Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000611

Physical Location & Seq

Genomic Coordinates Reverse (-)

52267348 .. 52270379

Gene Structure 3032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG300800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGCAGCCGGGCATGTTTAGGCCACAGCCTCAGCCCGGGCAGTACCCGGTTTTTGCTGGTGGGCATGCGCCAGTGGTTCCTAGGTATAATACTAATTTCAGTCACTATGGGGTGCCTCCACAGTTGCCTCCAACTTCGGTAGGAATGCCTCATGGAGTCTATCCAGACAGTTCGCGGTATGGGGTTCCTCCACCACAGCATCATCAGGCTCCCTCAATGCCAAGAGGACCACCTGGGGGAATTAGGCAGATGGATGAAAATGTTTATAAAGTTGAGGTGACTGCTCATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

97

Amino Acids

10.62

Weight (kDa)

8.17

Isoelectric Point (pI)

61.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15010 AT3G15010
fragaria_vesca	FvH4_3g07890 FvH4_3g18630 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550
malus_domestica	MD03G1240500.v1.1 MD10G1280800.v1.1 MD11G1259900.v1.1 MD12G1058300.v1.1
prunus_persica	Prupe.4G060300_v2.0.a1 Prupe.4G170100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1
pyrus_communis	pycom12g05260
rosa_chinensis	RchiOBHm_Chr1g0364191 RchiOBHm_Chr3g0480051 RchiOBHm_Chr5g0010701 RchiOBHm_Chr5g0031451
rosa_laevigata	RLG00000023519 RLG00000031772 RLG00000033308
rosa_multiflora	Rmu_co8296297.1_g000001 Rmu_sc0003684.1_g000004 Rmu_sc0006604.1_g000017 Rmu_sc0008864.1_g000013 Rmu_sc0013975.1_g000001 Rmu_sc0021762.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005170 Rroxscaffold_1G00065690 Rroxscaffold_6G00401800
rosa_rugosa	Rorug03G0180200 Rorug03G0180300 Rorug03G0180400 Rorug03G0180500 Rorug04G0451600 Rorug04G0451700 Rorug05G0125900
rosa_samantha	Rh1AG051900 Rh1AG321800 Rh1CG005400 Rh1CG301300 Rh1DG000800 Rh3AG231300 Rh3BG263700 Rh3CG261200 Rh3DG257100 Rh3DG316100 Rh4AG036900 Rh4AG037000 Rh4BG212900 Rh4BG213000 Rh4CG196500 Rh4DG300800 Rh4DG300900 Rh4DG301000 Rh5AG083400 Rh5AG218600 Rh5BG078600 Rh5BG218000 Rh5CG091400 Rh5CG241600 Rh5DG078800 Rh5DG223200 Rh7BG406600 Rh7DG422300
rosa_wichuraiana	Rw0G000640 Rw0G022340 Rw1G003330 Rw3G020470 Rw3G020800 Rw5G019360 Rw5G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	112
AccII	CGCG	1 cut(s)	175
AciI	CCGC	1 cut(s)	175
AfaI	GTAC	1 cut(s)	44
AfiI	CCNNNNNNNGG	2 cut(s)	35, 236
AjnI	CCWGG	1 cut(s)	232
Ama87I	CYCGRG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	4
AspA2I	CCTAGG	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	227
AsuC2I	CCSGG	4 cut(s)	9, 36, 37, 47
AsuHPI	GGTGA	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	227
AvrII	CCTAGG	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	112
BbvCI	CCTCAGC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	244
BciT130I	CCWGG	1 cut(s)	234
BcnI	CCSGG	4 cut(s)	9, 36, 37, 47
BfaI	CTAG	1 cut(s)	81
BisI	GCNGC	1 cut(s)	5
BlnI	CCTAGG	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	5 cut(s)	9, 36, 37, 47, 234
Bme18I	GGWCC	1 cut(s)	227
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	4 cut(s)	78, 114, 186, 210
BmrFI	CCNGG	5 cut(s)	9, 36, 37, 47, 234
BmsI	GCATC	1 cut(s)	208
Bpu10I	CCTNAGC	1 cut(s)	30
BpuMI	CCSGG	4 cut(s)	9, 36, 37, 47
BsaJI	CCNNGG	3 cut(s)	35, 80, 233
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 236
Bse1I	ACTGG	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	3 cut(s)	35, 80, 233
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	35, 236
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	16
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	22
BshNI	GGYRCC	1 cut(s)	112
BsiHKCI	CYCGRG	1 cut(s)	35
BsiSI	CCGG	3 cut(s)	8, 36, 47
BslI	CCNNNNNNNGG	2 cut(s)	35, 236
BsmI	GAATGC	1 cut(s)	150
BsnI	GGCC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	35
BspACI	CCGC	1 cut(s)	175
BspANI	GGCC	1 cut(s)	22
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	1 cut(s)	175
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	4 cut(s)	78, 114, 186, 210
BspT107I	GGYRCC	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	71
BssECI	CCNNGG	3 cut(s)	35, 80, 233
BssT1I	CCWWGG	1 cut(s)	80
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	2 cut(s)	123, 170
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	259
BstFNI	CGCG	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	70
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	2 cut(s)	16, 68
BstSCI	CCNGG	5 cut(s)	7, 34, 35, 45, 232
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	66
CciI	TCATGA	1 cut(s)	286
CfoI	GCGC	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	227
Cfr9I	CCCGGG	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	43
CviAII	CATG	4 cut(s)	13, 65, 152, 287
CviJI	RGCY	5 cut(s)	7, 22, 28, 34, 209
CviKI_1	RGCY	5 cut(s)	7, 22, 28, 34, 209
CviQI	GTAC	1 cut(s)	43
DdeI	CTNAG	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	227
Eco88I	CYCGRG	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	4 cut(s)	16, 68, 155, 290
FaiI	YATR	8 cut(s)	14, 66, 87, 108, 153, 180, 267, 288
FatI	CATG	4 cut(s)	12, 64, 151, 286
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	3 cut(s)	8, 36, 47
HhaI	GCGC	1 cut(s)	70
Hin1II	CATG	4 cut(s)	16, 68, 155, 290
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HinfI	GANTC	1 cut(s)	156
HpaII	CCGG	3 cut(s)	8, 36, 47
HphI	GGTGA	1 cut(s)	289
Hpy188III	TCNNGA	2 cut(s)	164, 287
HpyCH4III	ACNGT	2 cut(s)	123, 170
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	30
Hsp92II	CATG	4 cut(s)	16, 68, 155, 290
HspAI	GCGC	1 cut(s)	68
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	9 cut(s)	21, 42, 49, 60, 84, 177, 191, 219, 246
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	101, 277
MluCI	AATT	2 cut(s)	94, 240
MlyI	GAGTC	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	8 cut(s)	39, 126, 138, 159, 198, 218, 223, 268
MspI	CCGG	3 cut(s)	8, 36, 47
MspR9I	CCNGG	5 cut(s)	9, 36, 37, 47, 234
Mva1269I	GAATGC	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	175
NciI	CCSGG	4 cut(s)	9, 36, 37, 47
NlaIII	CATG	4 cut(s)	16, 68, 155, 290
NlaIV	GGNNCC	4 cut(s)	78, 114, 186, 210
NmuCI	GTSAC	2 cut(s)	101, 277
NspI	RCATGY	2 cut(s)	16, 68
PaeI	GCATGC	1 cut(s)	68
PagI	TCATGA	1 cut(s)	286
PctI	GAATGC	1 cut(s)	150
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PsiI	TTATAA	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	4 cut(s)	78, 114, 186, 210
PspPI	GGNCC	1 cut(s)	227
RsaI	GTAC	1 cut(s)	44
RsaNI	GTAC	1 cut(s)	43
SatI	GCNGC	1 cut(s)	5
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	1 cut(s)	165
ScrFI	CCNGG	5 cut(s)	9, 36, 37, 47, 234
SetI	ASST	3 cut(s)	86, 235, 279
SfaNI	GCATC	1 cut(s)	208
SinI	GGWCC	1 cut(s)	227
SmaI	CCCGGG	1 cut(s)	37
SphI	GCATGC	1 cut(s)	68
SrfI	GCCCGGGC	1 cut(s)	37
Sse9I	AATT	2 cut(s)	94, 240
SsiI	CCGC	1 cut(s)	175
SspMI	CTAG	1 cut(s)	81
StyD4I	CCNGG	5 cut(s)	7, 34, 35, 45, 232
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	2 cut(s)	123, 170
TasI	AATT	2 cut(s)	94, 240
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	2 cut(s)	101, 277
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	2 cut(s)	101, 277
TspDTI	ATGAA	1 cut(s)	270
TspMI	CCCGGG	1 cut(s)	35
TspRI	CASTG	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	227
XceI	RCATGY	2 cut(s)	16, 68
XmaI	CCCGGG	1 cut(s)	35
XmaJI	CCTAGG	1 cut(s)	80
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.