCTAGCGCGATTTGTAGAGCCTCCTCAGAATGGGGCTTTTTCCAAGTGGTGAACCATGGCATAAGCTCTGAGCTTATAAAGAAGATGAGGAGAGAGCAAGTGAAGTTGTTTTCAGCACCCTTTAAGAAGAAACAAACTTCTGGGCTTCTCAACAATTCTTATAGGTATGGGACTCCAACAGCAACTCACCCAACTCAGTTCTCTTGGTCTGAAGCTTTTCACATTCCTGTCTCAAAAATCTCAGACCAAACTTGCTATGGGGAGTTCACCTCTCTAAGGGAAGTGATGGAGGAATTTTCAACAGCCATGTCCAACCTATCAAAAGTGCTTGCTCGGGTTCTAATTAATAATCTCGACAAACAAGAGGAAGCTGCAGGAGACATTTGTGAGTCGAGCTCATGCTTTCTTCGCTTGAATCGCTACCCGGCTTGTCCATTTTCCCCAGAGATGTTTGGTCTAGTGCCTCACACTGACAGTGATTTCCTCACCATTCTTTGCCAAGATCAAGTAGGAGGACTTCAACTCATGAAAGACTCCAAATGGGTTGCTGTAAAACCCAATCCGGACGCGCTTATCGTCAACATTGGAGATCTTTTTCAGGCATGGAGCAACGATGTGTATAAGAGTGTGGAACACAAGGTCATGGCCAACGAGAAAACGGAACGATATTCGATAGCATACTTTCTGTGCCCATCTTATGATTCTTTAATAGGGAGTTGCAGAGAATCCTCCATTTATAGAAAGTTCACATTTGGAGAATACAGGAGCCAAATTCAAGAAGATGTCAAGAAACTCGGCCATAAAGTCGGTCTCTCCAGATTTCTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000126 GO:0001016 GO:0001032 GO:0001067 GO:0001085 GO:0001091 GO:0001093 GO:0001098 GO:0001099 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006355 GO:0006359 GO:0006950 GO:0006979 GO:0007275 GO:0008134 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009846 GO:0009856 GO:0009889 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019899 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034599 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044706 GO:0044798 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070063 GO:0070887 GO:0080090 GO:0090576 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TF_Zn_Ribbon

Protein Analysis

333

Amino Acids

37.75

Weight (kDa)

6.46

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	38 - 139	5.3e-18	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	191 - 288	1.8e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15010 AT3G15010
fragaria_vesca	FvH4_3g07890 FvH4_3g18630 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550
malus_domestica	MD03G1240500.v1.1 MD10G1280800.v1.1 MD11G1259900.v1.1 MD12G1058300.v1.1
prunus_persica	Prupe.4G060300_v2.0.a1 Prupe.4G170100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1
pyrus_communis	pycom12g05260
rosa_chinensis	RchiOBHm_Chr1g0364191 RchiOBHm_Chr3g0480051 RchiOBHm_Chr5g0010701 RchiOBHm_Chr5g0031451
rosa_laevigata	RLG00000023519 RLG00000031772 RLG00000033308
rosa_multiflora	Rmu_co8296297.1_g000001 Rmu_sc0003684.1_g000004 Rmu_sc0006604.1_g000017 Rmu_sc0008864.1_g000013 Rmu_sc0013975.1_g000001 Rmu_sc0021762.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005170 Rroxscaffold_1G00065690 Rroxscaffold_6G00401800
rosa_rugosa	Rorug03G0180200 Rorug03G0180300 Rorug03G0180400 Rorug03G0180500 Rorug04G0451600 Rorug04G0451700 Rorug05G0125900
rosa_samantha	Rh1AG051900 Rh1AG321800 Rh1CG005400 Rh1CG301300 Rh1DG000800 Rh3AG231300 Rh3BG263700 Rh3CG261200 Rh3DG257100 Rh3DG316100 Rh4AG036900 Rh4AG037000 Rh4BG212900 Rh4BG213000 Rh4CG196500 Rh4DG300800 Rh4DG300900 Rh4DG301000 Rh5AG083400 Rh5AG218600 Rh5BG078600 Rh5BG218000 Rh5CG091400 Rh5CG241600 Rh5DG078800 Rh5DG223200 Rh7BG406600 Rh7DG422300
rosa_wichuraiana	Rw0G000640 Rw0G022340 Rw1G003330 Rw3G020470 Rw3G020800 Rw5G019360 Rw5G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	248
AccI	GTMKAC	1 cut(s)	9
AccII	CGCG	2 cut(s)	179, 740
AccIII	TCCGGA	1 cut(s)	733
AciI	CCGC	1 cut(s)	20
AcoI	YGGCCR	2 cut(s)	816, 967
AcsI	RAATTY	2 cut(s)	464, 942
AcuI	CTGAAG	1 cut(s)	402
AfiI	CCNNNNNNNGG	2 cut(s)	201, 447
AgsI	TTSAA	6 cut(s)	131, 139, 471, 586, 692, 947
AjiI	CACGTC	1 cut(s)	151
AluBI	AGCT	6 cut(s)	112, 237, 244, 386, 542, 567
AluI	AGCT	6 cut(s)	112, 237, 244, 386, 542, 567
Alw21I	GWGCWC	1 cut(s)	569
Alw26I	GTCTC	3 cut(s)	406, 543, 986
Ama87I	CYCGRG	1 cut(s)	504
Aor13HI	TCCGGA	1 cut(s)	733
AoxI	GGCC	2 cut(s)	816, 967
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	2 cut(s)	464, 942
AseI	ATTAAT	1 cut(s)	516
Asp700I	GAANNNNTTC	1 cut(s)	387
AspLEI	GCGC	3 cut(s)	173, 179, 742
AsuC2I	CCSGG	1 cut(s)	596
AsuHPI	GGTGA	4 cut(s)	232, 350, 430, 649
AsuNHI	GCTAGC	2 cut(s)	163, 173
AvaI	CYCGRG	1 cut(s)	504
BaeGI	GKGCMC	1 cut(s)	863
BalI	TGGCCA	1 cut(s)	818
BanII	GRGCYC	2 cut(s)	46, 569
BarI	GAAGNNNNNNTAC	2 cut(s)	672, 704
Bbv12I	GWGCWC	1 cut(s)	569
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	3 cut(s)	67, 451, 871
BcnI	CCSGG	1 cut(s)	596
BcoDI	GTCTC	3 cut(s)	406, 543, 986
BfaI	CTAG	3 cut(s)	164, 174, 629
BfmI	CTRYAG	1 cut(s)	543
BglII	AGATCT	1 cut(s)	760
BisI	GCNGC	1 cut(s)	543
BlsI	GCNGC	1 cut(s)	544
Bme1390I	CCNGG	1 cut(s)	596
BmeT110I	CYCGRG	1 cut(s)	504
BmgBI	CACGTC	1 cut(s)	151
BmiI	GGNNCC	2 cut(s)	43, 938
BmrFI	CCNGG	1 cut(s)	596
BmtI	GCTAGC	2 cut(s)	167, 177
BplI	GAGNNNNNCTC	4 cut(s)	425, 457, 551, 583
BpmI	CTGGAG	1 cut(s)	970
BpuMI	CCSGG	1 cut(s)	596
BsaBI	GATNNNNATC	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	986
BsaJI	CCNNGG	1 cut(s)	226
BsaWI	WCCGGW	1 cut(s)	733
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 447
Bse8I	GATNNNNATC	1 cut(s)	69
BseAI	TCCGGA	1 cut(s)	733
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	1 cut(s)	59
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	201, 447
BseMII	CTCAG	4 cut(s)	210, 231, 380, 426
BseRI	GAGGAG	2 cut(s)	184, 274
BseSI	GKGCMC	1 cut(s)	863
BseXI	GCAGC	1 cut(s)	529
Bsh1236I	CGCG	2 cut(s)	179, 740
BshFI	GGCC	2 cut(s)	818, 969
BsiHKAI	GWGCWC	1 cut(s)	569
BsiHKCI	CYCGRG	1 cut(s)	504
BsiSI	CCGG	2 cut(s)	596, 734
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	2 cut(s)	201, 447
BsmAI	GTCTC	3 cut(s)	406, 543, 986
BsmFI	GGGAC	1 cut(s)	355
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	2 cut(s)	818, 969
Bso31I	GGTCTC	1 cut(s)	986
BsoBI	CYCGRG	1 cut(s)	504
Bsp1286I	GDGCHC	3 cut(s)	46, 569, 863
Bsp13I	TCCGGA	1 cut(s)	733
Bsp143I	GATC	2 cut(s)	673, 760
Bsp19I	CCATGG	1 cut(s)	226
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	2 cut(s)	818, 969
BspCNI	CTCAG	4 cut(s)	209, 232, 379, 425
BspEI	TCCGGA	1 cut(s)	733
BspFNI	CGCG	2 cut(s)	179, 740
BspHI	TCATGA	1 cut(s)	696
BspLI	GGNNCC	2 cut(s)	43, 938
BspMAI	CTGCAG	1 cut(s)	547
BspOI	GCTAGC	2 cut(s)	167, 177
BspQI	GCTCTTC	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	986
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	2 cut(s)	673, 760
BssT1I	CCWWGG	1 cut(s)	226
Bst4CI	ACNGT	1 cut(s)	647
Bst6I	CTCTTC	1 cut(s)	134
BstC8I	GCNNGC	5 cut(s)	110, 165, 169, 175, 501
BstDEI	CTNAG	5 cut(s)	196, 240, 366, 412, 446
BstDSI	CCRYGG	1 cut(s)	226
BstENI	CCTNNNNNAGG	1 cut(s)	445
BstF5I	GGATG	1 cut(s)	59
BstFNI	CGCG	2 cut(s)	179, 740
BstHHI	GCGC	3 cut(s)	173, 179, 742
BstKTI	GATC	2 cut(s)	676, 763
BstMAI	GTCTC	3 cut(s)	406, 543, 986
BstMBI	GATC	2 cut(s)	673, 760
BstMWI	GCNNNNNNNGC	2 cut(s)	579, 588
BstNSI	RCATGY	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	594
BstSFI	CTRYAG	1 cut(s)	543
BstSLI	GKGCMC	1 cut(s)	863
BstUI	CGCG	2 cut(s)	179, 740
BstV1I	GCAGC	1 cut(s)	529
BstX2I	RGATCY	1 cut(s)	760
BstYI	RGATCY	1 cut(s)	760
BsuRI	GGCC	2 cut(s)	818, 969
BtgI	CCRYGG	1 cut(s)	226
BtrI	CACGTC	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	59
BtsIMutI	CAGTG	2 cut(s)	639, 652
Cac8I	GCNNGC	5 cut(s)	110, 165, 169, 175, 501
CciI	TCATGA	1 cut(s)	696
CfoI	GCGC	3 cut(s)	173, 179, 742
CseI	GACGC	1 cut(s)	746
CviAII	CATG	9 cut(s)	83, 146, 168, 227, 478, 570, 697, 774, 814
DdeI	CTNAG	5 cut(s)	196, 240, 366, 412, 446
DpnI	GATC	2 cut(s)	675, 762
DpnII	GATC	2 cut(s)	673, 760
EaeI	YGGCCR	2 cut(s)	816, 967
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Ecl136II	GAGCTC	1 cut(s)	567
Eco130I	CCWWGG	1 cut(s)	226
Eco24I	GRGCYC	2 cut(s)	46, 569
Eco31I	GGTCTC	1 cut(s)	986
Eco53kI	GAGCTC	1 cut(s)	567
Eco57I	CTGAAG	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	504
EcoICRI	GAGCTC	1 cut(s)	567
EcoNI	CCTNNNNNAGG	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	226
EcoT38I	GRGCYC	2 cut(s)	46, 569
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	9 cut(s)	86, 149, 171, 230, 481, 573, 700, 777, 817
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	9 cut(s)	82, 145, 167, 226, 477, 569, 696, 773, 813
FauI	CCCGC	1 cut(s)	27
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	543
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	2 cut(s)	46, 569
Fsp4HI	GCNGC	1 cut(s)	543
FspBI	CTAG	3 cut(s)	164, 174, 629
GlaI	GCGC	3 cut(s)	172, 178, 741
GluI	GCNGC	1 cut(s)	543
GsuI	CTGGAG	1 cut(s)	970
HaeIII	GGCC	2 cut(s)	818, 969
HapII	CCGG	2 cut(s)	596, 734
HgaI	GACGC	1 cut(s)	746
HhaI	GCGC	3 cut(s)	173, 179, 742
Hin1II	CATG	9 cut(s)	86, 149, 171, 230, 481, 573, 700, 777, 817
Hin6I	GCGC	3 cut(s)	171, 177, 740
HinP1I	GCGC	3 cut(s)	171, 177, 740
HincII	GTYRAC	1 cut(s)	751
HindII	GTYRAC	1 cut(s)	751
HindIII	AAGCTT	1 cut(s)	384
HinfI	GANTC	7 cut(s)	11, 343, 560, 586, 704, 872, 896
HpaII	CCGG	2 cut(s)	596, 734
HphI	GGTGA	4 cut(s)	232, 350, 430, 649
Hpy166II	GTNNAC	5 cut(s)	10, 223, 438, 751, 918
Hpy188I	TCNGA	5 cut(s)	64, 199, 241, 382, 415
Hpy188III	TCNNGA	6 cut(s)	524, 697, 734, 947, 958, 987
Hpy8I	GTNNAC	5 cut(s)	10, 223, 438, 751, 918
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	1 cut(s)	647
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	3 cut(s)	52, 545, 891
HpyF10VI	GCNNNNNNNGC	2 cut(s)	579, 588
HpyF3I	CTNAG	5 cut(s)	196, 240, 366, 412, 446
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	9 cut(s)	86, 149, 171, 230, 481, 573, 700, 777, 817
HspAI	GCGC	3 cut(s)	171, 177, 740
Kpn2I	TCCGGA	1 cut(s)	733
Kzo9I	GATC	2 cut(s)	673, 760
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	4 cut(s)	41, 117, 777, 936
Lsp1109I	GCAGC	1 cut(s)	529
MaeI	CTAG	3 cut(s)	164, 174, 629
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	2 cut(s)	675, 762
MboI	GATC	2 cut(s)	673, 760
MboII	GAAGA	6 cut(s)	113, 151, 265, 310, 569, 962
MflI	RGATCY	1 cut(s)	760
MhlI	GDGCHC	3 cut(s)	46, 569, 863
MlsI	TGGCCA	1 cut(s)	818
MluCI	AATT	4 cut(s)	325, 464, 513, 942
MluNI	TGGCCA	1 cut(s)	818
MlyI	GAGTC	4 cut(s)	5, 337, 569, 698
MmeI	TCCRAC	2 cut(s)	371, 507
Mox20I	TGGCCA	1 cut(s)	818
MroI	TCCGGA	1 cut(s)	733
MroXI	GAANNNNTTC	1 cut(s)	387
MscI	TGGCCA	1 cut(s)	818
MseI	TTAA	3 cut(s)	294, 516, 878
MslI	CAYNNNNRTG	1 cut(s)	36
Msp20I	TGGCCA	1 cut(s)	818
MspI	CCGG	2 cut(s)	596, 734
MspR9I	CCNGG	1 cut(s)	596
Mva1269I	GAATGC	1 cut(s)	110
MvnI	CGCG	2 cut(s)	179, 740
MwoI	GCNNNNNNNGC	2 cut(s)	579, 588
NciI	CCSGG	1 cut(s)	596
NcoI	CCATGG	1 cut(s)	226
NdeII	GATC	2 cut(s)	673, 760
NheI	GCTAGC	2 cut(s)	163, 173
NlaIII	CATG	9 cut(s)	86, 149, 171, 230, 481, 573, 700, 777, 817
NlaIV	GGNNCC	2 cut(s)	43, 938
NmeAIII	GCCGAG	1 cut(s)	945
NspI	RCATGY	1 cut(s)	171
PaeI	GCATGC	1 cut(s)	171
PagI	TCATGA	1 cut(s)	696
PciSI	GCTCTTC	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	744
PctI	GAATGC	1 cut(s)	110
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	3 cut(s)	586, 872, 896
PkrI	GCNGC	1 cut(s)	544
PleI	GAGTC	4 cut(s)	5, 337, 568, 698
PpsI	GAGTC	4 cut(s)	5, 337, 568, 698
PshBI	ATTAAT	1 cut(s)	516
PsiI	TTATAA	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	569
PspN4I	GGNNCC	2 cut(s)	43, 938
PstI	CTGCAG	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	760
RseI	CAYNNNNRTG	1 cut(s)	36
SacI	GAGCTC	1 cut(s)	569
SapI	GCTCTTC	1 cut(s)	134
SaqAI	TTAA	3 cut(s)	294, 516, 878
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	2 cut(s)	673, 760
SchI	GAGTC	4 cut(s)	5, 337, 569, 698
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	3 cut(s)	46, 569, 863
SfcI	CTRYAG	1 cut(s)	543
SmiMI	CAYNNNNRTG	1 cut(s)	36
SphI	GCATGC	1 cut(s)	171
Sse9I	AATT	4 cut(s)	325, 464, 513, 942
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	3 cut(s)	164, 174, 629
SstI	GAGCTC	1 cut(s)	569
StyD4I	CCNGG	1 cut(s)	594
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	647
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	3 cut(s)	525, 563, 842
TaqII	GACCGA	1 cut(s)	968
TasI	AATT	4 cut(s)	325, 464, 513, 942
TfiI	GAWTC	3 cut(s)	586, 872, 896
Tru1I	TTAA	3 cut(s)	294, 516, 878
Tru9I	TTAA	3 cut(s)	294, 516, 878
TscAI	CASTG	2 cut(s)	646, 652
TseI	GCWGC	1 cut(s)	542
TspDTI	ATGAA	2 cut(s)	99, 713
TspGWI	ACGGA	1 cut(s)	845
TspRI	CASTG	2 cut(s)	646, 652
VspI	ATTAAT	1 cut(s)	516
XagI	CCTNNNNNAGG	1 cut(s)	445
XapI	RAATTY	2 cut(s)	464, 942
XceI	RCATGY	1 cut(s)	171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	9
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	3 cut(s)	164, 174, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.