Rh1AG051900

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000611
Physical Location & Seq
Forward (+)
8727272 .. 8732736
5465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG051900.1

Sequence Viewer

Length: 870 bp
ATGTCCCACGACCACCTCGTCGAAATCCTCGAAAACGCCGTCGTTCGCCACCCCGACGTCCTTGAATCCCTCCGCCACGTCACCAACCATGACCTCACCCTCCGCAAGCTCTTCGTCCGTGGCCTCGGCGGCGACACCACCACCGATTCGCTCCGCTCCGTCTTCTCCGCCTTCGGCGACCTCGACGAGGCGATCGTCATCTTCGACAAGGCCACCGGAAAATCCAAGGGCTACGGATTCGTCACCTTCAAGCACGCCGACGAAGCCCTAATTGCGCTCAAGGAACCGAGCAAGAAGATCGACGGCAGAGTCACCGTCACGCAGTACGCCGCCGCCGGACATTCGGCGCCGTTCAGTAGCAGCAACGGCGGCGCCGATGTCTCGGCGAGGAAGATTTACGTCGGGACGGTGCCGTTTGATATCTCCTCGGAGAGATTGTTGTCTGCGTTTTCGGCTTTCGGAGAGATTGAAGAAGGTCCTCTAGGGTTTGATAAGGCCACCGGAAAATCAAAGGGCTTTGCATTCTTCGTGTACAAGACCAAAGAAGGTGCCAGGGCCGCTCTCATTGAGCCTTTGAAAAACATTGATGCTGTGGATAGTAAGAAGGGCAAACACGGTGGCGCCCAAGCCCCTCCCGGTGATATTTCCGGGGTCCCTCCGCCGCAGCAAATGCAGCCGGGCATGTTTAGGCCACAGCCTCAGCCTGGGCAGTACCCGGTTTTTGCTGGTGGGCATGAGCCAGTGGTTCCTAGGTATAATACTAATTTCAGTCAGTATGGGGTGCCTCCACAGTTGCCTCCAAATTCGGTAGGAATGCCTCATGGAGTCTATCCAGACAGTTCGCGATTTGATTACTTGTTTGAACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

289

Amino Acids

31.22

Weight (kDa)

6.8

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 37 - 104 7.3e-15 RNA recognition motif
RRM_7 PF16367 130 - 187 1e-05 RNA recognition motif
RRM_1 PF00076 132 - 188 1.9e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 17, 308
AatII GACGTC 1 cut(s) 60
AccB1I GGYRCC 6 cut(s) 346, 371, 409, 548, 620, 781
AccBSI CCGCTC 2 cut(s) 156, 560
AccII CGCG 1 cut(s) 844
AcsI RAATTY 1 cut(s) 802
AcyI GRCGYC 4 cut(s) 57, 347, 372, 621
AfaI GTAC 3 cut(s) 326, 533, 713
AfiI CCNNNNNNNGG 2 cut(s) 187, 704
AgsI TTSAA 5 cut(s) 65, 250, 470, 577, 863
AjiI CACGTC 1 cut(s) 79
AjnI CCWGG 2 cut(s) 551, 703
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 385
AoxI GGCC 5 cut(s) 121, 210, 495, 555, 689
ApeKI GCWGC 3 cut(s) 360, 664, 673
ApoI RAATTY 1 cut(s) 802
ArsI GACNNNNNNTTYG 2 cut(s) 24, 56
AspA2I CCTAGG 1 cut(s) 749
AspLEI GCGC 4 cut(s) 277, 349, 374, 623
AspS9I GGNCC 3 cut(s) 476, 555, 652
AsuC2I CCSGG 4 cut(s) 636, 649, 678, 716
AsuHPI GGTGA 5 cut(s) 73, 88, 235, 304, 650
AvaII GGWCC 2 cut(s) 476, 652
AvrII CCTAGG 1 cut(s) 749
BanI GGYRCC 6 cut(s) 346, 371, 409, 548, 620, 781
BbsI GAAGAC 1 cut(s) 154
BbvCI CCTCAGC 1 cut(s) 699
BbvI GCAGC 3 cut(s) 372, 676, 685
BceAI ACGGC 5 cut(s) 23, 319, 334, 382, 397
BcgI CGANNNNNNTGC 4 cut(s) 94, 128, 280, 314
BciT130I CCWGG 2 cut(s) 553, 705
BcnI CCSGG 4 cut(s) 636, 649, 678, 716
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 2 cut(s) 482, 750
BfoI RGCGCY 3 cut(s) 350, 375, 624
BglI GCCNNNNNGGC 1 cut(s) 129
BisI GCNGC 9 cut(s) 130, 330, 333, 361, 370, 558, 662, 665, 674
BlnI CCTAGG 1 cut(s) 749
BlsI GCNGC 9 cut(s) 131, 331, 334, 362, 371, 559, 663, 666, 675
Bme1390I CCNGG 6 cut(s) 553, 636, 649, 678, 705, 716
Bme18I GGWCC 2 cut(s) 476, 652
BmgBI CACGTC 1 cut(s) 79
BmgT120I GGNCC 3 cut(s) 476, 555, 652
BmrFI CCNGG 6 cut(s) 553, 636, 649, 678, 705, 716
BmsI GCATC 1 cut(s) 577
BpiI GAAGAC 1 cut(s) 154
Bpu10I CCTNAGC 1 cut(s) 699
BpuEI CTTGAG 1 cut(s) 263
BpuMI CCSGG 4 cut(s) 636, 649, 678, 716
BsaBI GATNNNNATC 1 cut(s) 197
BsaHI GRCGYC 4 cut(s) 57, 347, 372, 621
BsaJI CCNNGG 8 cut(s) 118, 124, 225, 426, 552, 648, 704, 749
BsaWI WCCGGW 2 cut(s) 215, 500
BsaXI ACNNNNNCTCC 2 cut(s) 422, 452
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 704
Bse1I ACTGG 1 cut(s) 740
Bse8I GATNNNNATC 1 cut(s) 197
BseBI CCWGG 2 cut(s) 553, 705
BseDI CCNNGG 8 cut(s) 118, 124, 225, 426, 552, 648, 704, 749
BseJI GATNNNNATC 1 cut(s) 197
BseLI CCNNNNNNNGG 2 cut(s) 187, 704
BseMII CTCAG 1 cut(s) 713
BseNI ACTGG 1 cut(s) 740
BseRI GAGGAG 1 cut(s) 415
BseXI GCAGC 3 cut(s) 372, 676, 685
Bsh1236I CGCG 1 cut(s) 844
Bsh1285I CGRYCG 1 cut(s) 195
BshFI GGCC 5 cut(s) 123, 212, 497, 557, 691
BshNI GGYRCC 6 cut(s) 346, 371, 409, 548, 620, 781
BsiEI CGRYCG 1 cut(s) 195
BsiSI CCGG 7 cut(s) 216, 336, 501, 636, 648, 677, 716
BslFI GGGAC 2 cut(s) 418, 638
BslI CCNNNNNNNGG 2 cut(s) 187, 704
BsmAI GTCTC 1 cut(s) 385
BsmFI GGGAC 2 cut(s) 418, 638
BsmI GAATGC 2 cut(s) 521, 819
BsnI GGCC 5 cut(s) 123, 212, 497, 557, 691
Bsp1407I TGTACA 1 cut(s) 531
Bsp143I GATC 2 cut(s) 192, 297
Bsp68I TCGCGA 1 cut(s) 844
BspANI GGCC 5 cut(s) 123, 212, 497, 557, 691
BspCNI CTCAG 1 cut(s) 712
BspFNI CGCG 1 cut(s) 844
BspQI GCTCTTC 1 cut(s) 116
BspT107I GGYRCC 6 cut(s) 346, 371, 409, 548, 620, 781
BsrBI CCGCTC 2 cut(s) 156, 560
BsrGI TGTACA 1 cut(s) 531
BsrI ACTGG 1 cut(s) 740
BssECI CCNNGG 8 cut(s) 118, 124, 225, 426, 552, 648, 704, 749
BssMI GATC 2 cut(s) 192, 297
BssNI GRCGYC 4 cut(s) 57, 347, 372, 621
BssT1I CCWWGG 2 cut(s) 225, 749
Bst2UI CCWGG 2 cut(s) 553, 705
Bst4CI ACNGT 6 cut(s) 316, 409, 617, 792, 839, 867
Bst6I CTCTTC 1 cut(s) 116
BstACI GRCGYC 4 cut(s) 57, 347, 372, 621
BstAPI GCANNNNNTGC 1 cut(s) 670
BstAUI TGTACA 1 cut(s) 531
BstC8I GCNNGC 2 cut(s) 107, 255
BstDEI CTNAG 1 cut(s) 699
BstDSI CCRYGG 1 cut(s) 118
BstENI CCTNNNNNAGG 1 cut(s) 185
BstFNI CGCG 1 cut(s) 844
BstH2I RGCGCY 3 cut(s) 350, 375, 624
BstHHI GCGC 4 cut(s) 277, 349, 374, 623
BstKTI GATC 2 cut(s) 195, 300
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 2 cut(s) 192, 297
BstMCI CGRYCG 1 cut(s) 195
BstMWI GCNNNNNNNGC 9 cut(s) 129, 263, 272, 366, 369, 452, 557, 670, 673
BstNI CCWGG 2 cut(s) 553, 705
BstNSI RCATGY 1 cut(s) 685
BstSCI CCNGG 6 cut(s) 551, 634, 647, 676, 703, 714
BstUI CGCG 1 cut(s) 844
BstV1I GCAGC 3 cut(s) 372, 676, 685
BstV2I GAAGAC 1 cut(s) 154
BsuRI GGCC 5 cut(s) 123, 212, 497, 557, 691
BtgI CCRYGG 1 cut(s) 118
BtrI CACGTC 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 747
BtuMI TCGCGA 1 cut(s) 844
Cac8I GCNNGC 2 cut(s) 107, 255
CfoI GCGC 4 cut(s) 277, 349, 374, 623
Cfr13I GGNCC 3 cut(s) 476, 555, 652
Csp6I GTAC 3 cut(s) 325, 532, 712
CspCI CAANNNNNGTGG 2 cut(s) 598, 633
CviAII CATG 4 cut(s) 89, 682, 734, 821
CviQI GTAC 3 cut(s) 325, 532, 712
DdeI CTNAG 1 cut(s) 699
DinI GGCGCC 3 cut(s) 348, 373, 622
DpnI GATC 2 cut(s) 194, 299
DpnII GATC 2 cut(s) 192, 297
DrdI GACNNNNNNGTC 2 cut(s) 17, 308
DseDI GACNNNNNNGTC 2 cut(s) 17, 308
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
EciI GGCGGA 3 cut(s) 62, 157, 648
Eco130I CCWWGG 2 cut(s) 225, 749
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 2 cut(s) 476, 652
EcoNI CCTNNNNNAGG 1 cut(s) 185
EcoO109I RGGNCCY 2 cut(s) 476, 652
EcoRII CCWGG 2 cut(s) 551, 703
EcoRV GATATC 1 cut(s) 421
EcoT14I CCWWGG 2 cut(s) 225, 749
EgeI GGCGCC 3 cut(s) 348, 373, 622
EheI GGCGCC 3 cut(s) 348, 373, 622
ErhI CCWWGG 2 cut(s) 225, 749
FaeI CATG 4 cut(s) 92, 685, 737, 824
FaiI YATR 6 cut(s) 90, 683, 735, 756, 777, 822
FaqI GGGAC 2 cut(s) 418, 638
FatI CATG 4 cut(s) 88, 681, 733, 820
Fnu4HI GCNGC 9 cut(s) 130, 330, 333, 361, 370, 558, 662, 665, 674
Fsp4HI GCNGC 9 cut(s) 130, 330, 333, 361, 370, 558, 662, 665, 674
FspBI CTAG 2 cut(s) 482, 750
GlaI GCGC 4 cut(s) 276, 348, 373, 622
GluI GCNGC 9 cut(s) 130, 330, 333, 361, 370, 558, 662, 665, 674
HaeII RGCGCY 3 cut(s) 350, 375, 624
HaeIII GGCC 5 cut(s) 123, 212, 497, 557, 691
HapII CCGG 7 cut(s) 216, 336, 501, 636, 648, 677, 716
HhaI GCGC 4 cut(s) 277, 349, 374, 623
Hin1I GRCGYC 4 cut(s) 57, 347, 372, 621
Hin1II CATG 4 cut(s) 92, 685, 737, 824
Hin6I GCGC 4 cut(s) 275, 347, 372, 621
HinP1I GCGC 4 cut(s) 275, 347, 372, 621
HinfI GANTC 5 cut(s) 65, 146, 237, 309, 825
HpaII CCGG 7 cut(s) 216, 336, 501, 636, 648, 677, 716
HphI GGTGA 5 cut(s) 73, 88, 235, 304, 650
Hpy166II GTNNAC 1 cut(s) 532
Hpy188I TCNGA 2 cut(s) 430, 461
Hpy188III TCNNGA 3 cut(s) 403, 833, 843
Hpy8I GTNNAC 1 cut(s) 532
Hpy99I CGWCG 7 cut(s) 23, 44, 59, 188, 263, 305, 404
HpyAV CCTTC 5 cut(s) 181, 256, 467, 539, 598
HpyCH4III ACNGT 6 cut(s) 316, 409, 617, 792, 839, 867
HpyCH4IV ACGT 3 cut(s) 57, 78, 399
HpyCH4V TGCA 2 cut(s) 521, 673
HpyF10VI GCNNNNNNNGC 9 cut(s) 129, 263, 272, 366, 369, 452, 557, 670, 673
HpyF3I CTNAG 1 cut(s) 699
HpySE526I ACGT 3 cut(s) 57, 78, 399
Hsp92I GRCGYC 4 cut(s) 57, 347, 372, 621
Hsp92II CATG 4 cut(s) 92, 685, 737, 824
HspAI GCGC 4 cut(s) 275, 347, 372, 621
KasI GGCGCC 3 cut(s) 346, 371, 620
KflI GGGWCCC 1 cut(s) 652
Kzo9I GATC 2 cut(s) 192, 297
LguI GCTCTTC 1 cut(s) 116
LmnI GCTCC 2 cut(s) 156, 161
Lsp1109I GCAGC 3 cut(s) 372, 676, 685
LweI GCATC 1 cut(s) 577
MaeI CTAG 2 cut(s) 482, 750
MaeII ACGT 3 cut(s) 57, 78, 399
MaeIII GTNAC 4 cut(s) 79, 241, 310, 316
MalI GATC 2 cut(s) 194, 299
MbiI CCGCTC 2 cut(s) 156, 560
MboI GATC 2 cut(s) 192, 297
MboII GAAGA 7 cut(s) 103, 154, 193, 307, 403, 482, 517
MluCI AATT 3 cut(s) 270, 763, 802
Mly113I GGCGCC 3 cut(s) 347, 372, 621
MlyI GAGTC 2 cut(s) 318, 834
MspI CCGG 7 cut(s) 216, 336, 501, 636, 648, 677, 716
MspR9I CCNGG 6 cut(s) 553, 636, 649, 678, 705, 716
Mva1269I GAATGC 2 cut(s) 521, 819
MvaI CCWGG 2 cut(s) 553, 705
MvnI CGCG 1 cut(s) 844
MwoI GCNNNNNNNGC 9 cut(s) 129, 263, 272, 366, 369, 452, 557, 670, 673
NarI GGCGCC 3 cut(s) 347, 372, 621
NciI CCSGG 4 cut(s) 636, 649, 678, 716
NdeII GATC 2 cut(s) 192, 297
NlaIII CATG 4 cut(s) 92, 685, 737, 824
NmeAIII GCCGAG 2 cut(s) 105, 362
NmuCI GTSAC 4 cut(s) 79, 241, 310, 316
NruI TCGCGA 1 cut(s) 844
NspI RCATGY 1 cut(s) 685
PciSI GCTCTTC 1 cut(s) 116
PcsI WCGNNNNNNNCGW 7 cut(s) 15, 27, 36, 180, 192, 201, 372
PctI GAATGC 2 cut(s) 521, 819
PfeI GAWTC 3 cut(s) 65, 146, 237
PkrI GCNGC 9 cut(s) 131, 331, 334, 362, 371, 559, 663, 666, 675
Ple19I CGATCG 1 cut(s) 195
PleI GAGTC 2 cut(s) 317, 833
PluTI GGCGCC 3 cut(s) 350, 375, 624
PpsI GAGTC 2 cut(s) 317, 833
PpuMI RGGWCCY 2 cut(s) 476, 652
Psp5II RGGWCCY 2 cut(s) 476, 652
Psp6I CCWGG 2 cut(s) 551, 703
PspGI CCWGG 2 cut(s) 551, 703
PspPI GGNCC 3 cut(s) 476, 555, 652
PspPPI RGGWCCY 2 cut(s) 476, 652
PvuI CGATCG 1 cut(s) 195
RruI TCGCGA 1 cut(s) 844
RsaI GTAC 3 cut(s) 326, 533, 713
RsaNI GTAC 3 cut(s) 325, 532, 712
SapI GCTCTTC 1 cut(s) 116
SatI GCNGC 9 cut(s) 130, 330, 333, 361, 370, 558, 662, 665, 674
Sau3AI GATC 2 cut(s) 192, 297
Sau96I GGNCC 3 cut(s) 476, 555, 652
SchI GAGTC 2 cut(s) 318, 834
ScrFI CCNGG 6 cut(s) 553, 636, 649, 678, 705, 716
SfaNI GCATC 1 cut(s) 577
SfoI GGCGCC 3 cut(s) 348, 373, 622
SinI GGWCC 2 cut(s) 476, 652
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
Sse9I AATT 3 cut(s) 270, 763, 802
SspDI GGCGCC 3 cut(s) 346, 371, 620
SspMI CTAG 2 cut(s) 482, 750
StyD4I CCNGG 6 cut(s) 551, 634, 647, 676, 703, 714
StyI CCWWGG 2 cut(s) 225, 749
TaaI ACNGT 6 cut(s) 316, 409, 617, 792, 839, 867
TaiI ACGT 3 cut(s) 60, 81, 402
TaqI TCGA 5 cut(s) 21, 30, 183, 204, 300
TasI AATT 3 cut(s) 270, 763, 802
TatI WGTACW 1 cut(s) 531
TauI GCSGC 6 cut(s) 132, 332, 335, 372, 560, 664
TfiI GAWTC 3 cut(s) 65, 146, 237
TscAI CASTG 1 cut(s) 747
TseFI GTSAC 4 cut(s) 79, 241, 310, 316
TseI GCWGC 3 cut(s) 360, 664, 673
Tsp45I GTSAC 4 cut(s) 79, 241, 310, 316
TspGWI ACGGA 3 cut(s) 107, 148, 249
TspRI CASTG 1 cut(s) 747
VpaK11BI GGWCC 2 cut(s) 476, 652
XagI CCTNNNNNAGG 1 cut(s) 185
XapI RAATTY 1 cut(s) 802
XceI RCATGY 1 cut(s) 685
XmaJI CCTAGG 1 cut(s) 749
XspI CTAG 2 cut(s) 482, 750
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.