Rroxscaffold_1G00005170

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000611
Physical Location & Seq
Reverse (-)
6995453 .. 7000511
5059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005170.1

Sequence Viewer

Length: 1047 bp
ATGCGCCGGCCGGGACATTCGGCGCGGTTCGATGCGAGCAACGGCGGCGCCGATGTCTCGGCGAGGAAGATTTACGTCGCGACGGTGCCGTTTGATATCTCCTCGGAGAGATTGTTGTCTGCGTTTTCGGCTTTCGGAGAGATTGAAGAAGGTCCTCTAGGGTTTGATAAGGCCACCGGAAAATCAAAGGGCTTTTCATTCTTCGTGTACAAGGCCGAAGAAGGTGCCGAGGCCGCTCTCATTGAGCCTTTGAAAAACATTGATGGTCCTCGTGTGACTTGCAAATTAGCTGTGGATAACAAGAAGGGCAAACACGGTGGCGCCCAAGCCCTCCCGGTGATATTTCGGGGTCCTCCCCGCGCGACAAATGCGGCGGGCATGTTTAGGCCACGGCCTCGGCCGGGCGATGCACGGTTTTTTGGTGGGCATGAGCCGATGGTTCCTAGGTATAATACTAATTTCGGTCGGTATGTGGTGCCTCCACAGTTGCCTCCAAATTCGGTAGGAATGCCTCATGGAGTCTATCCGGACGAGTTCGTGGTATGGGGTTCCTCCACCACGACATCATCGAGCTCCCTCAATGCCAAGAAGACCACACAGGGGAATGTATCCGCCACCTTACTATTGAGAGTTAATTTGATTACTTGTTTGAACGGTGATGGGTATTTGGTTGAGTCCTTGAGAAGCTTCTTGGGCGCAAATGCTTTAAATGGTTATGAACTTATTCGAAAGGATAGTATGATTTTTGTGATACATGATTTGCCTCATGAGAACTGCTTAGCACGGAATGTGGTGCTAAATAAGATTAGTGCTACTTCACCAAATCTCCCTGCTGTTTCTTCACTACTGCTTCTAAGTGATATTGATATTAAGGTAGAACTCCAAAAGTGGCTTCATGAACAACTTGAGGAGAAGACTTCCTTGTACCTCCGCTTAAGAGGGATAAAGTTCGCATTGAATGCATCTACGATCGATACGAGAGGGAAAAGACGCGGACCGGCATTGAAAGCCCTTGTTCTTTTGGCATTGGAGGAATCCGGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

348

Amino Acids

37.79

Weight (kDa)

9.44

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 24 - 80 4.7e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 5 cut(s) 47, 85, 224, 320, 475
AccBSI CCGCTC 1 cut(s) 236
AccII CGCG 5 cut(s) 25, 80, 360, 362, 993
AccIII TCCGGA 2 cut(s) 526, 1037
AciI CCGC 9 cut(s) 25, 45, 234, 358, 371, 374, 612, 931, 993
AcoI YGGCCR 2 cut(s) 8, 398
AcsI RAATTY 1 cut(s) 496
AcyI GRCGYC 2 cut(s) 48, 321
AfaI GTAC 2 cut(s) 209, 926
AfiI CCNNNNNNNGG 2 cut(s) 401, 600
AflII CTTAAG 1 cut(s) 934
AgsI TTSAA 5 cut(s) 146, 253, 652, 958, 1006
AjuI GAANNNNNNNTTGG 2 cut(s) 876, 908
AluBI AGCT 3 cut(s) 290, 573, 687
AluI AGCT 3 cut(s) 290, 573, 687
Alw21I GWGCWC 1 cut(s) 575
Alw26I GTCTC 1 cut(s) 61
Aor13HI TCCGGA 2 cut(s) 526, 1037
AoxI GGCC 7 cut(s) 8, 171, 213, 231, 386, 392, 398
ApoI RAATTY 1 cut(s) 496
Asp700I GAANNNNTTC 1 cut(s) 723
AspA2I CCTAGG 1 cut(s) 443
AspLEI GCGC 6 cut(s) 6, 25, 50, 323, 362, 698
AspS9I GGNCC 4 cut(s) 152, 266, 350, 995
AsuC2I CCSGG 3 cut(s) 12, 335, 402
AsuHPI GGTGA 3 cut(s) 349, 668, 810
AsuII TTCGAA 1 cut(s) 727
AvaII GGWCC 4 cut(s) 152, 266, 350, 995
AvrII CCTAGG 1 cut(s) 443
BanI GGYRCC 5 cut(s) 47, 85, 224, 320, 475
BanII GRGCYC 1 cut(s) 575
BauI CACGAG 1 cut(s) 270
BbsI GAAGAC 2 cut(s) 596, 920
Bbv12I GWGCWC 1 cut(s) 575
BccI CCATC 3 cut(s) 257, 430, 653
BceAI ACGGC 3 cut(s) 58, 73, 407
BcgI CGANNNNNNTGC 2 cut(s) 206, 240
BciVI GTATCC 1 cut(s) 619
BcnI CCSGG 3 cut(s) 12, 335, 402
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 2 cut(s) 158, 444
BfoI RGCGCY 2 cut(s) 51, 324
BfrI CTTAAG 1 cut(s) 934
BfuI GTATCC 1 cut(s) 619
BisI GCNGC 3 cut(s) 46, 234, 372
BlnI CCTAGG 1 cut(s) 443
BlpI GCTNAGC 1 cut(s) 778
BlsI GCNGC 3 cut(s) 47, 235, 373
Bme1390I CCNGG 3 cut(s) 12, 335, 402
Bme18I GGWCC 4 cut(s) 152, 266, 350, 995
BmgT120I GGNCC 4 cut(s) 152, 266, 350, 995
BmiI GGNNCC 8 cut(s) 49, 87, 226, 322, 351, 441, 477, 550
BmrFI CCNGG 3 cut(s) 12, 335, 402
BmsI GCATC 3 cut(s) 22, 397, 971
BpiI GAAGAC 2 cut(s) 596, 920
Bpu1102I GCTNAGC 1 cut(s) 778
Bpu14I TTCGAA 1 cut(s) 727
BpuEI CTTGAG 2 cut(s) 700, 926
BpuMI CCSGG 3 cut(s) 12, 335, 402
Bsa29I ATCGAT 1 cut(s) 972
BsaHI GRCGYC 2 cut(s) 48, 321
BsaJI CCNNGG 5 cut(s) 102, 228, 389, 395, 443
BsaWI WCCGGW 3 cut(s) 176, 526, 1037
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 810, 840
Bsc4I CCNNNNNNNGG 2 cut(s) 401, 600
Bse118I RCCGGY 2 cut(s) 6, 997
BseAI TCCGGA 2 cut(s) 526, 1037
BseCI ATCGAT 1 cut(s) 972
BseDI CCNNGG 5 cut(s) 102, 228, 389, 395, 443
BseGI GGATG 1 cut(s) 1046
BseLI CCNNNNNNNGG 2 cut(s) 401, 600
BseRI GAGGAG 2 cut(s) 91, 923
BseX3I CGGCCG 2 cut(s) 8, 398
Bsh1236I CGCG 5 cut(s) 25, 80, 360, 362, 993
Bsh1285I CGRYCG 4 cut(s) 11, 401, 466, 972
BshFI GGCC 7 cut(s) 10, 173, 215, 233, 388, 394, 400
BshNI GGYRCC 5 cut(s) 47, 85, 224, 320, 475
BshVI ATCGAT 1 cut(s) 972
BsiEI CGRYCG 4 cut(s) 11, 401, 466, 972
BsiHKAI GWGCWC 1 cut(s) 575
BsiSI CCGG 8 cut(s) 7, 11, 177, 335, 401, 527, 998, 1038
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 2 cut(s) 401, 600
BsmAI GTCTC 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 27
BsmI GAATGC 2 cut(s) 513, 964
BsnI GGCC 7 cut(s) 10, 173, 215, 233, 388, 394, 400
Bsp119I TTCGAA 1 cut(s) 727
Bsp1286I GDGCHC 1 cut(s) 575
Bsp13I TCCGGA 2 cut(s) 526, 1037
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 1 cut(s) 969
Bsp1720I GCTNAGC 1 cut(s) 778
Bsp68I TCGCGA 1 cut(s) 80
BspACI CCGC 9 cut(s) 25, 45, 234, 358, 371, 374, 612, 931, 993
BspANI GGCC 7 cut(s) 10, 173, 215, 233, 388, 394, 400
BspDI ATCGAT 1 cut(s) 972
BspEI TCCGGA 2 cut(s) 526, 1037
BspFNI CGCG 5 cut(s) 25, 80, 360, 362, 993
BspHI TCATGA 2 cut(s) 766, 895
BspLI GGNNCC 8 cut(s) 49, 87, 226, 322, 351, 441, 477, 550
BspT104I TTCGAA 1 cut(s) 727
BspT107I GGYRCC 5 cut(s) 47, 85, 224, 320, 475
BspTI CTTAAG 1 cut(s) 934
BsrBI CCGCTC 1 cut(s) 236
BsrFI RCCGGY 2 cut(s) 6, 997
BsrGI TGTACA 1 cut(s) 207
BssAI RCCGGY 2 cut(s) 6, 997
BssECI CCNNGG 5 cut(s) 102, 228, 389, 395, 443
BssMI GATC 1 cut(s) 969
BssNI GRCGYC 2 cut(s) 48, 321
BssSI CACGAG 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 443
Bst2BI CACGAG 1 cut(s) 270
Bst4CI ACNGT 5 cut(s) 85, 317, 414, 486, 656
BstACI GRCGYC 2 cut(s) 48, 321
BstAFI CTTAAG 1 cut(s) 934
BstAPI GCANNNNNTGC 1 cut(s) 959
BstAUI TGTACA 1 cut(s) 207
BstBI TTCGAA 1 cut(s) 727
BstC8I GCNNGC 3 cut(s) 8, 37, 376
BstDEI CTNAG 2 cut(s) 778, 854
BstDSI CCRYGG 1 cut(s) 389
BstF5I GGATG 1 cut(s) 1046
BstFNI CGCG 5 cut(s) 25, 80, 360, 362, 993
BstH2I RGCGCY 2 cut(s) 51, 324
BstHHI GCGC 6 cut(s) 6, 25, 50, 323, 362, 698
BstKTI GATC 1 cut(s) 972
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 1 cut(s) 969
BstMCI CGRYCG 4 cut(s) 11, 401, 466, 972
BstMWI GCNNNNNNNGC 7 cut(s) 45, 128, 233, 368, 693, 959, 1007
BstNSI RCATGY 1 cut(s) 382
BstSCI CCNGG 3 cut(s) 10, 333, 400
BstUI CGCG 5 cut(s) 25, 80, 360, 362, 993
BstV2I GAAGAC 2 cut(s) 596, 920
BstZI CGGCCG 2 cut(s) 8, 398
Bsu15I ATCGAT 1 cut(s) 972
BsuI GTATCC 1 cut(s) 619
BsuRI GGCC 7 cut(s) 10, 173, 215, 233, 388, 394, 400
BsuTUI ATCGAT 1 cut(s) 972
BtgI CCRYGG 1 cut(s) 389
BtgZI GCGATG 1 cut(s) 420
BtsCI GGATG 1 cut(s) 1046
BtuMI TCGCGA 1 cut(s) 80
Cac8I GCNNGC 3 cut(s) 8, 37, 376
CciI TCATGA 2 cut(s) 766, 895
CfoI GCGC 6 cut(s) 6, 25, 50, 323, 362, 698
Cfr10I RCCGGY 2 cut(s) 6, 997
Cfr13I GGNCC 4 cut(s) 152, 266, 350, 995
ClaI ATCGAT 1 cut(s) 972
CpoI CGGWCCG 1 cut(s) 995
CseI GACGC 1 cut(s) 999
Csp6I GTAC 2 cut(s) 208, 925
CspCI CAANNNNNGTGG 2 cut(s) 298, 333
CspI CGGWCCG 1 cut(s) 995
CviAII CATG 6 cut(s) 379, 428, 515, 755, 767, 896
CviQI GTAC 2 cut(s) 208, 925
DdeI CTNAG 2 cut(s) 778, 854
DinI GGCGCC 2 cut(s) 49, 322
DpnI GATC 1 cut(s) 971
DpnII GATC 1 cut(s) 969
DraI TTTAAA 1 cut(s) 708
EaeI YGGCCR 2 cut(s) 8, 398
EagI CGGCCG 2 cut(s) 8, 398
EciI GGCGGA 1 cut(s) 601
Ecl136II GAGCTC 1 cut(s) 573
EclXI CGGCCG 2 cut(s) 8, 398
Eco130I CCWWGG 1 cut(s) 443
Eco24I GRGCYC 1 cut(s) 575
Eco32I GATATC 1 cut(s) 97
Eco47I GGWCC 4 cut(s) 152, 266, 350, 995
Eco52I CGGCCG 2 cut(s) 8, 398
Eco53kI GAGCTC 1 cut(s) 573
EcoICRI GAGCTC 1 cut(s) 573
EcoO109I RGGNCCY 2 cut(s) 152, 350
EcoRV GATATC 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 443
EcoT22I ATGCAT 1 cut(s) 964
EcoT38I GRGCYC 1 cut(s) 575
EgeI GGCGCC 2 cut(s) 49, 322
EheI GGCGCC 2 cut(s) 49, 322
ErhI CCWWGG 1 cut(s) 443
FaeI CATG 6 cut(s) 382, 431, 518, 758, 770, 899
FalI AAGNNNNNCTT 2 cut(s) 905, 937
FaqI GGGAC 1 cut(s) 27
FatI CATG 6 cut(s) 378, 427, 514, 754, 766, 895
FauI CCCGC 2 cut(s) 365, 367
Fnu4HI GCNGC 3 cut(s) 46, 234, 372
FriOI GRGCYC 1 cut(s) 575
Fsp4HI GCNGC 3 cut(s) 46, 234, 372
FspBI CTAG 2 cut(s) 158, 444
GlaI GCGC 6 cut(s) 5, 24, 49, 322, 361, 697
GluI GCNGC 3 cut(s) 46, 234, 372
HaeII RGCGCY 2 cut(s) 51, 324
HaeIII GGCC 7 cut(s) 10, 173, 215, 233, 388, 394, 400
HapII CCGG 8 cut(s) 7, 11, 177, 335, 401, 527, 998, 1038
HgaI GACGC 1 cut(s) 999
HhaI GCGC 6 cut(s) 6, 25, 50, 323, 362, 698
Hin1I GRCGYC 2 cut(s) 48, 321
Hin1II CATG 6 cut(s) 382, 431, 518, 758, 770, 899
Hin6I GCGC 6 cut(s) 4, 23, 48, 321, 360, 696
HinP1I GCGC 6 cut(s) 4, 23, 48, 321, 360, 696
HindIII AAGCTT 1 cut(s) 685
HinfI GANTC 3 cut(s) 519, 674, 1034
HpaII CCGG 8 cut(s) 7, 11, 177, 335, 401, 527, 998, 1038
HphI GGTGA 3 cut(s) 349, 668, 810
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 106, 137
Hpy188III TCNNGA 5 cut(s) 79, 527, 767, 896, 1038
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 2 cut(s) 80, 85
HpyAV CCTTC 3 cut(s) 143, 215, 298
HpyCH4III ACNGT 5 cut(s) 85, 317, 414, 486, 656
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 3 cut(s) 282, 410, 962
HpyF10VI GCNNNNNNNGC 7 cut(s) 45, 128, 233, 368, 693, 959, 1007
HpyF3I CTNAG 2 cut(s) 778, 854
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 2 cut(s) 48, 321
Hsp92II CATG 6 cut(s) 382, 431, 518, 758, 770, 899
HspAI GCGC 6 cut(s) 4, 23, 48, 321, 360, 696
KasI GGCGCC 2 cut(s) 47, 320
Kpn2I TCCGGA 2 cut(s) 526, 1037
KroI GCCGGC 1 cut(s) 6
KroNI GCCGGC 1 cut(s) 8
Kzo9I GATC 1 cut(s) 969
LmnI GCTCC 1 cut(s) 578
LpnPI CCDG 9 cut(s) 20, 24, 190, 348, 414, 540, 584, 843, 1011
LweI GCATC 3 cut(s) 22, 397, 971
MaeI CTAG 2 cut(s) 158, 444
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 274
MalI GATC 1 cut(s) 971
MbiI CCGCTC 1 cut(s) 236
MboI GATC 1 cut(s) 969
MboII GAAGA 7 cut(s) 79, 158, 193, 230, 601, 831, 925
MhlI GDGCHC 1 cut(s) 575
MluCI AATT 4 cut(s) 284, 457, 496, 634
Mly113I GGCGCC 2 cut(s) 48, 321
MlyI GAGTC 2 cut(s) 528, 683
Mph1103I ATGCAT 1 cut(s) 964
MroI TCCGGA 2 cut(s) 526, 1037
MroNI GCCGGC 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 723
MseI TTAA 4 cut(s) 633, 707, 870, 935
MspCI CTTAAG 1 cut(s) 934
MspI CCGG 8 cut(s) 7, 11, 177, 335, 401, 527, 998, 1038
MspR9I CCNGG 3 cut(s) 12, 335, 402
Mva1269I GAATGC 2 cut(s) 513, 964
MvnI CGCG 5 cut(s) 25, 80, 360, 362, 993
MwoI GCNNNNNNNGC 7 cut(s) 45, 128, 233, 368, 693, 959, 1007
NaeI GCCGGC 1 cut(s) 8
NarI GGCGCC 2 cut(s) 48, 321
NciI CCSGG 3 cut(s) 12, 335, 402
NdeII GATC 1 cut(s) 969
NgoMIV GCCGGC 1 cut(s) 6
NlaIII CATG 6 cut(s) 382, 431, 518, 758, 770, 899
NlaIV GGNNCC 8 cut(s) 49, 87, 226, 322, 351, 441, 477, 550
NmeAIII GCCGAG 3 cut(s) 38, 253, 376
NmuCI GTSAC 1 cut(s) 274
NruI TCGCGA 1 cut(s) 80
NsiI ATGCAT 1 cut(s) 964
NspI RCATGY 1 cut(s) 382
NspV TTCGAA 1 cut(s) 727
PagI TCATGA 2 cut(s) 766, 895
PcsI WCGNNNNNNNCGW 3 cut(s) 48, 566, 974
PctI GAATGC 2 cut(s) 513, 964
PdiI GCCGGC 1 cut(s) 8
PdmI GAANNNNTTC 1 cut(s) 723
PfeI GAWTC 1 cut(s) 1034
PkrI GCNGC 3 cut(s) 47, 235, 373
Ple19I CGATCG 1 cut(s) 972
PleI GAGTC 2 cut(s) 527, 682
PluTI GGCGCC 2 cut(s) 51, 324
PpsI GAGTC 2 cut(s) 527, 682
PpuMI RGGWCCY 2 cut(s) 152, 350
Psp124BI GAGCTC 1 cut(s) 575
Psp5II RGGWCCY 2 cut(s) 152, 350
PspN4I GGNNCC 8 cut(s) 49, 87, 226, 322, 351, 441, 477, 550
PspPI GGNCC 4 cut(s) 152, 266, 350, 995
PspPPI RGGWCCY 2 cut(s) 152, 350
PvuI CGATCG 1 cut(s) 972
RruI TCGCGA 1 cut(s) 80
RsaI GTAC 2 cut(s) 209, 926
RsaNI GTAC 2 cut(s) 208, 925
Rsr2I CGGWCCG 1 cut(s) 995
RsrII CGGWCCG 1 cut(s) 995
SacI GAGCTC 1 cut(s) 575
SaqAI TTAA 4 cut(s) 633, 707, 870, 935
SatI GCNGC 3 cut(s) 46, 234, 372
Sau3AI GATC 1 cut(s) 969
Sau96I GGNCC 4 cut(s) 152, 266, 350, 995
SchI GAGTC 2 cut(s) 528, 683
ScrFI CCNGG 3 cut(s) 12, 335, 402
SduI GDGCHC 1 cut(s) 575
SfaNI GCATC 3 cut(s) 22, 397, 971
SfoI GGCGCC 2 cut(s) 49, 322
SfuI TTCGAA 1 cut(s) 727
SinI GGWCC 4 cut(s) 152, 266, 350, 995
SmlI CTYRAG 3 cut(s) 679, 905, 934
SmoI CTYRAG 3 cut(s) 679, 905, 934
Sse9I AATT 4 cut(s) 284, 457, 496, 634
SsiI CCGC 9 cut(s) 25, 45, 234, 358, 371, 374, 612, 931, 993
SspDI GGCGCC 2 cut(s) 47, 320
SspMI CTAG 2 cut(s) 158, 444
SstI GAGCTC 1 cut(s) 575
StyD4I CCNGG 3 cut(s) 10, 333, 400
StyI CCWWGG 1 cut(s) 443
TaaI ACNGT 5 cut(s) 85, 317, 414, 486, 656
TaiI ACGT 1 cut(s) 78
TaqI TCGA 4 cut(s) 30, 569, 727, 972
TaqII GACCGA 1 cut(s) 452
TasI AATT 4 cut(s) 284, 457, 496, 634
TatI WGTACW 1 cut(s) 207
TauI GCSGC 3 cut(s) 48, 236, 374
TfiI GAWTC 1 cut(s) 1034
Tru1I TTAA 4 cut(s) 633, 707, 870, 935
Tru9I TTAA 4 cut(s) 633, 707, 870, 935
TseFI GTSAC 1 cut(s) 274
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 4 cut(s) 186, 732, 884, 912
TspGWI ACGGA 1 cut(s) 799
Vha464I CTTAAG 1 cut(s) 934
VpaK11BI GGWCC 4 cut(s) 152, 266, 350, 995
XapI RAATTY 1 cut(s) 496
XceI RCATGY 1 cut(s) 382
XmaJI CCTAGG 1 cut(s) 443
XmnI GAANNNNTTC 1 cut(s) 723
XspI CTAG 2 cut(s) 158, 444
Zsp2I ATGCAT 1 cut(s) 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.