Rh4DG301000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000611
Physical Location & Seq
Reverse (-)
52271191 .. 52271494
304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG301000.1

Sequence Viewer

Length: 222 bp
ATGTTAAAGGAGGAGGGTTTTCTGGTAACTTGGGAAGGGAAAATATCTCCGGTCCCCGCTTCCTATAGAAGTTACCTCACAAAGATCTGCCTTGAGCGATATGACGAGTTGGACGAGTTGAAAGCACGCCTGCAAAGAATTGTTCCGGCAATCCTGATAGTGTTTCTTTCCAATTGGTTGGGTTTTGATGTGAGGAAGCAGAACATGAATTTGGGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

8.53

Weight (kDa)

7.86

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 57
AcsI RAATTY 1 cut(s) 208
AgsI TTSAA 1 cut(s) 121
AjuI GAANNNNNNNTTGG 1 cut(s) 194
ApoI RAATTY 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 52
AvaII GGWCC 1 cut(s) 52
BfmI CTRYAG 1 cut(s) 64
BglII AGATCT 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 113
BsaWI WCCGGW 1 cut(s) 49
BseRI GAGGAG 1 cut(s) 26
BsiSI CCGG 2 cut(s) 50, 146
BslFI GGGAC 1 cut(s) 38
BsmFI GGGAC 1 cut(s) 38
Bsp143I GATC 1 cut(s) 84
BspACI CCGC 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 54
BssMI GATC 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 127, 131
BstKTI GATC 1 cut(s) 87
BstMBI GATC 1 cut(s) 84
BstSFI CTRYAG 1 cut(s) 64
BstX2I RGATCY 1 cut(s) 84
BstXI CCANNNNNNTGG 1 cut(s) 178
BstYI RGATCY 1 cut(s) 84
Cac8I GCNNGC 2 cut(s) 127, 131
Cfr13I GGNCC 1 cut(s) 52
CviAII CATG 1 cut(s) 205
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 52
FaeI CATG 1 cut(s) 208
FaiI YATR 3 cut(s) 66, 102, 206
FaqI GGGAC 1 cut(s) 38
FatI CATG 1 cut(s) 204
FauI CCCGC 1 cut(s) 64
HapII CCGG 2 cut(s) 50, 146
Hin1II CATG 1 cut(s) 208
HpaII CCGG 2 cut(s) 50, 146
Hpy188III TCNNGA 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 29
HpyCH4V TGCA 1 cut(s) 133
Hsp92II CATG 1 cut(s) 208
Kzo9I GATC 1 cut(s) 84
LpnPI CCDG 5 cut(s) 8, 63, 143, 159, 167
MaeIII GTNAC 2 cut(s) 25, 71
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MfeI CAATTG 1 cut(s) 172
MflI RGATCY 1 cut(s) 84
MluCI AATT 4 cut(s) 138, 172, 208, 217
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 4 cut(s) 4, 7, 86, 186
MseI TTAA 1 cut(s) 5
MspI CCGG 2 cut(s) 50, 146
MunI CAATTG 1 cut(s) 172
NdeII GATC 1 cut(s) 84
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 1 cut(s) 54
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 52
PsuI RGATCY 1 cut(s) 84
SaqAI TTAA 1 cut(s) 5
Sau3AI GATC 1 cut(s) 84
Sau96I GGNCC 1 cut(s) 52
SetI ASST 1 cut(s) 78
SfcI CTRYAG 1 cut(s) 64
SinI GGWCC 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 4 cut(s) 138, 172, 208, 217
SsiI CCGC 1 cut(s) 57
TasI AATT 4 cut(s) 138, 172, 208, 217
Tru1I TTAA 1 cut(s) 5
Tru9I TTAA 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.