Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000611

Physical Location & Seq

Genomic Coordinates Reverse (-)

15442537 .. 15444384

Gene Structure 1848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0180300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGATTGGACCAACACCAACTTGAGGCAGCAGCAGCACCACCACCTTGTTTCTCGACCTGAACCTTCCTTTGGTTTCCTCTACAACTATAACTTCGACCCTTTTCCTCATCCTGGCATGGAGATGAAGCATCATCAAGCCATGTTCTCCGAGACACCACAAGGATCGGTTCCTTCTTCCATGGAGAGGAACAGTCATCATGTCATGAGTTACGGCTGCAACAGTCAAGAGAAGAAGAAGCGATTGTCAACCGATCAGTTAGAGTCACTGGAGAGGAGTTTCCAAGAGGAGATAAAGCTGGACCCTGATAGGAAGATGAAGCTATCGAGAGATCTCGGCCTTCAGCCTCGGCAAATCGCTGTTTGGTTCCAAAACCGACGAGCTAGGTGGAAGGCCAAGCAGCTCGAACGCTTGTACGATGCGCTCAAACAAGATTATGACGCCGTCTCTAAAGAGAAGCAAAAGCTTCAAGACGAGGTCATGAAACTGAAGACTATTCTGAGAGAAGAAGTTGCTAGGAAGCAGGTTTCTCCGGGCTACACTGAAATCTCCGGCGAAGAGACAGTGGAAAGCACTTCGGTTGCTGCCATTCGAAGCTCGAACAAGGCAGGAGGGGTGAGCCAGCATCAGATTGCAGAGGGCAACTATCTTTTCAATGTTGAGGAGTATAACCCTGTATCACCACCTTACTGGGGTGCCCTGCCTTCTTATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Myb_DNA-binding RRM_1

Protein Analysis

238

Amino Acids

27.66

Weight (kDa)

7.85

Isoelectric Point (pI)

63.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	78 - 131	4.5e-17	Homeodomain
HALZ	PF02183	133 - 167	1.1e-08	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15010 AT3G15010
fragaria_vesca	FvH4_3g07890 FvH4_3g18630 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550
malus_domestica	MD03G1240500.v1.1 MD10G1280800.v1.1 MD11G1259900.v1.1 MD12G1058300.v1.1
prunus_persica	Prupe.4G060300_v2.0.a1 Prupe.4G170100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1
pyrus_communis	pycom12g05260
rosa_chinensis	RchiOBHm_Chr1g0364191 RchiOBHm_Chr3g0480051 RchiOBHm_Chr5g0010701 RchiOBHm_Chr5g0031451
rosa_laevigata	RLG00000023519 RLG00000031772 RLG00000033308
rosa_multiflora	Rmu_co8296297.1_g000001 Rmu_sc0003684.1_g000004 Rmu_sc0006604.1_g000017 Rmu_sc0008864.1_g000013 Rmu_sc0013975.1_g000001 Rmu_sc0021762.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005170 Rroxscaffold_1G00065690 Rroxscaffold_6G00401800
rosa_rugosa	Rorug03G0180200 Rorug03G0180300 Rorug03G0180400 Rorug03G0180500 Rorug04G0451600 Rorug04G0451700 Rorug05G0125900
rosa_samantha	Rh1AG051900 Rh1AG321800 Rh1CG005400 Rh1CG301300 Rh1DG000800 Rh3AG231300 Rh3BG263700 Rh3CG261200 Rh3DG257100 Rh3DG316100 Rh4AG036900 Rh4AG037000 Rh4BG212900 Rh4BG213000 Rh4CG196500 Rh4DG300800 Rh4DG300900 Rh4DG301000 Rh5AG083400 Rh5AG218600 Rh5BG078600 Rh5BG218000 Rh5CG091400 Rh5CG241600 Rh5DG078800 Rh5DG223200 Rh7BG406600 Rh7DG422300
rosa_wichuraiana	Rw0G000640 Rw0G022340 Rw1G003330 Rw3G020470 Rw3G020800 Rw5G019360 Rw5G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	514
AccB1I	GGYRCC	1 cut(s)	695
AclWI	GGATC	1 cut(s)	172
AcuI	CTGAAG	2 cut(s)	326, 509
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	5 cut(s)	24, 71, 113, 186, 692
AgsI	TTSAA	2 cut(s)	470, 655
AjnI	CCWGG	1 cut(s)	112
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AluBI	AGCT	6 cut(s)	298, 322, 383, 403, 466, 597
AluI	AGCT	6 cut(s)	298, 322, 383, 403, 466, 597
Alw26I	GTCTC	3 cut(s)	146, 451, 554
AlwI	GGATC	1 cut(s)	172
AoxI	GGCC	2 cut(s)	337, 393
ApeKI	GCWGC	6 cut(s)	28, 31, 34, 216, 400, 584
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	2 cut(s)	9, 301
AsuC2I	CCSGG	1 cut(s)	534
AsuHPI	GGTGA	2 cut(s)	628, 672
AsuII	TTCGAA	1 cut(s)	592
AvaII	GGWCC	2 cut(s)	9, 301
BaeGI	GKGCMC	1 cut(s)	700
BanI	GGYRCC	1 cut(s)	695
BbsI	GAAGAC	1 cut(s)	497
BbvI	GCAGC	6 cut(s)	40, 43, 46, 203, 412, 571
BceAI	ACGGC	2 cut(s)	229, 428
BciT130I	CCWGG	1 cut(s)	114
BcnI	CCSGG	1 cut(s)	534
BcoDI	GTCTC	3 cut(s)	146, 451, 554
BfaI	CTAG	2 cut(s)	384, 516
BfuAI	ACCTGC	1 cut(s)	514
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	6 cut(s)	29, 32, 35, 217, 401, 585
BlsI	GCNGC	6 cut(s)	30, 33, 36, 218, 402, 586
Bme1390I	CCNGG	2 cut(s)	114, 534
Bme18I	GGWCC	2 cut(s)	9, 301
BmgT120I	GGNCC	2 cut(s)	9, 301
BmiI	GGNNCC	4 cut(s)	171, 303, 368, 697
BmrFI	CCNGG	2 cut(s)	114, 534
BmrI	ACTGGG	1 cut(s)	700
BmsI	GCATC	3 cut(s)	139, 409, 634
BmuI	ACTGGG	1 cut(s)	700
BpiI	GAAGAC	1 cut(s)	497
BpmI	CTGGAG	1 cut(s)	290
Bpu14I	TTCGAA	1 cut(s)	592
BpuEI	CTTGAG	1 cut(s)	43
BpuMI	CCSGG	1 cut(s)	534
BsaHI	GRCGYC	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	180, 347
Bsc4I	CCNNNNNNNGG	5 cut(s)	24, 71, 113, 186, 692
Bse1I	ACTGG	2 cut(s)	273, 695
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	180, 347
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	5 cut(s)	24, 71, 113, 186, 692
BseMII	CTCAG	1 cut(s)	491
BseNI	ACTGG	2 cut(s)	273, 695
BseRI	GAGGAG	3 cut(s)	289, 302, 677
BseSI	GKGCMC	1 cut(s)	700
BseXI	GCAGC	6 cut(s)	40, 43, 46, 203, 412, 571
BshFI	GGCC	2 cut(s)	339, 395
BshNI	GGYRCC	1 cut(s)	695
BsiSI	CCGG	2 cut(s)	533, 552
BslI	CCNNNNNNNGG	5 cut(s)	24, 71, 113, 186, 692
BsmAI	GTCTC	3 cut(s)	146, 451, 554
BsmBI	CGTCTC	1 cut(s)	451
BsnI	GGCC	2 cut(s)	339, 395
Bsp119I	TTCGAA	1 cut(s)	592
Bsp1286I	GDGCHC	1 cut(s)	700
Bsp143I	GATC	3 cut(s)	164, 253, 331
Bsp19I	CCATGG	1 cut(s)	180
BspANI	GGCC	2 cut(s)	339, 395
BspCNI	CTCAG	1 cut(s)	492
BspHI	TCATGA	2 cut(s)	204, 480
BspLI	GGNNCC	4 cut(s)	171, 303, 368, 697
BspMI	ACCTGC	1 cut(s)	514
BspPI	GGATC	1 cut(s)	172
BspT104I	TTCGAA	1 cut(s)	592
BspT107I	GGYRCC	1 cut(s)	695
BsrI	ACTGG	2 cut(s)	273, 695
BssECI	CCNNGG	2 cut(s)	180, 347
BssMI	GATC	3 cut(s)	164, 253, 331
BssNI	GRCGYC	1 cut(s)	441
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	3 cut(s)	194, 224, 565
Bst6I	CTCTTC	1 cut(s)	552
BstACI	GRCGYC	1 cut(s)	441
BstBI	TTCGAA	1 cut(s)	592
BstC8I	GCNNGC	1 cut(s)	623
BstDEI	CTNAG	1 cut(s)	500
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	109
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	3 cut(s)	167, 256, 334
BstMAI	GTCTC	3 cut(s)	146, 451, 554
BstMBI	GATC	3 cut(s)	164, 253, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	2 cut(s)	112, 532
BstSLI	GKGCMC	1 cut(s)	700
BstV1I	GCAGC	6 cut(s)	40, 43, 46, 203, 412, 571
BstV2I	GAAGAC	1 cut(s)	497
BstX2I	RGATCY	1 cut(s)	331
BstXI	CCANNNNNNTGG	1 cut(s)	690
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	339, 395
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	3 cut(s)	266, 540, 570
BveI	ACCTGC	1 cut(s)	514
Cac8I	GCNNGC	1 cut(s)	623
CciI	TCATGA	2 cut(s)	204, 480
CfoI	GCGC	1 cut(s)	424
Cfr13I	GGNCC	2 cut(s)	9, 301
CseI	GACGC	1 cut(s)	449
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	6 cut(s)	118, 142, 181, 200, 205, 481
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	1 cut(s)	500
DpnI	GATC	3 cut(s)	166, 255, 333
DpnII	GATC	3 cut(s)	164, 253, 331
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	180
Eco47I	GGWCC	2 cut(s)	9, 301
Eco57I	CTGAAG	2 cut(s)	326, 509
EcoRII	CCWGG	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	451
FaeI	CATG	6 cut(s)	121, 145, 184, 203, 208, 484
FaiI	YATR	9 cut(s)	90, 119, 143, 182, 201, 206, 438, 482, 669
FatI	CATG	6 cut(s)	117, 141, 180, 199, 204, 480
Fnu4HI	GCNGC	6 cut(s)	29, 32, 35, 217, 401, 585
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	6 cut(s)	29, 32, 35, 217, 401, 585
FspBI	CTAG	2 cut(s)	384, 516
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	6 cut(s)	29, 32, 35, 217, 401, 585
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	339, 395
HapII	CCGG	2 cut(s)	533, 552
HgaI	GACGC	1 cut(s)	449
HhaI	GCGC	1 cut(s)	424
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	6 cut(s)	121, 145, 184, 203, 208, 484
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	1 cut(s)	263
HpaII	CCGG	2 cut(s)	533, 552
HphI	GGTGA	2 cut(s)	628, 672
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	3 cut(s)	151, 501, 630
Hpy188III	TCNNGA	6 cut(s)	54, 205, 227, 327, 470, 481
Hpy8I	GTNNAC	1 cut(s)	249
Hpy99I	CGWCG	1 cut(s)	381
HpyAV	CCTTC	5 cut(s)	75, 183, 350, 385, 714
HpyCH4III	ACNGT	3 cut(s)	194, 224, 565
HpyCH4V	TGCA	2 cut(s)	219, 635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpyF3I	CTNAG	1 cut(s)	500
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	6 cut(s)	121, 145, 184, 203, 208, 484
HspAI	GCGC	1 cut(s)	422
Kzo9I	GATC	3 cut(s)	164, 253, 331
Lsp1109I	GCAGC	6 cut(s)	40, 43, 46, 203, 412, 571
LweI	GCATC	3 cut(s)	139, 409, 634
MaeI	CTAG	2 cut(s)	384, 516
MaeIII	GTNAC	2 cut(s)	209, 264
MalI	GATC	3 cut(s)	166, 255, 333
MboI	GATC	3 cut(s)	164, 253, 331
MboII	GAAGA	7 cut(s)	168, 244, 247, 325, 502, 518, 569
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	700
MlyI	GAGTC	1 cut(s)	272
MslI	CAYNNNNRTG	1 cut(s)	122
MspI	CCGG	2 cut(s)	533, 552
MspR9I	CCNGG	2 cut(s)	114, 534
MvaI	CCWGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	34
NciI	CCSGG	1 cut(s)	534
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	3 cut(s)	164, 253, 331
NlaIII	CATG	6 cut(s)	121, 145, 184, 203, 208, 484
NlaIV	GGNNCC	4 cut(s)	171, 303, 368, 697
NmeAIII	GCCGAG	2 cut(s)	315, 328
NmuCI	GTSAC	1 cut(s)	264
NspV	TTCGAA	1 cut(s)	592
PagI	TCATGA	2 cut(s)	204, 480
PflFI	GACNNNGTC	2 cut(s)	443, 476
PkrI	GCNGC	6 cut(s)	30, 33, 36, 218, 402, 586
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	4 cut(s)	171, 303, 368, 697
PspPI	GGNCC	2 cut(s)	9, 301
PsuI	RGATCY	1 cut(s)	331
PsyI	GACNNNGTC	2 cut(s)	443, 476
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
RseI	CAYNNNNRTG	1 cut(s)	122
SatI	GCNGC	6 cut(s)	29, 32, 35, 217, 401, 585
Sau3AI	GATC	3 cut(s)	164, 253, 331
Sau96I	GGNCC	2 cut(s)	9, 301
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	2 cut(s)	114, 534
SduI	GDGCHC	1 cut(s)	700
SfaNI	GCATC	3 cut(s)	139, 409, 634
SfuI	TTCGAA	1 cut(s)	592
SinI	GGWCC	2 cut(s)	9, 301
SmiMI	CAYNNNNRTG	1 cut(s)	122
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
SspMI	CTAG	2 cut(s)	384, 516
StyD4I	CCNGG	2 cut(s)	112, 532
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	3 cut(s)	194, 224, 565
TaqI	TCGA	6 cut(s)	55, 96, 326, 405, 592, 599
TscAI	CASTG	3 cut(s)	273, 547, 570
TseFI	GTSAC	1 cut(s)	264
TseI	GCWGC	6 cut(s)	28, 31, 34, 216, 400, 584
Tsp45I	GTSAC	1 cut(s)	264
TspDTI	ATGAA	3 cut(s)	140, 332, 497
TspRI	CASTG	3 cut(s)	273, 547, 570
Tth111I	GACNNNGTC	2 cut(s)	443, 476
VpaK11BI	GGWCC	2 cut(s)	9, 301
XspI	CTAG	2 cut(s)	384, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.