Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021762.1

Orthogroup ID

OG0000611

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 583

Gene Structure 583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021762.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 490 bp

caagcacgccgacgaagccctaattgcgctcaaggaaccgagcaagaagatcgacggcagagtcaccgtcacgcagtacgctgccgccggacattcggcgccgttcagtagcagcaacggcggcgccgatgtctcggcgaggaagatttacgtcgggacggtgccgtttgatatctcctcggagagattgttgtctgcgttttcggctttcggagagattgaagaaggtcctctagggtttgatgaggccaccggaaaatcaaagggctttgcattcttcgtgtacaagaccgaagaaggtgccagggccgctctcattgagcctttgaaaaacattgatggtcctctaggatttgataaggccaccggaaaatcaaagggctttacattcttcgtgtacaagaccgaagaaggtgccagggccgctctcattgagcctttgaaaaacattgatggtcatcatgtgacttggcaaattagctgtggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

162

Amino Acids

17.27

Weight (kDa)

6.11

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15010 AT3G15010
fragaria_vesca	FvH4_3g07890 FvH4_3g18630 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550
malus_domestica	MD03G1240500.v1.1 MD10G1280800.v1.1 MD11G1259900.v1.1 MD12G1058300.v1.1
prunus_persica	Prupe.4G060300_v2.0.a1 Prupe.4G170100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1
pyrus_communis	pycom12g05260
rosa_chinensis	RchiOBHm_Chr1g0364191 RchiOBHm_Chr3g0480051 RchiOBHm_Chr5g0010701 RchiOBHm_Chr5g0031451
rosa_laevigata	RLG00000023519 RLG00000031772 RLG00000033308
rosa_multiflora	Rmu_co8296297.1_g000001 Rmu_sc0003684.1_g000004 Rmu_sc0006604.1_g000017 Rmu_sc0008864.1_g000013 Rmu_sc0013975.1_g000001 Rmu_sc0021762.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005170 Rroxscaffold_1G00065690 Rroxscaffold_6G00401800
rosa_rugosa	Rorug03G0180200 Rorug03G0180300 Rorug03G0180400 Rorug03G0180500 Rorug04G0451600 Rorug04G0451700 Rorug05G0125900
rosa_samantha	Rh1AG051900 Rh1AG321800 Rh1CG005400 Rh1CG301300 Rh1DG000800 Rh3AG231300 Rh3BG263700 Rh3CG261200 Rh3DG257100 Rh3DG316100 Rh4AG036900 Rh4AG037000 Rh4BG212900 Rh4BG213000 Rh4CG196500 Rh4DG300800 Rh4DG300900 Rh4DG301000 Rh5AG083400 Rh5AG218600 Rh5BG078600 Rh5BG218000 Rh5CG091400 Rh5CG241600 Rh5DG078800 Rh5DG223200 Rh7BG406600 Rh7DG422300
rosa_wichuraiana	Rw0G000640 Rw0G022340 Rw1G003330 Rw3G020470 Rw3G020800 Rw5G019360 Rw5G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	60
AccB1I	GGYRCC	5 cut(s)	98, 123, 161, 300, 414
AccBSI	CCGCTC	2 cut(s)	312, 426
AciI	CCGC	4 cut(s)	85, 121, 310, 424
AcyI	GRCGYC	2 cut(s)	99, 124
AfaI	GTAC	3 cut(s)	78, 285, 399
AgsI	TTSAA	3 cut(s)	222, 329, 443
AjnI	CCWGG	2 cut(s)	303, 417
AluBI	AGCT	1 cut(s)	481
AluI	AGCT	1 cut(s)	481
Alw26I	GTCTC	1 cut(s)	137
AoxI	GGCC	4 cut(s)	247, 307, 361, 421
ApeKI	GCWGC	2 cut(s)	81, 112
AspLEI	GCGC	3 cut(s)	29, 101, 126
AspS9I	GGNCC	4 cut(s)	228, 307, 342, 421
AsuHPI	GGTGA	1 cut(s)	56
AvaII	GGWCC	2 cut(s)	228, 342
BanI	GGYRCC	5 cut(s)	98, 123, 161, 300, 414
BbvI	GCAGC	2 cut(s)	68, 124
BccI	CCATC	2 cut(s)	333, 447
BceAI	ACGGC	4 cut(s)	71, 86, 134, 149
BcgI	CGANNNNNNTGC	6 cut(s)	32, 66, 282, 316, 396, 430
BciT130I	CCWGG	2 cut(s)	305, 419
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	2 cut(s)	234, 348
BfoI	RGCGCY	2 cut(s)	102, 127
BisI	GCNGC	6 cut(s)	82, 85, 113, 122, 310, 424
BlsI	GCNGC	6 cut(s)	83, 86, 114, 123, 311, 425
Bme1390I	CCNGG	2 cut(s)	305, 419
Bme18I	GGWCC	2 cut(s)	228, 342
BmgT120I	GGNCC	4 cut(s)	228, 307, 342, 421
BmiI	GGNNCC	6 cut(s)	37, 100, 125, 163, 302, 416
BmrFI	CCNGG	2 cut(s)	305, 419
BpuEI	CTTGAG	1 cut(s)	15
BsaBI	GATNNNNATC	1 cut(s)	457
BsaHI	GRCGYC	2 cut(s)	99, 124
BsaJI	CCNNGG	3 cut(s)	178, 304, 418
BsaWI	WCCGGW	2 cut(s)	252, 366
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bse8I	GATNNNNATC	1 cut(s)	457
BseBI	CCWGG	2 cut(s)	305, 419
BseDI	CCNNGG	3 cut(s)	178, 304, 418
BseJI	GATNNNNATC	1 cut(s)	457
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	2 cut(s)	68, 124
BshFI	GGCC	4 cut(s)	249, 309, 363, 423
BshNI	GGYRCC	5 cut(s)	98, 123, 161, 300, 414
BsiSI	CCGG	3 cut(s)	88, 253, 367
BslFI	GGGAC	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	273
BsnI	GGCC	4 cut(s)	249, 309, 363, 423
Bsp1407I	TGTACA	2 cut(s)	283, 397
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	4 cut(s)	85, 121, 310, 424
BspANI	GGCC	4 cut(s)	249, 309, 363, 423
BspLI	GGNNCC	6 cut(s)	37, 100, 125, 163, 302, 416
BspT107I	GGYRCC	5 cut(s)	98, 123, 161, 300, 414
BsrBI	CCGCTC	2 cut(s)	312, 426
BsrGI	TGTACA	2 cut(s)	283, 397
BssECI	CCNNGG	3 cut(s)	178, 304, 418
BssMI	GATC	1 cut(s)	49
BssNI	GRCGYC	2 cut(s)	99, 124
Bst2UI	CCWGG	2 cut(s)	305, 419
Bst4CI	ACNGT	2 cut(s)	68, 161
BstACI	GRCGYC	2 cut(s)	99, 124
BstAUI	TGTACA	2 cut(s)	283, 397
BstC8I	GCNNGC	1 cut(s)	7
BstH2I	RGCGCY	2 cut(s)	102, 127
BstHHI	GCGC	3 cut(s)	29, 101, 126
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	7 cut(s)	15, 24, 118, 121, 204, 309, 423
BstNI	CCWGG	2 cut(s)	305, 419
BstSCI	CCNGG	2 cut(s)	303, 417
BstV1I	GCAGC	2 cut(s)	68, 124
BsuRI	GGCC	4 cut(s)	249, 309, 363, 423
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	3 cut(s)	29, 101, 126
Cfr13I	GGNCC	4 cut(s)	228, 307, 342, 421
Csp6I	GTAC	3 cut(s)	77, 284, 398
CviAII	CATG	1 cut(s)	462
CviQI	GTAC	3 cut(s)	77, 284, 398
DinI	GGCGCC	2 cut(s)	100, 125
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
DrdI	GACNNNNNNGTC	1 cut(s)	60
DseDI	GACNNNNNNGTC	1 cut(s)	60
Eco32I	GATATC	1 cut(s)	173
Eco47I	GGWCC	2 cut(s)	228, 342
EcoO109I	RGGNCCY	1 cut(s)	228
EcoRII	CCWGG	2 cut(s)	303, 417
EcoRV	GATATC	1 cut(s)	173
EgeI	GGCGCC	2 cut(s)	100, 125
EheI	GGCGCC	2 cut(s)	100, 125
FaeI	CATG	1 cut(s)	465
FaiI	YATR	1 cut(s)	463
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	1 cut(s)	461
Fnu4HI	GCNGC	6 cut(s)	82, 85, 113, 122, 310, 424
Fsp4HI	GCNGC	6 cut(s)	82, 85, 113, 122, 310, 424
FspBI	CTAG	2 cut(s)	234, 348
GlaI	GCGC	3 cut(s)	28, 100, 125
GluI	GCNGC	6 cut(s)	82, 85, 113, 122, 310, 424
HaeII	RGCGCY	2 cut(s)	102, 127
HaeIII	GGCC	4 cut(s)	249, 309, 363, 423
HapII	CCGG	3 cut(s)	88, 253, 367
HhaI	GCGC	3 cut(s)	29, 101, 126
Hin1I	GRCGYC	2 cut(s)	99, 124
Hin1II	CATG	1 cut(s)	465
Hin6I	GCGC	3 cut(s)	27, 99, 124
HinP1I	GCGC	3 cut(s)	27, 99, 124
HinfI	GANTC	1 cut(s)	61
HpaII	CCGG	3 cut(s)	88, 253, 367
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	2 cut(s)	284, 398
Hpy188I	TCNGA	2 cut(s)	182, 213
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	2 cut(s)	284, 398
Hpy99I	CGWCG	3 cut(s)	15, 57, 156
HpyAV	CCTTC	3 cut(s)	219, 291, 405
HpyCH4III	ACNGT	2 cut(s)	68, 161
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	1 cut(s)	273
HpyF10VI	GCNNNNNNNGC	7 cut(s)	15, 24, 118, 121, 204, 309, 423
HpySE526I	ACGT	1 cut(s)	151
Hsp92I	GRCGYC	2 cut(s)	99, 124
Hsp92II	CATG	1 cut(s)	465
HspAI	GCGC	3 cut(s)	27, 99, 124
KasI	GGCGCC	2 cut(s)	98, 123
Kzo9I	GATC	1 cut(s)	49
LpnPI	CCDG	7 cut(s)	101, 266, 290, 317, 380, 404, 431
Lsp1109I	GCAGC	2 cut(s)	68, 124
MaeI	CTAG	2 cut(s)	234, 348
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	3 cut(s)	62, 68, 464
MalI	GATC	1 cut(s)	51
MbiI	CCGCTC	2 cut(s)	312, 426
MboI	GATC	1 cut(s)	49
MboII	GAAGA	7 cut(s)	59, 155, 234, 269, 306, 383, 420
MluCI	AATT	2 cut(s)	22, 475
Mly113I	GGCGCC	2 cut(s)	99, 124
MlyI	GAGTC	1 cut(s)	70
MnlI	CCTC	5 cut(s)	133, 188, 239, 241, 355
MspI	CCGG	3 cut(s)	88, 253, 367
MspR9I	CCNGG	2 cut(s)	305, 419
Mva1269I	GAATGC	1 cut(s)	273
MvaI	CCWGG	2 cut(s)	305, 419
MwoI	GCNNNNNNNGC	7 cut(s)	15, 24, 118, 121, 204, 309, 423
NarI	GGCGCC	2 cut(s)	99, 124
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	465
NlaIV	GGNNCC	6 cut(s)	37, 100, 125, 163, 302, 416
NmeAIII	GCCGAG	1 cut(s)	114
NmuCI	GTSAC	3 cut(s)	62, 68, 464
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PctI	GAATGC	1 cut(s)	273
PkrI	GCNGC	6 cut(s)	83, 86, 114, 123, 311, 425
PleI	GAGTC	1 cut(s)	69
PluTI	GGCGCC	2 cut(s)	102, 127
PpsI	GAGTC	1 cut(s)	69
PpuMI	RGGWCCY	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	303, 417
PspGI	CCWGG	2 cut(s)	303, 417
PspN4I	GGNNCC	6 cut(s)	37, 100, 125, 163, 302, 416
PspPI	GGNCC	4 cut(s)	228, 307, 342, 421
PspPPI	RGGWCCY	1 cut(s)	228
RsaI	GTAC	3 cut(s)	78, 285, 399
RsaNI	GTAC	3 cut(s)	77, 284, 398
SatI	GCNGC	6 cut(s)	82, 85, 113, 122, 310, 424
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	4 cut(s)	228, 307, 342, 421
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	2 cut(s)	305, 419
SetI	ASST	5 cut(s)	154, 230, 302, 416, 483
SfoI	GGCGCC	2 cut(s)	100, 125
SinI	GGWCC	2 cut(s)	228, 342
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
Sse9I	AATT	2 cut(s)	22, 475
SsiI	CCGC	4 cut(s)	85, 121, 310, 424
SspDI	GGCGCC	2 cut(s)	98, 123
SspMI	CTAG	2 cut(s)	234, 348
StyD4I	CCNGG	2 cut(s)	303, 417
TaaI	ACNGT	2 cut(s)	68, 161
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	1 cut(s)	52
TaqII	GACCGA	2 cut(s)	306, 420
TasI	AATT	2 cut(s)	22, 475
TatI	WGTACW	2 cut(s)	283, 397
TauI	GCSGC	4 cut(s)	87, 124, 312, 426
TseFI	GTSAC	3 cut(s)	62, 68, 464
TseI	GCWGC	2 cut(s)	81, 112
Tsp45I	GTSAC	3 cut(s)	62, 68, 464
VpaK11BI	GGWCC	2 cut(s)	228, 342
XspI	CTAG	2 cut(s)	234, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.