Rw5G019950

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000611
Physical Location & Seq
Forward (+)
26029411 .. 26033485
4075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G019950.1

Sequence Viewer

Length: 1293 bp
ATGGACCCAACCAAGAAGCGCAAGCTCGACGAGAACGGCGTCGTTTTGGACACCGACCCCTCCGTCCCCAAGCTCGATCGCGAAGACGCCCGGAAAATCATCGAGCGATTCACCCCCGATCAGCTCATCGACGTCCTCCTCGACGCCATCTCCCGCCACTCCGACGTCCTCGACGCCGTCCGATTGATCGCCGATCCCGACACCGCCCAGCGCAAGCTCTTCATCCGCGGCCTCGGCTGGGACACCACCACCGAGGGCCTCCGCAGCCTCTTCTCCGCCTACGGCGAGCTCGAGGAAGCCATCGTCATTCTCGACAAGAACACCGGCAAGAGCAAAGGCTACGGCTTCGTCACCTTCAAGCACGTCGACGCCGCCTACCTCGCCCTCAAGGAGCCCAGCAAGAAGATCGACGGCCGCATGACCGTCACCCAGCTCGCCGCCGCCGGCAACCAGGGCTCCACCACCGCCTCCGTCAACCCAGTCGACGTCTCGCTCCGGAAGATCTACGTGGCCAATGTGCCGTATGAGATGGCGGCGGATAAGCTGCTGGCGCATTTCGCCCAGTACGGCGAGGTTGAGGAGGGGCCGCTAGGGTTTGATAAGCAGACCGGCAAGTGCAAAGGCTATGCTTTGTTTGTGTACAAGTCTCCGGAGGGTGCGCAGAAGGCCCTGGTTGATCCGATTAAGAACATTGAGGGGAGGCAGTTGAATTGTAAGTTTGCTAGCGATGGGAAGAAGCCCAAGATGGGTGGCGGTGCCGACGGTGGTGCCGGGCAGGGGTCCGTGGGTGGACCGAATGCCCATGGAGATGGGATGGGGATGGCTCCGCCGTCCTCGATGCCTGGGCAGTATGGCGGCCCCGGTGGGTTTGGGTATGGGGGGTTTTCGGGTGGCCAACCTCCGTTGGGGCATCATCCTCTGGGTGGACCAGGGCTGTCATCTGTGGGAAATCAGGGGCCGGGGAGTGGTGGGTATGGTTCTGGGCTGGGTGGTGCTTATAATTACGGTGGGCCGGGTTCTACAGGATATGGTTTGGGTGGTGCTGGTGGGTTGGGTGGTGGTGGACTAGGTAGTGGAGGGCTGGGTGGTGGAGCTCCTGGTAGCGGCACTGGTGGTACTGGGTCGTCTTTGTATGGATTGCCACCGAGCTCAGGTGGGTTGCCTTCTGGTAGGTATCCTGAGGGTGGACCTTATGGCCTGTCAGCATTTCAGAATCAACACCACCAGCCAGGTACATCACCCTTGCCAAGGGTTCCTCCAGGGGGAATGTATCCCAATGCACCGTATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002237 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006954 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009692 GO:0009693 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010033 GO:0010150 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010817 GO:0016070 GO:0016071 GO:0017091 GO:0019219 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031974 GO:0031981 GO:0032496 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0034641 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043449 GO:0043450 GO:0043487 GO:0043488 GO:0043489 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0046483 GO:0048255 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0061013 GO:0065007 GO:0065008 GO:0070013 GO:0070935 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090693 GO:0097159 GO:0099402 GO:1900673 GO:1900674 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1902369 GO:1902373 GO:1903311 GO:1903312
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

430

Amino Acids

43.82

Weight (kDa)

7.09

Isoelectric Point (pI)

28.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 73 - 139 7.7e-16 RNA recognition motif
RRM_1 PF00076 168 - 225 9e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 999
AasI GACNNNNNNGTC 1 cut(s) 62
AatII GACGTC 3 cut(s) 135, 168, 489
Acc16I TGCGCA 1 cut(s) 660
AccB1I GGYRCC 2 cut(s) 755, 767
AccI GTMKAC 2 cut(s) 366, 483
AccII CGCG 2 cut(s) 81, 228
AccIII TCCGGA 2 cut(s) 495, 649
AclWI GGATC 2 cut(s) 188, 671
AcoI YGGCCR 3 cut(s) 412, 510, 892
AcyI GRCGYC 8 cut(s) 39, 87, 132, 144, 165, 174, 369, 486
AfaI GTAC 4 cut(s) 566, 641, 1117, 1234
AgsI TTSAA 2 cut(s) 358, 709
AjiI CACGTC 1 cut(s) 364
AjnI CCWGG 7 cut(s) 450, 669, 841, 928, 1096, 1228, 1258
AluBI AGCT 9 cut(s) 25, 73, 124, 217, 289, 433, 544, 1094, 1149
AluI AGCT 9 cut(s) 25, 73, 124, 217, 289, 433, 544, 1094, 1149
Alw21I GWGCWC 3 cut(s) 291, 1096, 1151
Alw26I GTCTC 2 cut(s) 493, 651
AlwI GGATC 2 cut(s) 188, 671
Ama87I CYCGRG 1 cut(s) 290
Aor13HI TCCGGA 2 cut(s) 495, 649
ApeKI GCWGC 2 cut(s) 264, 544
AspLEI GCGC 4 cut(s) 21, 213, 553, 661
AsuC2I CCSGG 5 cut(s) 91, 772, 861, 960, 1014
AsuHPI GGTGA 4 cut(s) 103, 343, 418, 1230
AsuNHI GCTAGC 1 cut(s) 722
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 5 cut(s) 4, 780, 791, 926, 1187
AxyI CCTNAGG 1 cut(s) 1179
BalI TGGCCA 2 cut(s) 512, 894
BanI GGYRCC 2 cut(s) 755, 767
BanII GRGCYC 5 cut(s) 291, 396, 458, 1096, 1151
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 3 cut(s) 291, 1096, 1151
BbvI GCAGC 2 cut(s) 276, 531
BccI CCATC 8 cut(s) 155, 308, 523, 722, 739, 803, 808, 814
BceAI ACGGC 8 cut(s) 52, 161, 298, 358, 427, 505, 583, 814
BcgI CGANNNNNNTGC 4 cut(s) 388, 422, 749, 783
BciT130I CCWGG 7 cut(s) 452, 671, 843, 930, 1098, 1230, 1260
BciVI GTATCC 2 cut(s) 1185, 1281
BcnI CCSGG 5 cut(s) 91, 772, 861, 960, 1014
BcoDI GTCTC 2 cut(s) 493, 651
BfaI CTAG 3 cut(s) 590, 723, 1067
BfmI CTRYAG 1 cut(s) 1020
BfuI GTATCC 2 cut(s) 1185, 1281
BglII AGATCT 1 cut(s) 501
Bme18I GGWCC 5 cut(s) 4, 780, 791, 926, 1187
BmeT110I CYCGRG 1 cut(s) 290
BmgBI CACGTC 1 cut(s) 364
BmrI ACTGGG 3 cut(s) 473, 556, 1128
BmsI GCATC 2 cut(s) 828, 919
BmtI GCTAGC 1 cut(s) 726
BmuI ACTGGG 3 cut(s) 473, 556, 1128
BpiI GAAGAC 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 1242
Bpu10I CCTNAGC 1 cut(s) 1150
BpuEI CTTGAG 1 cut(s) 371
BpuMI CCSGG 5 cut(s) 91, 772, 861, 960, 1014
BsaAI YACGTR 1 cut(s) 508
BsaHI GRCGYC 8 cut(s) 39, 87, 132, 144, 165, 174, 369, 486
BsaWI WCCGGW 2 cut(s) 495, 649
BsaXI ACNNNNNCTCC 4 cut(s) 134, 164, 440, 470
Bse118I RCCGGY 3 cut(s) 323, 443, 608
Bse1I ACTGG 4 cut(s) 479, 562, 1114, 1123
Bse21I CCTNAGG 1 cut(s) 1179
BseAI TCCGGA 2 cut(s) 495, 649
BseBI CCWGG 7 cut(s) 452, 671, 843, 930, 1098, 1230, 1260
BseGI GGATG 4 cut(s) 222, 819, 825, 913
BseMII CTCAG 2 cut(s) 1164, 1170
BseNI ACTGG 4 cut(s) 479, 562, 1114, 1123
BseRI GAGGAG 2 cut(s) 128, 593
BseX3I CGGCCG 1 cut(s) 412
BseXI GCAGC 2 cut(s) 276, 531
BseYI CCCAGC 6 cut(s) 207, 237, 395, 429, 985, 1081
Bsh1236I CGCG 2 cut(s) 81, 228
Bsh1285I CGRYCG 2 cut(s) 79, 415
BshNI GGYRCC 2 cut(s) 755, 767
BsiEI CGRYCG 2 cut(s) 79, 415
BsiHKAI GWGCWC 3 cut(s) 291, 1096, 1151
BsiHKCI CYCGRG 1 cut(s) 290
BslFI GGGAC 2 cut(s) 50, 254
BsmAI GTCTC 2 cut(s) 493, 651
BsmBI CGTCTC 1 cut(s) 493
BsmFI GGGAC 2 cut(s) 50, 254
BsmI GAATGC 1 cut(s) 802
BsoBI CYCGRG 1 cut(s) 290
Bsp1286I GDGCHC 5 cut(s) 291, 396, 458, 1096, 1151
Bsp13I TCCGGA 2 cut(s) 495, 649
Bsp1407I TGTACA 1 cut(s) 639
Bsp143I GATC 7 cut(s) 76, 118, 186, 193, 405, 501, 676
Bsp19I CCATGG 1 cut(s) 802
Bsp68I TCGCGA 1 cut(s) 81
BspCNI CTCAG 2 cut(s) 1163, 1171
BspEI TCCGGA 2 cut(s) 495, 649
BspFNI CGCG 2 cut(s) 81, 228
BspOI GCTAGC 1 cut(s) 726
BspPI GGATC 2 cut(s) 188, 671
BspQI GCTCTTC 1 cut(s) 224
BspT107I GGYRCC 2 cut(s) 755, 767
BsrFI RCCGGY 3 cut(s) 323, 443, 608
BsrGI TGTACA 1 cut(s) 639
BsrI ACTGG 4 cut(s) 479, 562, 1114, 1123
BssAI RCCGGY 3 cut(s) 323, 443, 608
BssMI GATC 7 cut(s) 76, 118, 186, 193, 405, 501, 676
BssNI GRCGYC 8 cut(s) 39, 87, 132, 144, 165, 174, 369, 486
BssT1I CCWWGG 2 cut(s) 802, 1247
Bst2UI CCWGG 7 cut(s) 452, 671, 843, 930, 1098, 1230, 1260
Bst4CI ACNGT 4 cut(s) 424, 764, 1007, 1284
Bst6I CTCTTC 2 cut(s) 224, 275
BstACI GRCGYC 8 cut(s) 39, 87, 132, 144, 165, 174, 369, 486
BstAUI TGTACA 1 cut(s) 639
BstBAI YACGTR 1 cut(s) 508
BstC8I GCNNGC 7 cut(s) 23, 215, 287, 435, 445, 549, 724
BstDEI CTNAG 2 cut(s) 1150, 1179
BstDSI CCRYGG 3 cut(s) 226, 783, 802
BstENI CCTNNNNNAGG 1 cut(s) 1246
BstF5I GGATG 4 cut(s) 222, 819, 825, 913
BstFNI CGCG 2 cut(s) 81, 228
BstHHI GCGC 4 cut(s) 21, 213, 553, 661
BstKTI GATC 7 cut(s) 79, 121, 189, 196, 408, 504, 679
BstMAI GTCTC 2 cut(s) 493, 651
BstMBI GATC 7 cut(s) 76, 118, 186, 193, 405, 501, 676
BstMCI CGRYCG 2 cut(s) 79, 415
BstMWI GCNNNNNNNGC 7 cut(s) 234, 264, 380, 453, 550, 557, 665
BstNI CCWGG 7 cut(s) 452, 671, 843, 930, 1098, 1230, 1260
BstSFI CTRYAG 1 cut(s) 1020
BstUI CGCG 2 cut(s) 81, 228
BstV1I GCAGC 2 cut(s) 276, 531
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 501
BstXI CCANNNNNNTGG 1 cut(s) 809
BstYI RGATCY 1 cut(s) 501
BstZI CGGCCG 1 cut(s) 412
Bsu36I CCTNAGG 1 cut(s) 1179
BsuI GTATCC 2 cut(s) 1185, 1281
BtgI CCRYGG 3 cut(s) 226, 783, 802
BtgZI GCGATG 1 cut(s) 741
BtrI CACGTC 1 cut(s) 364
BtsCI GGATG 4 cut(s) 222, 819, 825, 913
BtsIMutI CAGTG 1 cut(s) 1107
BtuMI TCGCGA 1 cut(s) 81
Cac8I GCNNGC 7 cut(s) 23, 215, 287, 435, 445, 549, 724
CfoI GCGC 4 cut(s) 21, 213, 553, 661
Cfr10I RCCGGY 3 cut(s) 323, 443, 608
Cfr42I CCGCGG 1 cut(s) 229
CseI GACGC 5 cut(s) 28, 95, 152, 182, 377
Csp6I GTAC 4 cut(s) 565, 640, 1116, 1233
CspCI CAANNNNNGTGG 2 cut(s) 730, 765
CviAII CATG 2 cut(s) 418, 803
CviQI GTAC 4 cut(s) 565, 640, 1116, 1233
DdeI CTNAG 2 cut(s) 1150, 1179
DpnI GATC 7 cut(s) 78, 120, 188, 195, 407, 503, 678
DpnII GATC 7 cut(s) 76, 118, 186, 193, 405, 501, 676
DrdI GACNNNNNNGTC 1 cut(s) 62
DseDI GACNNNNNNGTC 1 cut(s) 62
EaeI YGGCCR 3 cut(s) 412, 510, 892
EagI CGGCCG 1 cut(s) 412
Eam1104I CTCTTC 2 cut(s) 224, 275
EarI CTCTTC 2 cut(s) 224, 275
EciI GGCGGA 3 cut(s) 265, 551, 816
Ecl136II GAGCTC 3 cut(s) 289, 1094, 1149
EclXI CGGCCG 1 cut(s) 412
Eco130I CCWWGG 2 cut(s) 802, 1247
Eco24I GRGCYC 5 cut(s) 291, 396, 458, 1096, 1151
Eco47I GGWCC 5 cut(s) 4, 780, 791, 926, 1187
Eco52I CGGCCG 1 cut(s) 412
Eco53kI GAGCTC 3 cut(s) 289, 1094, 1149
Eco81I CCTNAGG 1 cut(s) 1179
Eco88I CYCGRG 1 cut(s) 290
EcoICRI GAGCTC 3 cut(s) 289, 1094, 1149
EcoNI CCTNNNNNAGG 1 cut(s) 1246
EcoO109I RGGNCCY 2 cut(s) 256, 667
EcoRII CCWGG 7 cut(s) 450, 669, 841, 928, 1096, 1228, 1258
EcoT14I CCWWGG 2 cut(s) 802, 1247
EcoT38I GRGCYC 5 cut(s) 291, 396, 458, 1096, 1151
ErhI CCWWGG 2 cut(s) 802, 1247
Esp3I CGTCTC 1 cut(s) 493
FaeI CATG 2 cut(s) 421, 806
FaqI GGGAC 2 cut(s) 50, 254
FatI CATG 2 cut(s) 417, 802
FauI CCCGC 1 cut(s) 161
FblI GTMKAC 2 cut(s) 366, 483
FokI GGATG 4 cut(s) 209, 826, 832, 900
FriOI GRGCYC 5 cut(s) 291, 396, 458, 1096, 1151
FspBI CTAG 3 cut(s) 590, 723, 1067
FspI TGCGCA 1 cut(s) 660
GlaI GCGC 4 cut(s) 20, 212, 552, 660
GsaI CCCAGC 6 cut(s) 211, 241, 399, 433, 989, 1085
GsuI CTGGAG 1 cut(s) 1242
HgaI GACGC 5 cut(s) 28, 95, 152, 182, 377
HhaI GCGC 4 cut(s) 21, 213, 553, 661
Hin1I GRCGYC 8 cut(s) 39, 87, 132, 144, 165, 174, 369, 486
Hin1II CATG 2 cut(s) 421, 806
Hin6I GCGC 4 cut(s) 19, 211, 551, 659
HinP1I GCGC 4 cut(s) 19, 211, 551, 659
HincII GTYRAC 3 cut(s) 367, 475, 484
HindII GTYRAC 3 cut(s) 367, 475, 484
HinfI GANTC 2 cut(s) 108, 1213
HphI GGTGA 4 cut(s) 103, 343, 418, 1230
Hpy166II GTNNAC 8 cut(s) 367, 475, 484, 640, 791, 926, 1064, 1187
Hpy188I TCNGA 4 cut(s) 163, 182, 681, 1212
Hpy188III TCNNGA 6 cut(s) 80, 197, 311, 496, 650, 1178
Hpy8I GTNNAC 8 cut(s) 367, 475, 484, 640, 791, 926, 1064, 1187
HpyAV CCTTC 3 cut(s) 364, 658, 1173
HpyCH4III ACNGT 4 cut(s) 424, 764, 1007, 1284
HpyCH4IV ACGT 5 cut(s) 132, 165, 363, 486, 507
HpyCH4V TGCA 2 cut(s) 618, 1280
HpyF10VI GCNNNNNNNGC 7 cut(s) 234, 264, 380, 453, 550, 557, 665
HpyF3I CTNAG 2 cut(s) 1150, 1179
HpySE526I ACGT 5 cut(s) 132, 165, 363, 486, 507
Hsp92I GRCGYC 8 cut(s) 39, 87, 132, 144, 165, 174, 369, 486
Hsp92II CATG 2 cut(s) 421, 806
HspAI GCGC 4 cut(s) 19, 211, 551, 659
Kpn2I TCCGGA 2 cut(s) 495, 649
KroI GCCGGC 1 cut(s) 443
KroNI GCCGGC 1 cut(s) 445
KspI CCGCGG 1 cut(s) 229
Kzo9I GATC 7 cut(s) 76, 118, 186, 193, 405, 501, 676
LguI GCTCTTC 1 cut(s) 224
LmnI GCTCC 6 cut(s) 391, 461, 498, 829, 1091, 1099
Lsp1109I GCAGC 2 cut(s) 276, 531
LweI GCATC 2 cut(s) 828, 919
MaeI CTAG 3 cut(s) 590, 723, 1067
MaeII ACGT 5 cut(s) 132, 165, 363, 486, 507
MaeIII GTNAC 2 cut(s) 349, 424
MalI GATC 7 cut(s) 78, 120, 188, 195, 407, 503, 678
MboI GATC 7 cut(s) 76, 118, 186, 193, 405, 501, 676
MboII GAAGA 6 cut(s) 95, 211, 262, 415, 511, 745
MflI RGATCY 1 cut(s) 501
MhlI GDGCHC 5 cut(s) 291, 396, 458, 1096, 1151
MlsI TGGCCA 2 cut(s) 512, 894
MluCI AATT 2 cut(s) 709, 1000
MluNI TGGCCA 2 cut(s) 512, 894
MmeI TCCRAC 1 cut(s) 186
Mox20I TGGCCA 2 cut(s) 512, 894
MroI TCCGGA 2 cut(s) 495, 649
MroNI GCCGGC 1 cut(s) 443
MscI TGGCCA 2 cut(s) 512, 894
MseI TTAA 1 cut(s) 684
MslI CAYNNNNRTG 1 cut(s) 807
Msp20I TGGCCA 2 cut(s) 512, 894
MspA1I CMGCKG 1 cut(s) 228
Mva1269I GAATGC 1 cut(s) 802
MvaI CCWGG 7 cut(s) 452, 671, 843, 930, 1098, 1230, 1260
MvnI CGCG 2 cut(s) 81, 228
MwoI GCNNNNNNNGC 7 cut(s) 234, 264, 380, 453, 550, 557, 665
NaeI GCCGGC 1 cut(s) 445
NciI CCSGG 5 cut(s) 91, 772, 861, 960, 1014
NcoI CCATGG 1 cut(s) 802
NdeII GATC 7 cut(s) 76, 118, 186, 193, 405, 501, 676
NgoMIV GCCGGC 1 cut(s) 443
NheI GCTAGC 1 cut(s) 722
NlaIII CATG 2 cut(s) 421, 806
NmeAIII GCCGAG 1 cut(s) 213
NmuCI GTSAC 2 cut(s) 349, 424
NruI TCGCGA 1 cut(s) 81
NsbI TGCGCA 1 cut(s) 660
PaeR7I CTCGAG 1 cut(s) 290
PciSI GCTCTTC 1 cut(s) 224
PcsI WCGNNNNNNNCGW 5 cut(s) 36, 138, 195, 288, 309
PctI GAATGC 1 cut(s) 802
PdiI GCCGGC 1 cut(s) 445
PfeI GAWTC 2 cut(s) 108, 1213
PflFI GACNNNGTC 1 cut(s) 176
Ple19I CGATCG 1 cut(s) 79
Ppu21I YACGTR 1 cut(s) 508
PsiI TTATAA 1 cut(s) 999
Psp124BI GAGCTC 3 cut(s) 291, 1096, 1151
Psp6I CCWGG 7 cut(s) 450, 669, 841, 928, 1096, 1228, 1258
PspFI CCCAGC 6 cut(s) 207, 237, 395, 429, 985, 1081
PspGI CCWGG 7 cut(s) 450, 669, 841, 928, 1096, 1228, 1258
PspXI VCTCGAGB 1 cut(s) 290
PsuI RGATCY 1 cut(s) 501
PsyI GACNNNGTC 1 cut(s) 176
PvuI CGATCG 1 cut(s) 79
RruI TCGCGA 1 cut(s) 81
RsaI GTAC 4 cut(s) 566, 641, 1117, 1234
RsaNI GTAC 4 cut(s) 565, 640, 1116, 1233
RseI CAYNNNNRTG 1 cut(s) 807
SacI GAGCTC 3 cut(s) 291, 1096, 1151
SacII CCGCGG 1 cut(s) 229
SalI GTCGAC 2 cut(s) 365, 482
SapI GCTCTTC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 684
Sau3AI GATC 7 cut(s) 76, 118, 186, 193, 405, 501, 676
SduI GDGCHC 5 cut(s) 291, 396, 458, 1096, 1151
SfaNI GCATC 2 cut(s) 828, 919
SfcI CTRYAG 1 cut(s) 1020
Sfr274I CTCGAG 1 cut(s) 290
Sfr303I CCGCGG 1 cut(s) 229
SgrBI CCGCGG 1 cut(s) 229
SgrDI CGTCGACG 1 cut(s) 365
SinI GGWCC 5 cut(s) 4, 780, 791, 926, 1187
SlaI CTCGAG 1 cut(s) 290
SmiMI CAYNNNNRTG 1 cut(s) 807
SmlI CTYRAG 2 cut(s) 290, 386
SmoI CTYRAG 2 cut(s) 290, 386
Sse9I AATT 2 cut(s) 709, 1000
SspMI CTAG 3 cut(s) 590, 723, 1067
SstI GAGCTC 3 cut(s) 291, 1096, 1151
StyI CCWWGG 2 cut(s) 802, 1247
TaaI ACNGT 4 cut(s) 424, 764, 1007, 1284
TaiI ACGT 5 cut(s) 135, 168, 366, 489, 510
TaqII GACCGA 1 cut(s) 808
TasI AATT 2 cut(s) 709, 1000
TatI WGTACW 1 cut(s) 639
TauI GCSGC 9 cut(s) 231, 374, 417, 440, 443, 536, 589, 858, 1107
TfiI GAWTC 2 cut(s) 108, 1213
Tru1I TTAA 1 cut(s) 684
Tru9I TTAA 1 cut(s) 684
TscAI CASTG 1 cut(s) 1114
TseFI GTSAC 2 cut(s) 349, 424
TseI GCWGC 2 cut(s) 264, 544
Tsp45I GTSAC 2 cut(s) 349, 424
TspDTI ATGAA 1 cut(s) 211
TspGWI ACGGA 4 cut(s) 52, 460, 772, 891
TspRI CASTG 1 cut(s) 1114
Tth111I GACNNNGTC 1 cut(s) 176
VpaK11BI GGWCC 5 cut(s) 4, 780, 791, 926, 1187
XagI CCTNNNNNAGG 1 cut(s) 1246
XhoI CTCGAG 1 cut(s) 290
XmiI GTMKAC 2 cut(s) 366, 483
XspI CTAG 3 cut(s) 590, 723, 1067
ZraI GACGTC 3 cut(s) 133, 166, 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.