Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000611

Physical Location & Seq

Genomic Coordinates Reverse (-)

24813650 .. 24821646

Gene Structure 7997 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023519

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1644 bp

ATGGAGGACGTAAAGAAGAGAAAGCTAGACAACAGTGAAGGAATCTCACCGCATTCAGAGGAAGACTTGCGCGCCCTTCTTGACCCTCTCGCTAAGCCCCAGCTCGTCGATCTCCTAGCTAAACTGGGTTCCCAATATCCTTCAATTGCAGAGGAAATTAAGGGTATAGCCACAGCAGATCCTGTTCACCGCAAGCTTTTTGTTCGTGGGTTGGCCTGGAATACCTCTTCCGATACTTTGTGTGCTGCGTTTAGTGAGCATGGAGAAATCGAGGAAGGAGCTGTCATCTATGACAAAGCGAGTGGAAAATCGCGGGGATACGGTTTCATTACGTACAAACATATGGAGTCAACTCACCGTGCGCTCAGAGCTCCTAGCAAGTTAATTGATGGTCGCATGGCTGTTTGTAATTTAGCATGTGAGGGGTTAACTGGTTCAAGTTCTACCCATGATCTTACCCAGAGGAAACTCTACATTGGGGGCTTATCACCAAATGTCACTAGTGAGATGCTCCTCCACTTCTTTGGCAGGCACGGTGATATAGAAGAAGGTTCAGTTGCATATGACAAGGACACAAATGAGTCACGTGGGTTTGGCTTTGTAACGTTCAAGACAGTGGAGGCTGCAAAGAAGGCCATAGATGATCCACAAAAGACCCTTGGGGGGAGGAATGTCATTGTGAAACTTGCTGATTCCCACAAAGGCAGAACAATTCAAACACAGTTACCGACACCAATGGTTCAAATGCCATTACCTTTAGCACCTGGATATGCACAACCTGGAAAAGCCCATCCAAGCACCGCCCCTCATGGCTATGGTTACCCTCCAGCTGTGGGACCATACCATGATAATACTTATTCAAGTCCTCCCACAGCTCCATACCCAACACAGTCGCAAATTCCACGGAAGGAAGTTTACTTGCAGCAAATCTTTGAGCTCGGCAAGCGACCAACCCTAGCTTCTCTCACCGACGCTATCTCCGGCGAAGGAACGCCTTCATCGAGCCAGTCACCGGCGGTATCTAAACAGATATACTCATCAAGGGACATTGCATCGCATACAACTCTGAAACCCAGAAAGGACGGGCAGGACACCCAGGAAGAACTGCAGAAGAGGAACCTCCAGGAGGAGTTGGAAGACCGTGAGAGGAGGCATTTTTCATCAAAGGATAAATATAGTTATGACAGAGATCGCAGCAGGAGAGGGAGCCAGCTTTTGTTGGAAGGGACAAGAAGGGACACTGAAGACCGCATTGTACCCCGTAATGTAGATGCTGATGATTCTGATTTGGAAGTCAAAAGTGATGATGACAGTGATGAAGATGACGATGATGATGAGGATGACACAGAAGCTCTTTTGGCTGAGCTTGAACAAATAAAGAGGGAAAGAGCAGAGGAGAAGCGTCGAAAGGAAGAACAACAGGTGGCGGAAGAGCTTAAAGTCAAGGAAGCAGAGCTTCTCCGAGGAAACCCATTACTTAATAATCCAATAACCGCTTCTTCCTTCAGTGTGAAAAGAAGATGGGATGATGATGTGGTGTTCAAAAATCAGGCCCGTGGTGAAACCAAGACTCCTAAGCGCTTCATCAACGACACAGTGAGGAACGATTTTCACCGCAAATTTCTGCATAAATACATGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Myb_DNA-binding RRM_1

Protein Analysis

548

Amino Acids

61.39

Weight (kDa)

5.96

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	66 - 132	5.3e-12	RNA recognition motif
RRM_1	PF00076	157 - 224	5.5e-16	RNA recognition motif
Cwf_Cwc_15	PF04889	336 - 547	3.5e-65	Cwf15/Cwc15 cell cycle control protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15010 AT3G15010
fragaria_vesca	FvH4_3g07890 FvH4_3g18630 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550 FvH4_6g22550
malus_domestica	MD03G1240500.v1.1 MD10G1280800.v1.1 MD11G1259900.v1.1 MD12G1058300.v1.1
prunus_persica	Prupe.4G060300_v2.0.a1 Prupe.4G170100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1 Prupe.7G075100_v2.0.a1
pyrus_communis	pycom12g05260
rosa_chinensis	RchiOBHm_Chr1g0364191 RchiOBHm_Chr3g0480051 RchiOBHm_Chr5g0010701 RchiOBHm_Chr5g0031451
rosa_laevigata	RLG00000023519 RLG00000031772 RLG00000033308
rosa_multiflora	Rmu_co8296297.1_g000001 Rmu_sc0003684.1_g000004 Rmu_sc0006604.1_g000017 Rmu_sc0008864.1_g000013 Rmu_sc0013975.1_g000001 Rmu_sc0021762.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005170 Rroxscaffold_1G00065690 Rroxscaffold_6G00401800
rosa_rugosa	Rorug03G0180200 Rorug03G0180300 Rorug03G0180400 Rorug03G0180500 Rorug04G0451600 Rorug04G0451700 Rorug05G0125900
rosa_samantha	Rh1AG051900 Rh1AG321800 Rh1CG005400 Rh1CG301300 Rh1DG000800 Rh3AG231300 Rh3BG263700 Rh3CG261200 Rh3DG257100 Rh3DG316100 Rh4AG036900 Rh4AG037000 Rh4BG212900 Rh4BG213000 Rh4CG196500 Rh4DG300800 Rh4DG300900 Rh4DG301000 Rh5AG083400 Rh5AG218600 Rh5BG078600 Rh5BG218000 Rh5CG091400 Rh5CG241600 Rh5DG078800 Rh5DG223200 Rh7BG406600 Rh7DG422300
rosa_wichuraiana	Rw0G000640 Rw0G022340 Rw1G003330 Rw3G020470 Rw3G020800 Rw5G019360 Rw5G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	72, 313
AciI	CCGC	9 cut(s)	50, 190, 313, 801, 1016, 1249, 1427, 1494, 1615
AclI	AACGTT	1 cut(s)	605
AclWI	GGATC	2 cut(s)	173, 638
AcsI	RAATTY	2 cut(s)	897, 1619
AcuI	CTGAAG	2 cut(s)	1263, 1489
AcvI	CACGTG	1 cut(s)	587
AfaI	GTAC	2 cut(s)	335, 1257
AfeI	AGCGCT	1 cut(s)	1580
AfiI	CCNNNNNNNGG	4 cut(s)	663, 833, 1012, 1126
AgsI	TTSAA	8 cut(s)	144, 438, 610, 716, 743, 861, 1370, 1543
AhlI	ACTAGT	1 cut(s)	500
AjnI	CCWGG	5 cut(s)	215, 763, 778, 1095, 1122
AjuI	GAANNNNNNNTTGG	4 cut(s)	943, 975, 1480, 1512
Alw21I	GWGCWC	2 cut(s)	373, 939
AlwI	GGATC	2 cut(s)	173, 638
AlwNI	CAGNNNCTG	1 cut(s)	182
Aor51HI	AGCGCT	1 cut(s)	1580
AoxI	GGCC	3 cut(s)	213, 633, 1551
ApeKI	GCWGC	4 cut(s)	245, 623, 922, 1194
ApoI	RAATTY	2 cut(s)	897, 1619
Asp700I	GAANNNNTTC	1 cut(s)	994
AspLEI	GCGC	4 cut(s)	72, 74, 364, 1581
AspS9I	GGNCC	2 cut(s)	836, 1552
AsuHPI	GGTGA	9 cut(s)	39, 179, 347, 480, 548, 958, 1002, 1571, 1604
AvaII	GGWCC	1 cut(s)	836
BanII	GRGCYC	2 cut(s)	373, 939
BarI	GAAGNNNNNNTAC	2 cut(s)	899, 931
BbrPI	CACGTG	1 cut(s)	587
BbsI	GAAGAC	3 cut(s)	69, 1143, 1251
Bbv12I	GWGCWC	2 cut(s)	373, 939
BbvI	GCAGC	4 cut(s)	232, 610, 934, 1206
BccI	CCATC	3 cut(s)	383, 798, 1515
BciT130I	CCWGG	5 cut(s)	217, 765, 780, 1097, 1124
BciVI	GTATCC	1 cut(s)	311
BcuI	ACTAGT	1 cut(s)	500
BfaI	CTAG	5 cut(s)	26, 116, 375, 501, 956
BfmI	CTRYAG	1 cut(s)	1106
BfoI	RGCGCY	1 cut(s)	1582
BfuI	GTATCC	1 cut(s)	311
BisI	GCNGC	4 cut(s)	246, 624, 923, 1195
BlpI	GCTNAGC	2 cut(s)	93, 1362
BlsI	GCNGC	4 cut(s)	247, 625, 924, 1196
Bme1390I	CCNGG	5 cut(s)	217, 765, 780, 1097, 1124
Bme18I	GGWCC	1 cut(s)	836
BmgT120I	GGNCC	2 cut(s)	836, 1552
BmiI	GGNNCC	4 cut(s)	130, 837, 1118, 1208
BmrFI	CCNGG	5 cut(s)	217, 765, 780, 1097, 1124
BmrI	ACTGGG	1 cut(s)	134
BmsI	GCATC	3 cut(s)	498, 1061, 1261
BmuI	ACTGGG	1 cut(s)	134
BpiI	GAAGAC	3 cut(s)	69, 1143, 1251
BpmI	CTGGAG	2 cut(s)	810, 1106
Bpu10I	CCTNAGC	1 cut(s)	1575
Bpu1102I	GCTNAGC	2 cut(s)	93, 1362
BsaAI	YACGTR	2 cut(s)	333, 587
BsaJI	CCNNGG	5 cut(s)	658, 902, 1095, 1462, 1555
BsaXI	ACNNNNNCTCC	4 cut(s)	962, 992, 1555, 1585
Bsc4I	CCNNNNNNNGG	4 cut(s)	663, 833, 1012, 1126
Bse118I	RCCGGY	1 cut(s)	1012
Bse1I	ACTGG	3 cut(s)	129, 436, 1006
Bse3DI	GCAATG	1 cut(s)	1047
BseBI	CCWGG	5 cut(s)	217, 765, 780, 1097, 1124
BseDI	CCNNGG	5 cut(s)	658, 902, 1095, 1462, 1555
BseGI	GGATG	3 cut(s)	790, 1345, 1531
BseLI	CCNNNNNNNGG	4 cut(s)	663, 833, 1012, 1126
BseMI	GCAATG	1 cut(s)	1047
BseMII	CTCAG	2 cut(s)	379, 1353
BseNI	ACTGG	3 cut(s)	129, 436, 1006
BsePI	GCGCGC	1 cut(s)	70
BseRI	GAGGAG	4 cut(s)	503, 1142, 1162, 1409
BseXI	GCAGC	4 cut(s)	232, 610, 934, 1206
BseYI	CCCAGC	1 cut(s)	99
Bsh1236I	CGCG	2 cut(s)	72, 313
BshFI	GGCC	3 cut(s)	215, 635, 1553
BsiHKAI	GWGCWC	2 cut(s)	373, 939
BsiSI	CCGG	2 cut(s)	981, 1013
BslFI	GGGAC	4 cut(s)	849, 1058, 1240, 1250
BslI	CCNNNNNNNGG	4 cut(s)	663, 833, 1012, 1126
BsmFI	GGGAC	4 cut(s)	849, 1058, 1240, 1250
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	3 cut(s)	215, 635, 1553
Bsp1286I	GDGCHC	2 cut(s)	373, 939
Bsp143I	GATC	5 cut(s)	109, 178, 451, 643, 1189
Bsp1720I	GCTNAGC	2 cut(s)	93, 1362
BspACI	CCGC	9 cut(s)	50, 190, 313, 801, 1016, 1249, 1427, 1494, 1615
BspANI	GGCC	3 cut(s)	215, 635, 1553
BspCNI	CTCAG	2 cut(s)	378, 1354
BspFNI	CGCG	2 cut(s)	72, 313
BspLI	GGNNCC	4 cut(s)	130, 837, 1118, 1208
BspMAI	CTGCAG	1 cut(s)	1110
BspPI	GGATC	2 cut(s)	173, 638
BspQI	GCTCTTC	1 cut(s)	1425
BsrDI	GCAATG	1 cut(s)	1047
BsrFI	RCCGGY	1 cut(s)	1012
BsrI	ACTGG	3 cut(s)	129, 436, 1006
BssAI	RCCGGY	1 cut(s)	1012
BssECI	CCNNGG	5 cut(s)	658, 902, 1095, 1462, 1555
BssHII	GCGCGC	1 cut(s)	70
BssMI	GATC	5 cut(s)	109, 178, 451, 643, 1189
BssT1I	CCWWGG	1 cut(s)	658
Bst2UI	CCWGG	5 cut(s)	217, 765, 780, 1097, 1124
Bst6I	CTCTTC	4 cut(s)	11, 232, 1106, 1425
BstBAI	YACGTR	2 cut(s)	333, 587
BstC8I	GCNNGC	5 cut(s)	72, 194, 530, 944, 1211
BstDEI	CTNAG	4 cut(s)	93, 365, 1362, 1575
BstDSI	CCRYGG	2 cut(s)	902, 1555
BstEII	GGTNACC	1 cut(s)	818
BstENI	CCTNNNNNAGG	1 cut(s)	1124
BstF5I	GGATG	3 cut(s)	790, 1345, 1531
BstFNI	CGCG	2 cut(s)	72, 313
BstH2I	RGCGCY	1 cut(s)	1582
BstHHI	GCGC	4 cut(s)	72, 74, 364, 1581
BstKTI	GATC	5 cut(s)	112, 181, 454, 646, 1192
BstMBI	GATC	5 cut(s)	109, 178, 451, 643, 1189
BstMWI	GCNNNNNNNGC	4 cut(s)	368, 632, 943, 1358
BstNI	CCWGG	5 cut(s)	217, 765, 780, 1097, 1124
BstNSI	RCATGY	1 cut(s)	420
BstPI	GGTNACC	1 cut(s)	818
BstSCI	CCNGG	5 cut(s)	215, 763, 778, 1095, 1122
BstSFI	CTRYAG	1 cut(s)	1106
BstSNI	TACGTA	1 cut(s)	333
BstUI	CGCG	2 cut(s)	72, 313
BstV1I	GCAGC	4 cut(s)	232, 610, 934, 1206
BstV2I	GAAGAC	3 cut(s)	69, 1143, 1251
BstX2I	RGATCY	1 cut(s)	178
BstXI	CCANNNNNNTGG	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	178
BsuI	GTATCC	1 cut(s)	311
BsuRI	GGCC	3 cut(s)	215, 635, 1553
BtgI	CCRYGG	2 cut(s)	902, 1555
BtgZI	GCGATG	1 cut(s)	1038
BtsCI	GGATG	3 cut(s)	790, 1345, 1531
BtsIMutI	CAGTG	6 cut(s)	40, 621, 1239, 1318, 1513, 1602
Cac8I	GCNNGC	5 cut(s)	72, 194, 530, 944, 1211
CaiI	CAGNNNCTG	1 cut(s)	182
CfoI	GCGC	4 cut(s)	72, 74, 364, 1581
Cfr10I	RCCGGY	1 cut(s)	1012
Cfr13I	GGNCC	2 cut(s)	836, 1552
CseI	GACGC	2 cut(s)	980, 1391
Csp6I	GTAC	2 cut(s)	334, 1256
CspCI	CAANNNNNGTGG	2 cut(s)	283, 318
CviAII	CATG	7 cut(s)	260, 397, 417, 449, 809, 845, 1636
CviQI	GTAC	2 cut(s)	334, 1256
DdeI	CTNAG	4 cut(s)	93, 365, 1362, 1575
DpnI	GATC	5 cut(s)	111, 180, 453, 645, 1191
DpnII	GATC	5 cut(s)	109, 178, 451, 643, 1189
Eam1104I	CTCTTC	4 cut(s)	11, 232, 1106, 1425
EarI	CTCTTC	4 cut(s)	11, 232, 1106, 1425
EciI	GGCGGA	1 cut(s)	1442
Ecl136II	GAGCTC	2 cut(s)	371, 937
Eco105I	TACGTA	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	658
Eco24I	GRGCYC	2 cut(s)	373, 939
Eco47I	GGWCC	1 cut(s)	836
Eco47III	AGCGCT	1 cut(s)	1580
Eco53kI	GAGCTC	2 cut(s)	371, 937
Eco57I	CTGAAG	2 cut(s)	1263, 1489
Eco72I	CACGTG	1 cut(s)	587
Eco91I	GGTNACC	1 cut(s)	818
EcoICRI	GAGCTC	2 cut(s)	371, 937
EcoNI	CCTNNNNNAGG	1 cut(s)	1124
EcoO65I	GGTNACC	1 cut(s)	818
EcoRII	CCWGG	5 cut(s)	215, 763, 778, 1095, 1122
EcoT14I	CCWWGG	1 cut(s)	658
EcoT38I	GRGCYC	2 cut(s)	373, 939
ErhI	CCWWGG	1 cut(s)	658
FaeI	CATG	7 cut(s)	263, 400, 420, 452, 812, 848, 1639
FalI	AAGNNNNNCTT	2 cut(s)	1440, 1472
FaqI	GGGAC	4 cut(s)	849, 1058, 1240, 1250
FatI	CATG	7 cut(s)	259, 396, 416, 448, 808, 844, 1635
FauI	CCCGC	1 cut(s)	306
FauNDI	CATATG	2 cut(s)	342, 562
Fnu4HI	GCNGC	4 cut(s)	246, 624, 923, 1195
FokI	GGATG	3 cut(s)	777, 1352, 1538
FriOI	GRGCYC	2 cut(s)	373, 939
Fsp4HI	GCNGC	4 cut(s)	246, 624, 923, 1195
FspBI	CTAG	5 cut(s)	26, 116, 375, 501, 956
GlaI	GCGC	4 cut(s)	71, 73, 363, 1580
GluI	GCNGC	4 cut(s)	246, 624, 923, 1195
GsaI	CCCAGC	1 cut(s)	103
GsuI	CTGGAG	2 cut(s)	810, 1106
HaeII	RGCGCY	1 cut(s)	1582
HaeIII	GGCC	3 cut(s)	215, 635, 1553
HapII	CCGG	2 cut(s)	981, 1013
HgaI	GACGC	2 cut(s)	980, 1391
HhaI	GCGC	4 cut(s)	72, 74, 364, 1581
Hin1II	CATG	7 cut(s)	263, 400, 420, 452, 812, 848, 1639
Hin6I	GCGC	4 cut(s)	70, 72, 362, 1579
HinP1I	GCGC	4 cut(s)	70, 72, 362, 1579
HincII	GTYRAC	2 cut(s)	351, 429
HindII	GTYRAC	2 cut(s)	351, 429
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	6 cut(s)	42, 347, 581, 692, 1280, 1570
HpaI	GTTAAC	1 cut(s)	429
HpaII	CCGG	2 cut(s)	981, 1013
HphI	GGTGA	9 cut(s)	39, 179, 347, 480, 548, 958, 1002, 1571, 1604
Hpy166II	GTNNAC	4 cut(s)	187, 351, 429, 916
Hpy188I	TCNGA	6 cut(s)	58, 232, 368, 1068, 1285, 1463
Hpy188III	TCNNGA	2 cut(s)	80, 610
Hpy8I	GTNNAC	4 cut(s)	187, 351, 429, 916
Hpy99I	CGWCG	3 cut(s)	110, 974, 1407
HpyCH4IV	ACGT	4 cut(s)	9, 332, 586, 605
HpyCH4V	TGCA	8 cut(s)	149, 560, 626, 773, 922, 1052, 1108, 1627
HpyF10VI	GCNNNNNNNGC	4 cut(s)	368, 632, 943, 1358
HpyF3I	CTNAG	4 cut(s)	93, 365, 1362, 1575
HpySE526I	ACGT	4 cut(s)	9, 332, 586, 605
Hsp92II	CATG	7 cut(s)	263, 400, 420, 452, 812, 848, 1639
HspAI	GCGC	4 cut(s)	70, 72, 362, 1579
KspAI	GTTAAC	1 cut(s)	429
Kzo9I	GATC	5 cut(s)	109, 178, 451, 643, 1189
LguI	GCTCTTC	1 cut(s)	1425
LmnI	GCTCC	5 cut(s)	278, 376, 516, 880, 1206
Lsp1109I	GCAGC	4 cut(s)	232, 610, 934, 1206
LweI	GCATC	3 cut(s)	498, 1061, 1261
MaeI	CTAG	5 cut(s)	26, 116, 375, 501, 956
MaeII	ACGT	4 cut(s)	9, 332, 586, 605
MaeIII	GTNAC	6 cut(s)	496, 582, 601, 723, 818, 1008
MalI	GATC	5 cut(s)	111, 180, 453, 645, 1191
MboI	GATC	5 cut(s)	109, 178, 451, 643, 1189
MfeI	CAATTG	1 cut(s)	144
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	2 cut(s)	373, 939
MluCI	AATT	7 cut(s)	144, 156, 384, 409, 711, 897, 1619
MlyI	GAGTC	3 cut(s)	356, 590, 1564
MmeI	TCCRAC	2 cut(s)	1113, 1200
MroXI	GAANNNNTTC	1 cut(s)	994
MseI	TTAA	5 cut(s)	159, 383, 428, 1437, 1479
MslI	CAYNNNNRTG	1 cut(s)	813
MspA1I	CMGCKG	1 cut(s)	830
MspI	CCGG	2 cut(s)	981, 1013
MspR9I	CCNGG	5 cut(s)	217, 765, 780, 1097, 1124
MunI	CAATTG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	5 cut(s)	217, 765, 780, 1097, 1124
MvnI	CGCG	2 cut(s)	72, 313
MwoI	GCNNNNNNNGC	4 cut(s)	368, 632, 943, 1358
NdeI	CATATG	2 cut(s)	342, 562
NdeII	GATC	5 cut(s)	109, 178, 451, 643, 1189
NlaIII	CATG	7 cut(s)	263, 400, 420, 452, 812, 848, 1639
NlaIV	GGNNCC	4 cut(s)	130, 837, 1118, 1208
NmeAIII	GCCGAG	1 cut(s)	918
NmuCI	GTSAC	3 cut(s)	496, 582, 1008
NspI	RCATGY	1 cut(s)	420
PauI	GCGCGC	1 cut(s)	70
PciSI	GCTCTTC	1 cut(s)	1425
PcsI	WCGNNNNNNNCGW	1 cut(s)	998
PctI	GAATGC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	994
PfeI	GAWTC	3 cut(s)	42, 692, 1280
PfoI	TCCNGGA	1 cut(s)	1122
PkrI	GCNGC	4 cut(s)	247, 625, 924, 1196
PleI	GAGTC	3 cut(s)	355, 589, 1564
PmaCI	CACGTG	1 cut(s)	587
PmlI	CACGTG	1 cut(s)	587
PpsI	GAGTC	3 cut(s)	355, 589, 1564
Ppu21I	YACGTR	2 cut(s)	333, 587
Psp124BI	GAGCTC	2 cut(s)	373, 939
Psp1406I	AACGTT	1 cut(s)	605
Psp6I	CCWGG	5 cut(s)	215, 763, 778, 1095, 1122
PspCI	CACGTG	1 cut(s)	587
PspEI	GGTNACC	1 cut(s)	818
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	5 cut(s)	215, 763, 778, 1095, 1122
PspN4I	GGNNCC	4 cut(s)	130, 837, 1118, 1208
PspPI	GGNCC	2 cut(s)	836, 1552
PstI	CTGCAG	1 cut(s)	1110
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	178
PteI	GCGCGC	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	830
RsaI	GTAC	2 cut(s)	335, 1257
RsaNI	GTAC	2 cut(s)	334, 1256
RseI	CAYNNNNRTG	1 cut(s)	813
SacI	GAGCTC	2 cut(s)	373, 939
SapI	GCTCTTC	1 cut(s)	1425
SaqAI	TTAA	5 cut(s)	159, 383, 428, 1437, 1479
SatI	GCNGC	4 cut(s)	246, 624, 923, 1195
Sau3AI	GATC	5 cut(s)	109, 178, 451, 643, 1189
Sau96I	GGNCC	2 cut(s)	836, 1552
SchI	GAGTC	3 cut(s)	356, 590, 1564
ScrFI	CCNGG	5 cut(s)	217, 765, 780, 1097, 1124
SduI	GDGCHC	2 cut(s)	373, 939
SfaNI	GCATC	3 cut(s)	498, 1061, 1261
SfcI	CTRYAG	1 cut(s)	1106
SgrAI	CRCCGGYG	1 cut(s)	1012
SinI	GGWCC	1 cut(s)	836
SmiMI	CAYNNNNRTG	1 cut(s)	813
SnaBI	TACGTA	1 cut(s)	333
SpeI	ACTAGT	1 cut(s)	500
Sse9I	AATT	7 cut(s)	144, 156, 384, 409, 711, 897, 1619
SsiI	CCGC	9 cut(s)	50, 190, 313, 801, 1016, 1249, 1427, 1494, 1615
SspMI	CTAG	5 cut(s)	26, 116, 375, 501, 956
SstI	GAGCTC	2 cut(s)	373, 939
StyD4I	CCNGG	5 cut(s)	215, 763, 778, 1095, 1122
StyI	CCWWGG	1 cut(s)	658
TaiI	ACGT	4 cut(s)	12, 335, 589, 608
TaqI	TCGA	4 cut(s)	108, 270, 1001, 1405
TasI	AATT	7 cut(s)	144, 156, 384, 409, 711, 897, 1619
TfiI	GAWTC	3 cut(s)	42, 692, 1280
Tru1I	TTAA	5 cut(s)	159, 383, 428, 1437, 1479
Tru9I	TTAA	5 cut(s)	159, 383, 428, 1437, 1479
TscAI	CASTG	6 cut(s)	40, 621, 1246, 1318, 1513, 1602
TseFI	GTSAC	3 cut(s)	496, 582, 1008
TseI	GCWGC	4 cut(s)	245, 623, 922, 1194
Tsp45I	GTSAC	3 cut(s)	496, 582, 1008
TspDTI	ATGAA	5 cut(s)	316, 987, 1149, 1332, 1573
TspGWI	ACGGA	1 cut(s)	919
TspRI	CASTG	6 cut(s)	40, 621, 1246, 1318, 1513, 1602
VpaK11BI	GGWCC	1 cut(s)	836
XagI	CCTNNNNNAGG	1 cut(s)	1124
XapI	RAATTY	2 cut(s)	897, 1619
XceI	RCATGY	1 cut(s)	420
XmnI	GAANNNNTTC	1 cut(s)	994
XspI	CTAG	5 cut(s)	26, 116, 375, 501, 956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.