Rh1CG005400

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000611
Physical Location & Seq
Forward (+)
901476 .. 902234
759 bp
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UTR
Exon/CDS
Intron
Rh1CG005400.1

Sequence Viewer

Length: 759 bp
ATGAATTTGGGTAATTGGTTATCCATGGACTTCACAAAGAAGCGGAAGACGGACGAGAACGGCGACGTTTCGACTGCCCCGCCTTCCCAATTAACAACCCTAACCCCCGACGACTTCCGCAAACTCCTCCAGCCCATGTCCCACGACCACCTCGTCGAAATCCTCGAAAACGCCGTCGTTCGCCACCCCTACGTCCTCGAATCCCTCCGCCACGTCACCAACCGTGACCTCACCCTCCGCAAGCTCTTCGTCCGTGGCCTCGGCGGCGACACCACCACCGATTCGCTCCGCTCCGTCTTCTCCGCCTTCGGCGACCTAGACGAGGCGATCGTCATCTTCGACAAGGCCACCGGAAAATCCAAGGGCTACGGATTCGTCACCTTCAAGCACGCCGACGAAGCCCTAATTGCGCTCAAGGAACCGAGCAAGAAGATCGACGGCAGAGTCACCGTCACGCAGTACGCCGCCGCCGGACATTCGGCGCCGTTCAGTAGCAGCAACGGCGTCGCCGATGTCTCGGCAAGGAAGATTTACGTCGGGACGGTGCCGTTTGATATCTCCTCGGAGAGATTGTTGTCTGCGTTTTCGGCTTTCGGAGAGATTGAAGAAGGTCCTCTAGGGTTTGATAAGGCCACCGGAAAATCAAAGGGCTTTGCATTCTTCGTGTACAAGACCGAAGAAGGTGCCAGGGCCGCTCTCATTGAGCCTTTGAAAAACATTGATGGTCATCATGTGACTTGGCAAATTAGCTGTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

252

Amino Acids

27.57

Weight (kDa)

6.45

Isoelectric Point (pI)

33.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 82 - 149 5.7e-15 RNA recognition motif
RRM_7 PF16367 175 - 234 2.4e-06 RNA recognition motif
RRM_1 PF00076 177 - 234 8.5e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 152, 443
AccB1I GGYRCC 3 cut(s) 481, 544, 683
AccBSI CCGCTC 2 cut(s) 291, 695
AcsI RAATTY 1 cut(s) 4
AcyI GRCGYC 2 cut(s) 482, 504
AfaI GTAC 2 cut(s) 461, 668
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 3 cut(s) 385, 605, 712
AjiI CACGTC 1 cut(s) 214
AjnI CCWGG 1 cut(s) 686
AluBI AGCT 2 cut(s) 244, 750
AluI AGCT 2 cut(s) 244, 750
Alw26I GTCTC 1 cut(s) 520
AoxI GGCC 4 cut(s) 256, 345, 630, 690
ApeKI GCWGC 1 cut(s) 495
ApoI RAATTY 1 cut(s) 4
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
AspLEI GCGC 2 cut(s) 412, 484
AspS9I GGNCC 2 cut(s) 611, 690
AsuHPI GGTGA 4 cut(s) 208, 223, 370, 439
AvaII GGWCC 1 cut(s) 611
BanI GGYRCC 3 cut(s) 481, 544, 683
BbsI GAAGAC 2 cut(s) 53, 289
BbvI GCAGC 1 cut(s) 507
BccI CCATC 1 cut(s) 716
BceAI ACGGC 6 cut(s) 76, 158, 454, 469, 517, 532
BcgI CGANNNNNNTGC 8 cut(s) 229, 263, 415, 449, 487, 521, 665, 699
BciT130I CCWGG 1 cut(s) 688
BcoDI GTCTC 1 cut(s) 520
BfaI CTAG 2 cut(s) 317, 617
BfoI RGCGCY 1 cut(s) 485
BglI GCCNNNNNGGC 1 cut(s) 264
BisI GCNGC 5 cut(s) 265, 465, 468, 496, 693
BlsI GCNGC 5 cut(s) 266, 466, 469, 497, 694
Bme1390I CCNGG 1 cut(s) 688
Bme18I GGWCC 1 cut(s) 611
BmgBI CACGTC 1 cut(s) 214
BmgT120I GGNCC 2 cut(s) 611, 690
BmiI GGNNCC 4 cut(s) 420, 483, 546, 685
BmrFI CCNGG 1 cut(s) 688
BpiI GAAGAC 2 cut(s) 53, 289
BpmI CTGGAG 1 cut(s) 113
BpuEI CTTGAG 1 cut(s) 398
BsaBI GATNNNNATC 2 cut(s) 332, 726
BsaHI GRCGYC 2 cut(s) 482, 504
BsaJI CCNNGG 6 cut(s) 24, 253, 259, 360, 561, 687
BsaWI WCCGGW 2 cut(s) 350, 635
BsaXI ACNNNNNCTCC 2 cut(s) 557, 587
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse8I GATNNNNATC 2 cut(s) 332, 726
BseBI CCWGG 1 cut(s) 688
BseDI CCNNGG 6 cut(s) 24, 253, 259, 360, 561, 687
BseJI GATNNNNATC 2 cut(s) 332, 726
BseLI CCNNNNNNNGG 1 cut(s) 322
BseRI GAGGAG 2 cut(s) 116, 550
BseXI GCAGC 1 cut(s) 507
Bsh1285I CGRYCG 1 cut(s) 330
BshFI GGCC 4 cut(s) 258, 347, 632, 692
BshNI GGYRCC 3 cut(s) 481, 544, 683
BsiEI CGRYCG 1 cut(s) 330
BsiSI CCGG 3 cut(s) 351, 471, 636
BslFI GGGAC 2 cut(s) 124, 553
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 1 cut(s) 520
BsmFI GGGAC 2 cut(s) 124, 553
BsmI GAATGC 1 cut(s) 656
BsnI GGCC 4 cut(s) 258, 347, 632, 692
Bsp1407I TGTACA 1 cut(s) 666
Bsp143I GATC 2 cut(s) 327, 432
Bsp19I CCATGG 1 cut(s) 24
BspANI GGCC 4 cut(s) 258, 347, 632, 692
BspLI GGNNCC 4 cut(s) 420, 483, 546, 685
BspQI GCTCTTC 1 cut(s) 251
BspT107I GGYRCC 3 cut(s) 481, 544, 683
BsrBI CCGCTC 2 cut(s) 291, 695
BsrGI TGTACA 1 cut(s) 666
BssECI CCNNGG 6 cut(s) 24, 253, 259, 360, 561, 687
BssMI GATC 2 cut(s) 327, 432
BssNI GRCGYC 2 cut(s) 482, 504
BssT1I CCWWGG 2 cut(s) 24, 360
Bst2UI CCWGG 1 cut(s) 688
Bst4CI ACNGT 3 cut(s) 224, 451, 544
Bst6I CTCTTC 1 cut(s) 251
BstACI GRCGYC 2 cut(s) 482, 504
BstAUI TGTACA 1 cut(s) 666
BstC8I GCNNGC 2 cut(s) 242, 390
BstDSI CCRYGG 2 cut(s) 24, 253
BstENI CCTNNNNNAGG 1 cut(s) 320
BstH2I RGCGCY 1 cut(s) 485
BstHHI GCGC 2 cut(s) 412, 484
BstKTI GATC 2 cut(s) 330, 435
BstMAI GTCTC 1 cut(s) 520
BstMBI GATC 2 cut(s) 327, 432
BstMCI CGRYCG 1 cut(s) 330
BstMWI GCNNNNNNNGC 6 cut(s) 264, 398, 407, 501, 587, 692
BstNI CCWGG 1 cut(s) 688
BstSCI CCNGG 1 cut(s) 686
BstV1I GCAGC 1 cut(s) 507
BstV2I GAAGAC 2 cut(s) 53, 289
BsuRI GGCC 4 cut(s) 258, 347, 632, 692
BtgI CCRYGG 2 cut(s) 24, 253
BtrI CACGTC 1 cut(s) 214
Cac8I GCNNGC 2 cut(s) 242, 390
CfoI GCGC 2 cut(s) 412, 484
Cfr13I GGNCC 2 cut(s) 611, 690
CseI GACGC 1 cut(s) 493
Csp6I GTAC 2 cut(s) 460, 667
CviAII CATG 3 cut(s) 25, 136, 731
CviQI GTAC 2 cut(s) 460, 667
DinI GGCGCC 1 cut(s) 483
DpnI GATC 2 cut(s) 329, 434
DpnII GATC 2 cut(s) 327, 432
DrdI GACNNNNNNGTC 2 cut(s) 152, 443
DseDI GACNNNNNNGTC 2 cut(s) 152, 443
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
EciI GGCGGA 2 cut(s) 197, 292
Eco130I CCWWGG 2 cut(s) 24, 360
Eco32I GATATC 1 cut(s) 556
Eco47I GGWCC 1 cut(s) 611
EcoNI CCTNNNNNAGG 1 cut(s) 320
EcoO109I RGGNCCY 1 cut(s) 611
EcoRII CCWGG 1 cut(s) 686
EcoRV GATATC 1 cut(s) 556
EcoT14I CCWWGG 2 cut(s) 24, 360
EgeI GGCGCC 1 cut(s) 483
EheI GGCGCC 1 cut(s) 483
ErhI CCWWGG 2 cut(s) 24, 360
FaeI CATG 3 cut(s) 28, 139, 734
FaiI YATR 3 cut(s) 26, 137, 732
FaqI GGGAC 2 cut(s) 124, 553
FatI CATG 3 cut(s) 24, 135, 730
FauI CCCGC 1 cut(s) 87
Fnu4HI GCNGC 5 cut(s) 265, 465, 468, 496, 693
Fsp4HI GCNGC 5 cut(s) 265, 465, 468, 496, 693
FspBI CTAG 2 cut(s) 317, 617
GlaI GCGC 2 cut(s) 411, 483
GluI GCNGC 5 cut(s) 265, 465, 468, 496, 693
GsuI CTGGAG 1 cut(s) 113
HaeII RGCGCY 1 cut(s) 485
HaeIII GGCC 4 cut(s) 258, 347, 632, 692
HapII CCGG 3 cut(s) 351, 471, 636
HgaI GACGC 1 cut(s) 493
HhaI GCGC 2 cut(s) 412, 484
Hin1I GRCGYC 2 cut(s) 482, 504
Hin1II CATG 3 cut(s) 28, 139, 734
Hin6I GCGC 2 cut(s) 410, 482
HinP1I GCGC 2 cut(s) 410, 482
HinfI GANTC 4 cut(s) 200, 281, 372, 444
HpaII CCGG 3 cut(s) 351, 471, 636
HphI GGTGA 4 cut(s) 208, 223, 370, 439
Hpy166II GTNNAC 1 cut(s) 667
Hpy188I TCNGA 2 cut(s) 565, 596
Hpy188III TCNNGA 1 cut(s) 538
Hpy8I GTNNAC 1 cut(s) 667
Hpy99I CGWCG 8 cut(s) 68, 113, 158, 179, 398, 440, 509, 539
HpyAV CCTTC 5 cut(s) 93, 316, 391, 602, 674
HpyCH4III ACNGT 3 cut(s) 224, 451, 544
HpyCH4IV ACGT 4 cut(s) 66, 192, 213, 534
HpyCH4V TGCA 1 cut(s) 656
HpyF10VI GCNNNNNNNGC 6 cut(s) 264, 398, 407, 501, 587, 692
HpySE526I ACGT 4 cut(s) 66, 192, 213, 534
Hsp92I GRCGYC 2 cut(s) 482, 504
Hsp92II CATG 3 cut(s) 28, 139, 734
HspAI GCGC 2 cut(s) 410, 482
KasI GGCGCC 1 cut(s) 481
Kzo9I GATC 2 cut(s) 327, 432
LguI GCTCTTC 1 cut(s) 251
LmnI GCTCC 2 cut(s) 291, 296
LpnPI CCDG 6 cut(s) 143, 364, 484, 649, 673, 700
Lsp1109I GCAGC 1 cut(s) 507
MaeI CTAG 2 cut(s) 317, 617
MaeII ACGT 4 cut(s) 66, 192, 213, 534
MaeIII GTNAC 6 cut(s) 214, 224, 376, 445, 451, 733
MalI GATC 2 cut(s) 329, 434
MbiI CCGCTC 2 cut(s) 291, 695
MboI GATC 2 cut(s) 327, 432
MboII GAAGA 9 cut(s) 58, 238, 289, 328, 442, 538, 617, 652, 689
MluCI AATT 5 cut(s) 4, 13, 89, 405, 744
Mly113I GGCGCC 1 cut(s) 482
MlyI GAGTC 1 cut(s) 453
MseI TTAA 1 cut(s) 92
MspI CCGG 3 cut(s) 351, 471, 636
MspR9I CCNGG 1 cut(s) 688
Mva1269I GAATGC 1 cut(s) 656
MvaI CCWGG 1 cut(s) 688
MwoI GCNNNNNNNGC 6 cut(s) 264, 398, 407, 501, 587, 692
NarI GGCGCC 1 cut(s) 482
NcoI CCATGG 1 cut(s) 24
NdeII GATC 2 cut(s) 327, 432
NlaIII CATG 3 cut(s) 28, 139, 734
NlaIV GGNNCC 4 cut(s) 420, 483, 546, 685
NmeAIII GCCGAG 2 cut(s) 240, 497
NmuCI GTSAC 6 cut(s) 214, 224, 376, 445, 451, 733
PciSI GCTCTTC 1 cut(s) 251
PcsI WCGNNNNNNNCGW 7 cut(s) 60, 150, 162, 171, 327, 336, 507
PctI GAATGC 1 cut(s) 656
PfeI GAWTC 3 cut(s) 200, 281, 372
PkrI GCNGC 5 cut(s) 266, 466, 469, 497, 694
Ple19I CGATCG 1 cut(s) 330
PleI GAGTC 1 cut(s) 452
PluTI GGCGCC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 452
PpuMI RGGWCCY 1 cut(s) 611
Psp5II RGGWCCY 1 cut(s) 611
Psp6I CCWGG 1 cut(s) 686
PspGI CCWGG 1 cut(s) 686
PspN4I GGNNCC 4 cut(s) 420, 483, 546, 685
PspPI GGNCC 2 cut(s) 611, 690
PspPPI RGGWCCY 1 cut(s) 611
PvuI CGATCG 1 cut(s) 330
RsaI GTAC 2 cut(s) 461, 668
RsaNI GTAC 2 cut(s) 460, 667
SapI GCTCTTC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 5 cut(s) 265, 465, 468, 496, 693
Sau3AI GATC 2 cut(s) 327, 432
Sau96I GGNCC 2 cut(s) 611, 690
SchI GAGTC 1 cut(s) 453
ScrFI CCNGG 1 cut(s) 688
SfoI GGCGCC 1 cut(s) 483
SinI GGWCC 1 cut(s) 611
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 5 cut(s) 4, 13, 89, 405, 744
SspDI GGCGCC 1 cut(s) 481
SspMI CTAG 2 cut(s) 317, 617
StyD4I CCNGG 1 cut(s) 686
StyI CCWWGG 2 cut(s) 24, 360
TaaI ACNGT 3 cut(s) 224, 451, 544
TaiI ACGT 4 cut(s) 69, 195, 216, 537
TaqI TCGA 6 cut(s) 71, 156, 165, 198, 339, 435
TaqII GACCGA 1 cut(s) 689
TasI AATT 5 cut(s) 4, 13, 89, 405, 744
TatI WGTACW 1 cut(s) 666
TauI GCSGC 4 cut(s) 267, 467, 470, 695
TfiI GAWTC 3 cut(s) 200, 281, 372
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TseFI GTSAC 6 cut(s) 214, 224, 376, 445, 451, 733
TseI GCWGC 1 cut(s) 495
Tsp45I GTSAC 6 cut(s) 214, 224, 376, 445, 451, 733
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 4 cut(s) 65, 242, 283, 384
VpaK11BI GGWCC 1 cut(s) 611
XagI CCTNNNNNAGG 1 cut(s) 320
XapI RAATTY 1 cut(s) 4
XspI CTAG 2 cut(s) 317, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.