Rw1G003330

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000611
Physical Location & Seq
Reverse (-)
6142198 .. 6143266
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G003330.1

Sequence Viewer

Length: 1038 bp
ATGGACTTCACAAAGAAGCGGAAGACGGACGAGAACGGCGACGTTTCGACTGCCCCGCCTTCCCAATTAACAACCCTAACCCCCGACGACTTCCGCAAACTCCTCCAGCCCATGTCCCACGACCACCTCGTCGAAATCCTCGAAAACGCCGTCGTTCGCCACCCCGACGTCCTCGAATCCCTCCGCCACCTCACCAACCGTGACCTCACCCTCCGCAAGCTCTTCGTCCGTGGCCTCGGCGGCGACACCACCACCGATTCGCTCCGCTCCGTCTTCTCCGCCTTCGGCGACCTCGACGAGGCGATCGTCATCTTCGACAAGGCCACCGGAAAATCCAAGGGCTACGGATTCGTCACCTTCAAGCACGCCGACGAAGCCCTAATTGCGCTCAAGGAACCGAGCAAGAAGATCGACGGCAGAGTCACCGTCACGCAGTACGCCGCCGCCGGACATTCGGCGCCGTTCAGTACCAGCAACGGCGGCGCCGATGTCTCGGCGAGGAAGATTTACGTCGGGACGGTGCCGTTTGATATCTCCTCGGAGAGATTGTTGTCTGCGTTTTCGGCTTTCGGAGAGATTGAAGAAGGTCCTCTAGGGTTTGATGAGGCCACCGGAAAATCAAAGGGCTTTGCATTCTTAGTGTACAAGACCGAAGAAGGTGCCAGGGCCGCTCTCATTGAGCCTTTGAAAAACATTGATGGTCATCATAAGGGCAAACACGGTGGCGCCCAAGCCCCTCCCGGTGATATTTCCGGGGTCCCTCCACCGCAGCAAATGCAGCCGGGCATGTTTAGGCCACAGCCTCAGCCCGGGCAGTACCCGGTTTTTGCTGGTGGGCATGCGCCAGTGGTTCCTAGGTATAATACTAATTTCAGTCACTATGGGGTGCCTCCACAGTTGCCTCCAACTTCGGTAGGAATGCCTCATGGAGTCTATCCAGACAGTTCGCGGTATGGGGTTCCTCCACCACAGCATCATCAGGCTCCCTCAATGCCAAGAGGACCACCTGGGGGAATGTATCCGCCACCTTACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

345

Amino Acids

37.26

Weight (kDa)

6.93

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 74 - 141 9.9e-15 RNA recognition motif
RRM_7 PF16367 167 - 225 1.9e-06 RNA recognition motif
RRM_1 PF00076 169 - 225 2.7e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 128, 419
AatII GACGTC 1 cut(s) 171
AccB1I GGYRCC 6 cut(s) 457, 482, 520, 659, 725, 886
AccBSI CCGCTC 2 cut(s) 267, 671
AccII CGCG 1 cut(s) 949
AcyI GRCGYC 4 cut(s) 168, 458, 483, 726
AfaI GTAC 4 cut(s) 437, 469, 644, 818
AfiI CCNNNNNNNGG 3 cut(s) 298, 809, 1010
AgsI TTSAA 3 cut(s) 361, 581, 688
AjnI CCWGG 2 cut(s) 662, 1006
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 496
Ama87I CYCGRG 1 cut(s) 809
AoxI GGCC 5 cut(s) 232, 321, 606, 666, 794
ApeKI GCWGC 2 cut(s) 769, 778
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
AspA2I CCTAGG 1 cut(s) 854
AspLEI GCGC 5 cut(s) 388, 460, 485, 728, 844
AspS9I GGNCC 4 cut(s) 587, 666, 757, 1001
AsuC2I CCSGG 6 cut(s) 741, 754, 783, 810, 811, 821
AsuHPI GGTGA 5 cut(s) 184, 199, 346, 415, 755
AvaI CYCGRG 1 cut(s) 809
AvaII GGWCC 3 cut(s) 587, 757, 1001
AvrII CCTAGG 1 cut(s) 854
BanI GGYRCC 6 cut(s) 457, 482, 520, 659, 725, 886
BbsI GAAGAC 2 cut(s) 29, 265
BbvCI CCTCAGC 1 cut(s) 804
BbvI GCAGC 2 cut(s) 781, 790
BccI CCATC 1 cut(s) 692
BceAI ACGGC 6 cut(s) 52, 134, 430, 445, 493, 508
BcgI CGANNNNNNTGC 6 cut(s) 205, 239, 391, 425, 641, 675
BciT130I CCWGG 2 cut(s) 664, 1008
BciVI GTATCC 1 cut(s) 1029
BcnI CCSGG 6 cut(s) 741, 754, 783, 810, 811, 821
BcoDI GTCTC 1 cut(s) 496
BfaI CTAG 2 cut(s) 593, 855
BfoI RGCGCY 3 cut(s) 461, 486, 729
BfuI GTATCC 1 cut(s) 1029
BglI GCCNNNNNGGC 1 cut(s) 240
BisI GCNGC 7 cut(s) 241, 441, 444, 481, 669, 770, 779
BlnI CCTAGG 1 cut(s) 854
BlsI GCNGC 7 cut(s) 242, 442, 445, 482, 670, 771, 780
Bme1390I CCNGG 8 cut(s) 664, 741, 754, 783, 810, 811, 821, 1008
Bme18I GGWCC 3 cut(s) 587, 757, 1001
BmeT110I CYCGRG 1 cut(s) 809
BmgT120I GGNCC 4 cut(s) 587, 666, 757, 1001
BmrFI CCNGG 8 cut(s) 664, 741, 754, 783, 810, 811, 821, 1008
BmsI GCATC 1 cut(s) 982
BpiI GAAGAC 2 cut(s) 29, 265
BpmI CTGGAG 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 804
BpuEI CTTGAG 1 cut(s) 374
BpuMI CCSGG 6 cut(s) 741, 754, 783, 810, 811, 821
BsaBI GATNNNNATC 2 cut(s) 308, 702
BsaHI GRCGYC 4 cut(s) 168, 458, 483, 726
BsaJI CCNNGG 9 cut(s) 229, 235, 336, 537, 663, 753, 809, 854, 1007
BsaWI WCCGGW 2 cut(s) 326, 611
BsaXI ACNNNNNCTCC 2 cut(s) 533, 563
Bsc4I CCNNNNNNNGG 3 cut(s) 298, 809, 1010
Bse1I ACTGG 1 cut(s) 845
Bse8I GATNNNNATC 2 cut(s) 308, 702
BseBI CCWGG 2 cut(s) 664, 1008
BseDI CCNNGG 9 cut(s) 229, 235, 336, 537, 663, 753, 809, 854, 1007
BseJI GATNNNNATC 2 cut(s) 308, 702
BseLI CCNNNNNNNGG 3 cut(s) 298, 809, 1010
BseMII CTCAG 1 cut(s) 818
BseNI ACTGG 1 cut(s) 845
BseRI GAGGAG 2 cut(s) 92, 526
BseXI GCAGC 2 cut(s) 781, 790
Bsh1236I CGCG 1 cut(s) 949
Bsh1285I CGRYCG 1 cut(s) 306
BshFI GGCC 5 cut(s) 234, 323, 608, 668, 796
BshNI GGYRCC 6 cut(s) 457, 482, 520, 659, 725, 886
BsiEI CGRYCG 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 809
BsiSI CCGG 8 cut(s) 327, 447, 612, 741, 753, 782, 810, 821
BslFI GGGAC 3 cut(s) 100, 529, 743
BslI CCNNNNNNNGG 3 cut(s) 298, 809, 1010
BsmAI GTCTC 1 cut(s) 496
BsmFI GGGAC 3 cut(s) 100, 529, 743
BsmI GAATGC 2 cut(s) 632, 924
BsnI GGCC 5 cut(s) 234, 323, 608, 668, 796
BsoBI CYCGRG 1 cut(s) 809
Bsp1407I TGTACA 1 cut(s) 642
Bsp143I GATC 2 cut(s) 303, 408
BspANI GGCC 5 cut(s) 234, 323, 608, 668, 796
BspCNI CTCAG 1 cut(s) 817
BspFNI CGCG 1 cut(s) 949
BspQI GCTCTTC 1 cut(s) 227
BspT107I GGYRCC 6 cut(s) 457, 482, 520, 659, 725, 886
BsrBI CCGCTC 2 cut(s) 267, 671
BsrGI TGTACA 1 cut(s) 642
BsrI ACTGG 1 cut(s) 845
BssECI CCNNGG 9 cut(s) 229, 235, 336, 537, 663, 753, 809, 854, 1007
BssMI GATC 2 cut(s) 303, 408
BssNI GRCGYC 4 cut(s) 168, 458, 483, 726
BssT1I CCWWGG 2 cut(s) 336, 854
Bst2UI CCWGG 2 cut(s) 664, 1008
Bst4CI ACNGT 6 cut(s) 200, 427, 520, 722, 897, 944
Bst6I CTCTTC 1 cut(s) 227
BstACI GRCGYC 4 cut(s) 168, 458, 483, 726
BstAPI GCANNNNNTGC 1 cut(s) 775
BstAUI TGTACA 1 cut(s) 642
BstC8I GCNNGC 3 cut(s) 218, 366, 840
BstDEI CTNAG 2 cut(s) 637, 804
BstDSI CCRYGG 1 cut(s) 229
BstENI CCTNNNNNAGG 1 cut(s) 296
BstFNI CGCG 1 cut(s) 949
BstH2I RGCGCY 3 cut(s) 461, 486, 729
BstHHI GCGC 5 cut(s) 388, 460, 485, 728, 844
BstKTI GATC 2 cut(s) 306, 411
BstMAI GTCTC 1 cut(s) 496
BstMBI GATC 2 cut(s) 303, 408
BstMCI CGRYCG 1 cut(s) 306
BstMWI GCNNNNNNNGC 8 cut(s) 240, 374, 383, 480, 563, 668, 775, 778
BstNI CCWGG 2 cut(s) 664, 1008
BstNSI RCATGY 2 cut(s) 790, 842
BstSCI CCNGG 8 cut(s) 662, 739, 752, 781, 808, 809, 819, 1006
BstUI CGCG 1 cut(s) 949
BstV1I GCAGC 2 cut(s) 781, 790
BstV2I GAAGAC 2 cut(s) 29, 265
BsuI GTATCC 1 cut(s) 1029
BsuRI GGCC 5 cut(s) 234, 323, 608, 668, 796
BtgI CCRYGG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 852
Cac8I GCNNGC 3 cut(s) 218, 366, 840
CfoI GCGC 5 cut(s) 388, 460, 485, 728, 844
Cfr13I GGNCC 4 cut(s) 587, 666, 757, 1001
Cfr9I CCCGGG 1 cut(s) 809
Csp6I GTAC 4 cut(s) 436, 468, 643, 817
CspCI CAANNNNNGTGG 2 cut(s) 703, 738
CviAII CATG 4 cut(s) 112, 787, 839, 926
CviQI GTAC 4 cut(s) 436, 468, 643, 817
DdeI CTNAG 2 cut(s) 637, 804
DinI GGCGCC 3 cut(s) 459, 484, 727
DpnI GATC 2 cut(s) 305, 410
DpnII GATC 2 cut(s) 303, 408
DrdI GACNNNNNNGTC 2 cut(s) 128, 419
DseDI GACNNNNNNGTC 2 cut(s) 128, 419
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
EciI GGCGGA 3 cut(s) 173, 268, 1011
Eco130I CCWWGG 2 cut(s) 336, 854
Eco32I GATATC 1 cut(s) 532
Eco47I GGWCC 3 cut(s) 587, 757, 1001
Eco88I CYCGRG 1 cut(s) 809
EcoNI CCTNNNNNAGG 1 cut(s) 296
EcoO109I RGGNCCY 2 cut(s) 587, 757
EcoRII CCWGG 2 cut(s) 662, 1006
EcoRV GATATC 1 cut(s) 532
EcoT14I CCWWGG 2 cut(s) 336, 854
EgeI GGCGCC 3 cut(s) 459, 484, 727
EheI GGCGCC 3 cut(s) 459, 484, 727
ErhI CCWWGG 2 cut(s) 336, 854
FaeI CATG 4 cut(s) 115, 790, 842, 929
FaiI YATR 8 cut(s) 113, 708, 788, 840, 861, 882, 927, 954
FaqI GGGAC 3 cut(s) 100, 529, 743
FatI CATG 4 cut(s) 111, 786, 838, 925
FauI CCCGC 1 cut(s) 63
Fnu4HI GCNGC 7 cut(s) 241, 441, 444, 481, 669, 770, 779
Fsp4HI GCNGC 7 cut(s) 241, 441, 444, 481, 669, 770, 779
FspBI CTAG 2 cut(s) 593, 855
GlaI GCGC 5 cut(s) 387, 459, 484, 727, 843
GluI GCNGC 7 cut(s) 241, 441, 444, 481, 669, 770, 779
GsuI CTGGAG 1 cut(s) 89
HaeII RGCGCY 3 cut(s) 461, 486, 729
HaeIII GGCC 5 cut(s) 234, 323, 608, 668, 796
HapII CCGG 8 cut(s) 327, 447, 612, 741, 753, 782, 810, 821
HhaI GCGC 5 cut(s) 388, 460, 485, 728, 844
Hin1I GRCGYC 4 cut(s) 168, 458, 483, 726
Hin1II CATG 4 cut(s) 115, 790, 842, 929
Hin6I GCGC 5 cut(s) 386, 458, 483, 726, 842
HinP1I GCGC 5 cut(s) 386, 458, 483, 726, 842
HinfI GANTC 5 cut(s) 176, 257, 348, 420, 930
HpaII CCGG 8 cut(s) 327, 447, 612, 741, 753, 782, 810, 821
HphI GGTGA 5 cut(s) 184, 199, 346, 415, 755
Hpy166II GTNNAC 1 cut(s) 643
Hpy188I TCNGA 2 cut(s) 541, 572
Hpy188III TCNNGA 2 cut(s) 514, 938
Hpy8I GTNNAC 1 cut(s) 643
Hpy99I CGWCG 9 cut(s) 44, 89, 134, 155, 170, 299, 374, 416, 515
HpyAV CCTTC 5 cut(s) 69, 292, 367, 578, 650
HpyCH4III ACNGT 6 cut(s) 200, 427, 520, 722, 897, 944
HpyCH4IV ACGT 3 cut(s) 42, 168, 510
HpyCH4V TGCA 2 cut(s) 632, 778
HpyF10VI GCNNNNNNNGC 8 cut(s) 240, 374, 383, 480, 563, 668, 775, 778
HpyF3I CTNAG 2 cut(s) 637, 804
HpySE526I ACGT 3 cut(s) 42, 168, 510
Hsp92I GRCGYC 4 cut(s) 168, 458, 483, 726
Hsp92II CATG 4 cut(s) 115, 790, 842, 929
HspAI GCGC 5 cut(s) 386, 458, 483, 726, 842
KasI GGCGCC 3 cut(s) 457, 482, 725
KflI GGGWCCC 1 cut(s) 757
Kzo9I GATC 2 cut(s) 303, 408
LguI GCTCTTC 1 cut(s) 227
LmnI GCTCC 3 cut(s) 267, 272, 988
Lsp1109I GCAGC 2 cut(s) 781, 790
LweI GCATC 1 cut(s) 982
MaeI CTAG 2 cut(s) 593, 855
MaeII ACGT 3 cut(s) 42, 168, 510
MaeIII GTNAC 5 cut(s) 200, 352, 421, 427, 875
MalI GATC 2 cut(s) 305, 410
MbiI CCGCTC 2 cut(s) 267, 671
MboI GATC 2 cut(s) 303, 408
MboII GAAGA 8 cut(s) 34, 214, 265, 304, 418, 514, 593, 665
MluCI AATT 3 cut(s) 65, 381, 868
Mly113I GGCGCC 3 cut(s) 458, 483, 726
MlyI GAGTC 2 cut(s) 429, 939
MmeI TCCRAC 1 cut(s) 929
MseI TTAA 1 cut(s) 68
MspI CCGG 8 cut(s) 327, 447, 612, 741, 753, 782, 810, 821
MspR9I CCNGG 8 cut(s) 664, 741, 754, 783, 810, 811, 821, 1008
Mva1269I GAATGC 2 cut(s) 632, 924
MvaI CCWGG 2 cut(s) 664, 1008
MvnI CGCG 1 cut(s) 949
MwoI GCNNNNNNNGC 8 cut(s) 240, 374, 383, 480, 563, 668, 775, 778
NarI GGCGCC 3 cut(s) 458, 483, 726
NciI CCSGG 6 cut(s) 741, 754, 783, 810, 811, 821
NdeII GATC 2 cut(s) 303, 408
NlaIII CATG 4 cut(s) 115, 790, 842, 929
NmeAIII GCCGAG 2 cut(s) 216, 473
NmuCI GTSAC 5 cut(s) 200, 352, 421, 427, 875
NspI RCATGY 2 cut(s) 790, 842
PaeI GCATGC 1 cut(s) 842
PciSI GCTCTTC 1 cut(s) 227
PcsI WCGNNNNNNNCGW 8 cut(s) 36, 126, 138, 147, 291, 303, 312, 483
PctI GAATGC 2 cut(s) 632, 924
PfeI GAWTC 3 cut(s) 176, 257, 348
PkrI GCNGC 7 cut(s) 242, 442, 445, 482, 670, 771, 780
Ple19I CGATCG 1 cut(s) 306
PleI GAGTC 2 cut(s) 428, 938
PluTI GGCGCC 3 cut(s) 461, 486, 729
PpsI GAGTC 2 cut(s) 428, 938
PpuMI RGGWCCY 2 cut(s) 587, 757
Psp5II RGGWCCY 2 cut(s) 587, 757
Psp6I CCWGG 2 cut(s) 662, 1006
PspGI CCWGG 2 cut(s) 662, 1006
PspPI GGNCC 4 cut(s) 587, 666, 757, 1001
PspPPI RGGWCCY 2 cut(s) 587, 757
PvuI CGATCG 1 cut(s) 306
RsaI GTAC 4 cut(s) 437, 469, 644, 818
RsaNI GTAC 4 cut(s) 436, 468, 643, 817
SapI GCTCTTC 1 cut(s) 227
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 7 cut(s) 241, 441, 444, 481, 669, 770, 779
Sau3AI GATC 2 cut(s) 303, 408
Sau96I GGNCC 4 cut(s) 587, 666, 757, 1001
SchI GAGTC 2 cut(s) 429, 939
ScrFI CCNGG 8 cut(s) 664, 741, 754, 783, 810, 811, 821, 1008
SfaNI GCATC 1 cut(s) 982
SfoI GGCGCC 3 cut(s) 459, 484, 727
SinI GGWCC 3 cut(s) 587, 757, 1001
SmaI CCCGGG 1 cut(s) 811
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
SphI GCATGC 1 cut(s) 842
SrfI GCCCGGGC 1 cut(s) 811
Sse9I AATT 3 cut(s) 65, 381, 868
SspDI GGCGCC 3 cut(s) 457, 482, 725
SspMI CTAG 2 cut(s) 593, 855
StyD4I CCNGG 8 cut(s) 662, 739, 752, 781, 808, 809, 819, 1006
StyI CCWWGG 2 cut(s) 336, 854
TaaI ACNGT 6 cut(s) 200, 427, 520, 722, 897, 944
TaiI ACGT 3 cut(s) 45, 171, 513
TaqI TCGA 7 cut(s) 47, 132, 141, 174, 294, 315, 411
TaqII GACCGA 1 cut(s) 665
TasI AATT 3 cut(s) 65, 381, 868
TatI WGTACW 1 cut(s) 642
TauI GCSGC 5 cut(s) 243, 443, 446, 483, 671
TfiI GAWTC 3 cut(s) 176, 257, 348
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 1 cut(s) 852
TseFI GTSAC 5 cut(s) 200, 352, 421, 427, 875
TseI GCWGC 2 cut(s) 769, 778
Tsp45I GTSAC 5 cut(s) 200, 352, 421, 427, 875
TspGWI ACGGA 4 cut(s) 41, 218, 259, 360
TspMI CCCGGG 1 cut(s) 809
TspRI CASTG 1 cut(s) 852
VpaK11BI GGWCC 3 cut(s) 587, 757, 1001
XagI CCTNNNNNAGG 1 cut(s) 296
XceI RCATGY 2 cut(s) 790, 842
XmaI CCCGGG 1 cut(s) 809
XmaJI CCTAGG 1 cut(s) 854
XspI CTAG 2 cut(s) 593, 855
ZraI GACGTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.