Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0000611

Physical Location & Seq

Genomic Coordinates Forward (+)

5127994 .. 5131996

Gene Structure 4003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g05260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGAGGACGTAAAGAAGAGAAAGCTCGAAGATGCTTCGGGCAACGATGACGATATCTCAAGAAATTCGGAGGACCACCTTCGCTCCTTGCTCGAACCTCTTGCCAAACCCCAGCTCGTTGATCGATCCTCGCTAAACTGTTCCCAATATCCTTCAATTGCAGAAGAAATTAAGGGTGTTGCTAGTGCAGATCCTGTTCATAGAAAGCTTTTCGTTCGTGGGTTGGCCTGGAACACCTCTTCCGAAACCTTGCGTGCTGCATTTAGTGAGCATGGAGAGATTGAGGAAGGGGCTGTCATCTATGAAAAAGCAAATGGGAAATCGCGTGGCTATGGTTTTATTACTTACAAGCACATGGAGTCTACTCAGTGTGCGCTCAGAGCACCTAGCAAGTTGATTGATGGTCGCCTTGCTGTTTGTAATCTAGCAGCTGAGGGGTTAAGTGGGACACCTGCTACACTTGATCTTACCCAGAGGAAACTCTACATTGGGGGCTTGTCTCCAAATGTCACAAGTGAGATGCTTCTCCACTTTTTTGGCAGGCATGGTGATATAGAAGAAGGTTCAGTTGCATATGATAAAGATTCAAATGAGTCACGTGGGTTTGGCTTTGTTACATACAGGACGGTGGAGGCTGCAAGGAAGGCCATAGATGATCCACAAAAGACCCTTGGGGGGAGAAATATCATTGTGAAGCTTGCAGATTCACACAAGGGCAGAACAGTACAAACACAGCTACCCCCAGCAATGGTTCCGATGGCCTTACCTCTAGCACCGCCTGGATATCCCCAGCCTGGAAAAGCACATGCTGGCACCACCCCTGTGGGTTACGGCTATCCTCAAACTATAGCGGCATACCCCGATTCTTCTTACCCAATTCCTCCCCAACCACCATACCCGGCACAGTCACAAATTCCCTACCCATATTACATTGGCAAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Myb_DNA-binding RRM_1

Protein Analysis

315

Amino Acids

34.23

Weight (kDa)

6.72

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15010 AT3G15010
fragaria_vesca	FvH4_3g07890 FvH4_3g18630 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550
malus_domestica	MD03G1240500.v1.1 MD10G1280800.v1.1 MD11G1259900.v1.1 MD12G1058300.v1.1
prunus_persica	Prupe.4G060300_v2.0.a1 Prupe.4G170100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1
pyrus_communis	pycom12g05260
rosa_chinensis	RchiOBHm_Chr1g0364191 RchiOBHm_Chr3g0480051 RchiOBHm_Chr5g0010701 RchiOBHm_Chr5g0031451
rosa_laevigata	RLG00000023519 RLG00000031772 RLG00000033308
rosa_multiflora	Rmu_co8296297.1_g000001 Rmu_sc0003684.1_g000004 Rmu_sc0006604.1_g000017 Rmu_sc0008864.1_g000013 Rmu_sc0013975.1_g000001 Rmu_sc0021762.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005170 Rroxscaffold_1G00065690 Rroxscaffold_6G00401800
rosa_rugosa	Rorug03G0180200 Rorug03G0180300 Rorug03G0180400 Rorug03G0180500 Rorug04G0451600 Rorug04G0451700 Rorug05G0125900
rosa_samantha	Rh1AG051900 Rh1AG321800 Rh1CG005400 Rh1CG301300 Rh1DG000800 Rh3AG231300 Rh3BG263700 Rh3CG261200 Rh3DG257100 Rh3DG316100 Rh4AG036900 Rh4AG037000 Rh4BG212900 Rh4BG213000 Rh4CG196500 Rh4DG300800 Rh4DG300900 Rh4DG301000 Rh5AG083400 Rh5AG218600 Rh5BG078600 Rh5BG218000 Rh5CG091400 Rh5CG241600 Rh5DG078800 Rh5DG223200 Rh7BG406600 Rh7DG422300
rosa_wichuraiana	Rw0G000640 Rw0G022340 Rw1G003330 Rw3G020470 Rw3G020800 Rw5G019360 Rw5G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	460
Acc36I	ACCTGC	1 cut(s)	460
AccB1I	GGYRCC	1 cut(s)	812
AccI	GTMKAC	1 cut(s)	362
AccII	CGCG	1 cut(s)	325
AciI	CCGC	2 cut(s)	776, 851
AclWI	GGATC	3 cut(s)	120, 185, 650
AcsI	RAATTY	2 cut(s)	64, 912
AcvI	CACGTG	1 cut(s)	599
AfaI	GTAC	1 cut(s)	726
AfiI	CCNNNNNNNGG	3 cut(s)	675, 748, 794
AgsI	TTSAA	2 cut(s)	156, 588
AjnI	CCWGG	3 cut(s)	227, 778, 793
AleI	CACNNNNGTG	1 cut(s)	821
AloI	GAACNNNNNNTCC	2 cut(s)	224, 256
AluBI	AGCT	6 cut(s)	25, 115, 208, 431, 697, 736
AluI	AGCT	6 cut(s)	25, 115, 208, 431, 697, 736
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	1 cut(s)	504
AlwI	GGATC	3 cut(s)	120, 185, 650
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	3 cut(s)	225, 645, 759
ApeKI	GCWGC	3 cut(s)	257, 428, 635
ApoI	RAATTY	2 cut(s)	64, 912
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	1 cut(s)	73
AsuC2I	CCSGG	1 cut(s)	899
AsuHPI	GGTGA	1 cut(s)	560
AvaII	GGWCC	1 cut(s)	73
BanI	GGYRCC	1 cut(s)	812
BbrPI	CACGTG	1 cut(s)	599
Bbv12I	GWGCWC	1 cut(s)	385
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	3 cut(s)	244, 440, 622
BccI	CCATC	2 cut(s)	395, 751
BceAI	ACGGC	1 cut(s)	847
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BciT130I	CCWGG	3 cut(s)	229, 780, 795
BcnI	CCSGG	1 cut(s)	899
BcoDI	GTCTC	1 cut(s)	504
BfaI	CTAG	4 cut(s)	183, 387, 425, 770
BfmI	CTRYAG	1 cut(s)	846
BfuAI	ACCTGC	1 cut(s)	460
BisI	GCNGC	4 cut(s)	258, 429, 636, 852
BlsI	GCNGC	4 cut(s)	259, 430, 637, 853
Bme1390I	CCNGG	4 cut(s)	229, 780, 795, 899
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	2 cut(s)	753, 814
BmrFI	CCNGG	4 cut(s)	229, 780, 795, 899
BmsI	GCATC	2 cut(s)	22, 510
Bpu10I	CCTNAGC	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	43
BpuMI	CCSGG	1 cut(s)	899
Bsa29I	ATCGAT	1 cut(s)	124
BsaAI	YACGTR	1 cut(s)	599
BsaJI	CCNNGG	1 cut(s)	670
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	3 cut(s)	675, 748, 794
Bse3DI	GCAATG	1 cut(s)	753
BseBI	CCWGG	3 cut(s)	229, 780, 795
BseCI	ATCGAT	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	670
BseLI	CCNNNNNNNGG	3 cut(s)	675, 748, 794
BseMI	GCAATG	1 cut(s)	753
BseMII	CTCAG	3 cut(s)	380, 391, 423
BseXI	GCAGC	3 cut(s)	244, 440, 622
BseYI	CCCAGC	3 cut(s)	111, 742, 789
BsgI	GTGCAG	1 cut(s)	207
Bsh1236I	CGCG	1 cut(s)	325
BshFI	GGCC	3 cut(s)	227, 647, 761
BshNI	GGYRCC	1 cut(s)	812
BshVI	ATCGAT	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	899
BslFI	GGGAC	1 cut(s)	460
BslI	CCNNNNNNNGG	3 cut(s)	675, 748, 794
BsmAI	GTCTC	1 cut(s)	504
BsmFI	GGGAC	1 cut(s)	460
BsnI	GGCC	3 cut(s)	227, 647, 761
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp143I	GATC	5 cut(s)	121, 125, 190, 463, 655
BspACI	CCGC	2 cut(s)	776, 851
BspANI	GGCC	3 cut(s)	227, 647, 761
BspCNI	CTCAG	3 cut(s)	379, 390, 424
BspDI	ATCGAT	1 cut(s)	124
BspFNI	CGCG	1 cut(s)	325
BspLI	GGNNCC	2 cut(s)	753, 814
BspMI	ACCTGC	1 cut(s)	460
BspPI	GGATC	3 cut(s)	120, 185, 650
BspT107I	GGYRCC	1 cut(s)	812
BsrDI	GCAATG	1 cut(s)	753
BssECI	CCNNGG	1 cut(s)	670
BssMI	GATC	5 cut(s)	121, 125, 190, 463, 655
BssT1I	CCWWGG	1 cut(s)	670
Bst2UI	CCWGG	3 cut(s)	229, 780, 795
Bst4CI	ACNGT	4 cut(s)	140, 628, 724, 906
Bst6I	CTCTTC	2 cut(s)	11, 244
BstBAI	YACGTR	1 cut(s)	599
BstC8I	GCNNGC	4 cut(s)	255, 542, 699, 811
BstDEI	CTNAG	3 cut(s)	366, 377, 432
BstFNI	CGCG	1 cut(s)	325
BstHHI	GCGC	1 cut(s)	376
BstKTI	GATC	5 cut(s)	124, 128, 193, 466, 658
BstMAI	GTCTC	1 cut(s)	504
BstMBI	GATC	5 cut(s)	121, 125, 190, 463, 655
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 644
BstNI	CCWGG	3 cut(s)	229, 780, 795
BstNSI	RCATGY	1 cut(s)	809
BstSCI	CCNGG	4 cut(s)	227, 778, 793, 897
BstSFI	CTRYAG	1 cut(s)	846
BstUI	CGCG	1 cut(s)	325
BstV1I	GCAGC	3 cut(s)	244, 440, 622
BstX2I	RGATCY	1 cut(s)	190
BstXI	CCANNNNNNTGG	2 cut(s)	536, 823
BstYI	RGATCY	1 cut(s)	190
Bsu15I	ATCGAT	1 cut(s)	124
BsuRI	GGCC	3 cut(s)	227, 647, 761
BsuTUI	ATCGAT	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	374
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	4 cut(s)	255, 542, 699, 811
CaiI	CAGNNNCTG	1 cut(s)	194
CfoI	GCGC	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	73
ClaI	ATCGAT	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	725
CviAII	CATG	4 cut(s)	272, 355, 545, 806
CviQI	GTAC	1 cut(s)	725
DdeI	CTNAG	3 cut(s)	366, 377, 432
DpnI	GATC	5 cut(s)	123, 127, 192, 465, 657
DpnII	GATC	5 cut(s)	121, 125, 190, 463, 655
Eam1104I	CTCTTC	2 cut(s)	11, 244
EarI	CTCTTC	2 cut(s)	11, 244
Eco130I	CCWWGG	1 cut(s)	670
Eco32I	GATATC	2 cut(s)	55, 785
Eco47I	GGWCC	1 cut(s)	73
Eco72I	CACGTG	1 cut(s)	599
EcoRII	CCWGG	3 cut(s)	227, 778, 793
EcoRV	GATATC	2 cut(s)	55, 785
EcoT14I	CCWWGG	1 cut(s)	670
ErhI	CCWWGG	1 cut(s)	670
FaeI	CATG	4 cut(s)	275, 358, 548, 809
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	4 cut(s)	271, 354, 544, 805
FauNDI	CATATG	1 cut(s)	574
FblI	GTMKAC	1 cut(s)	362
Fnu4HI	GCNGC	4 cut(s)	258, 429, 636, 852
Fsp4HI	GCNGC	4 cut(s)	258, 429, 636, 852
FspBI	CTAG	4 cut(s)	183, 387, 425, 770
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	4 cut(s)	258, 429, 636, 852
GsaI	CCCAGC	3 cut(s)	115, 746, 793
HaeIII	GGCC	3 cut(s)	227, 647, 761
HapII	CCGG	1 cut(s)	899
HhaI	GCGC	1 cut(s)	376
Hin1II	CATG	4 cut(s)	275, 358, 548, 809
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HindIII	AAGCTT	2 cut(s)	206, 695
HinfI	GANTC	5 cut(s)	359, 584, 593, 704, 863
HpaII	CCGG	1 cut(s)	899
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	4 cut(s)	70, 244, 380, 756
Hpy188III	TCNNGA	1 cut(s)	60
Hpy8I	GTNNAC	1 cut(s)	363
HpyAV	CCTTC	5 cut(s)	89, 162, 281, 554, 637
HpyCH4III	ACNGT	4 cut(s)	140, 628, 724, 906
HpyCH4IV	ACGT	2 cut(s)	9, 598
HpyCH4V	TGCA	6 cut(s)	161, 188, 260, 572, 638, 701
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 644
HpyF3I	CTNAG	3 cut(s)	366, 377, 432
HpySE526I	ACGT	2 cut(s)	9, 598
Hsp92II	CATG	4 cut(s)	275, 358, 548, 809
HspAI	GCGC	1 cut(s)	374
Kzo9I	GATC	5 cut(s)	121, 125, 190, 463, 655
LmnI	GCTCC	1 cut(s)	89
Lsp1109I	GCAGC	3 cut(s)	244, 440, 622
LweI	GCATC	2 cut(s)	22, 510
MaeI	CTAG	4 cut(s)	183, 387, 425, 770
MaeII	ACGT	2 cut(s)	9, 598
MaeIII	GTNAC	5 cut(s)	508, 594, 613, 827, 906
MalI	GATC	5 cut(s)	123, 127, 192, 465, 657
MboI	GATC	5 cut(s)	121, 125, 190, 463, 655
MboII	GAAGA	6 cut(s)	28, 41, 176, 231, 569, 858
MfeI	CAATTG	1 cut(s)	156
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	385
MluCI	AATT	5 cut(s)	64, 156, 168, 876, 912
MlyI	GAGTC	2 cut(s)	368, 602
MseI	TTAA	2 cut(s)	171, 440
MslI	CAYNNNNRTG	1 cut(s)	821
MspA1I	CMGCKG	1 cut(s)	431
MspI	CCGG	1 cut(s)	899
MspR9I	CCNGG	4 cut(s)	229, 780, 795, 899
MunI	CAATTG	1 cut(s)	156
MvaI	CCWGG	3 cut(s)	229, 780, 795
MvnI	CGCG	1 cut(s)	325
MwoI	GCNNNNNNNGC	2 cut(s)	380, 644
NciI	CCSGG	1 cut(s)	899
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	5 cut(s)	121, 125, 190, 463, 655
NlaIII	CATG	4 cut(s)	275, 358, 548, 809
NlaIV	GGNNCC	2 cut(s)	753, 814
NmuCI	GTSAC	3 cut(s)	508, 594, 906
NspI	RCATGY	1 cut(s)	809
OliI	CACNNNNGTG	1 cut(s)	821
PaqCI	CACCTGC	1 cut(s)	460
PfeI	GAWTC	3 cut(s)	584, 704, 863
PkrI	GCNGC	4 cut(s)	259, 430, 637, 853
PleI	GAGTC	2 cut(s)	367, 601
PmaCI	CACGTG	1 cut(s)	599
PmlI	CACGTG	1 cut(s)	599
PpsI	GAGTC	2 cut(s)	367, 601
Ppu21I	YACGTR	1 cut(s)	599
Psp6I	CCWGG	3 cut(s)	227, 778, 793
PspCI	CACGTG	1 cut(s)	599
PspFI	CCCAGC	3 cut(s)	111, 742, 789
PspGI	CCWGG	3 cut(s)	227, 778, 793
PspN4I	GGNNCC	2 cut(s)	753, 814
PspPI	GGNCC	1 cut(s)	73
PstNI	CAGNNNCTG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	1 cut(s)	726
RsaNI	GTAC	1 cut(s)	725
RseI	CAYNNNNRTG	1 cut(s)	821
SaqAI	TTAA	2 cut(s)	171, 440
SatI	GCNGC	4 cut(s)	258, 429, 636, 852
Sau3AI	GATC	5 cut(s)	121, 125, 190, 463, 655
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	2 cut(s)	368, 602
ScrFI	CCNGG	4 cut(s)	229, 780, 795, 899
SduI	GDGCHC	1 cut(s)	385
SfaNI	GCATC	2 cut(s)	22, 510
SfcI	CTRYAG	1 cut(s)	846
SinI	GGWCC	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	821
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	5 cut(s)	64, 156, 168, 876, 912
SsiI	CCGC	2 cut(s)	776, 851
SspMI	CTAG	4 cut(s)	183, 387, 425, 770
StyD4I	CCNGG	4 cut(s)	227, 778, 793, 897
StyI	CCWWGG	1 cut(s)	670
TaaI	ACNGT	4 cut(s)	140, 628, 724, 906
TaiI	ACGT	2 cut(s)	12, 601
TaqI	TCGA	3 cut(s)	27, 93, 124
TasI	AATT	5 cut(s)	64, 156, 168, 876, 912
TatI	WGTACW	1 cut(s)	724
TauI	GCSGC	1 cut(s)	854
TfiI	GAWTC	3 cut(s)	584, 704, 863
Tru1I	TTAA	2 cut(s)	171, 440
Tru9I	TTAA	2 cut(s)	171, 440
TscAI	CASTG	1 cut(s)	374
TseFI	GTSAC	3 cut(s)	508, 594, 906
TseI	GCWGC	3 cut(s)	257, 428, 635
Tsp45I	GTSAC	3 cut(s)	508, 594, 906
TspDTI	ATGAA	2 cut(s)	188, 318
TspRI	CASTG	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	73
XapI	RAATTY	2 cut(s)	64, 912
XceI	RCATGY	1 cut(s)	809
XmiI	GTMKAC	1 cut(s)	362
XspI	CTAG	4 cut(s)	183, 387, 425, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.